RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 DOCK11Q5JSL3 2073 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 NBEAQ8NFP9 2946 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 OR2J3O76001 311 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 S100A2P29034 98 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 C5orf64Q2M2E5 130 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 CYP2G1PQ6ZSU1 146 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 FRZBQ92765 325 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 SSX3Q99909 188 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 NDFIP1Q9BT67 221 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 YAE1D1Q9NRH1 226 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 EPG5Q9HCE0 2579 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 IGFBP2P18065 325 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 RPS10P46783 165 aaKnown RBP9.41□□□□□ -0.9
VPS4A-201ENST00000254950 CD69Q07108 199 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 CDSNQ15517 529 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 TMEM241Q24JQ0 296 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 RCC1LQ96I51 464 aaKnown RBP9.41□□□□□ -0.9
VPS4A-201ENST00000254950 PAXXQ9BUH6 204 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 WFDC1Q9HC57 220 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 WDR83OSQ9Y284 106 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 DSCAMO60469 2012 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 VENTXO95231 258 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 IL6RP08887 468 aaPredicted RBP9.41□□□□□ -0.9
VPS4A-201ENST00000254950 CR1LQ2VPA4 569 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 LHFPL4Q7Z7J7 247 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 LINC00052Q96N35 136 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 OR2C1O95371 312 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 C8orf88P0DMB2 117 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 OR5AU1Q8NGC0 362 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 FBXL7Q9UJT9 491 aa9.41□□□□□ -0.9
VPS4A-201ENST00000254950 ATP5G2Q06055 141 aa9.4□□□□□ -0.9
VPS4A-201ENST00000254950 C2orf83Q53S99 150 aa9.4□□□□□ -0.9
VPS4A-201ENST00000254950 CYTL1Q9NRR1 136 aa9.4□□□□□ -0.9
VPS4A-201ENST00000254950 C21orf62Q9NYP8 219 aa9.4□□□□□ -0.9
VPS4A-201ENST00000254950 URGCP-MRPS24S4R325 110 aa9.4□□□□□ -0.9
VPS4A-201ENST00000254950 ELOA3CA0A087WX78 387 aaPredicted RBP9.4□□□□□ -0.9
VPS4A-201ENST00000254950 A0A1B0GWJ7 208 aa9.4□□□□□ -0.9
VPS4A-201ENST00000254950 EEF1AKMT3Q96AZ1 226 aa9.4□□□□□ -0.9
VPS4A-201ENST00000254950 SEC11CQ9BY50 192 aa9.4□□□□□ -0.9
VPS4A-201ENST00000254950 MOB4Q9Y3A3 225 aa9.4□□□□□ -0.9
VPS4A-201ENST00000254950 TXNDC17Q9BRA2 123 aa9.4□□□□□ -0.91
VPS4A-201ENST00000254950 BEX4Q9NWD9 120 aaPredicted RBP9.4□□□□□ -0.91
VPS4A-201ENST00000254950 CCDC168Q8NDH2 2452 aa9.4□□□□□ -0.91
VPS4A-201ENST00000254950 SIAH2O43255 324 aa9.39□□□□□ -0.91
VPS4A-201ENST00000254950 PDE6DO43924 150 aa9.39□□□□□ -0.91
VPS4A-201ENST00000254950 TRGV3P03979 118 aa9.39□□□□□ -0.91
VPS4A-201ENST00000254950 MYOD1P15172 320 aa9.39□□□□□ -0.91
VPS4A-201ENST00000254950 CYB5R2Q6BCY4 276 aa9.39□□□□□ -0.91
VPS4A-201ENST00000254950 BMPR1BO00238 502 aa9.39□□□□□ -0.91
VPS4A-201ENST00000254950 EIF3GO75821 320 aaKnown RBP eCLIP9.39□□□□□ -0.91
VPS4A-201ENST00000254950 OR51G1Q8NGK1 321 aa9.39□□□□□ -0.91
VPS4A-201ENST00000254950 BIN3Q9NQY0 253 aa9.39□□□□□ -0.91
VPS4A-201ENST00000254950 IGHV1-69DA0A0B4J2H0 117 aa9.39□□□□□ -0.91
VPS4A-201ENST00000254950 IGHV1-69P01742 117 aa9.39□□□□□ -0.91
VPS4A-201ENST00000254950 TPPP2P59282 170 aa9.39□□□□□ -0.91
VPS4A-201ENST00000254950 MEF2BQ02080 365 aaPredicted RBP9.39□□□□□ -0.91
VPS4A-201ENST00000254950 PNRC1Q12796 327 aaPredicted RBP9.39□□□□□ -0.91
VPS4A-201ENST00000254950 Q6ZPA2 131 aa9.39□□□□□ -0.91
VPS4A-201ENST00000254950 OR1P1Q8NH06 330 aa9.39□□□□□ -0.91
VPS4A-201ENST00000254950 MRPL32Q9BYC8 188 aaKnown RBP9.39□□□□□ -0.91
VPS4A-201ENST00000254950 IGHV4-61A0A0C4DH41 118 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 H3BUX3 64 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 POU2AF1Q16633 256 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 C10orf105Q8TEF2 133 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 NPFFR1Q9GZQ6 430 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 TMEM14BQ9NUH8 114 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 C15orf62A8K5M9 175 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 CLEC3BP05452 202 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 GNG4P50150 75 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 SUMO1P63165 101 aaKnown RBP9.38□□□□□ -0.91
VPS4A-201ENST00000254950 TMEM88Q6PEY1 159 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 TMEM219Q86XT9 240 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 BPIFA4PQ86YQ2 179 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 CHD3Q12873 2000 aaKnown RBP9.38□□□□□ -0.91
VPS4A-201ENST00000254950 MFSD2BA6NFX1 497 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 CX3CL1P78423 397 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 IL15RAQ13261 267 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 PRR27Q6MZM9 219 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 MAPK1IP1LQ8NDC0 245 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 C17orf50Q8WW18 174 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 Q96MF0 132 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 CHRDL1Q9BU40 450 aa9.38□□□□□ -0.91
VPS4A-201ENST00000254950 HSPB1P04792 205 aaKnown RBP9.37□□□□□ -0.91
VPS4A-201ENST00000254950 FAM157CP0CG43 387 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 DIAPH2-AS1Q14236 149 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 ZNF439Q8NDP4 499 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 NAT8Q9UHE5 227 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 S4R3C0 116 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 TMEM50AO95807 157 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 IL4P05112 153 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 ARL14EPLP0DKL9 152 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 CGB3P0DN86 165 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 CGB7P0DN87 165 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 FAM74A3Q4VXF1 159 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 IGHV4-30-2A0A087WSY4 118 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 FSTL3O95633 263 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 GALR1P47211 349 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 RANP62826 216 aaKnown RBP9.37□□□□□ -0.91
VPS4A-201ENST00000254950 SMUG1Q53HV7 270 aa9.37□□□□□ -0.91
VPS4A-201ENST00000254950 CENPVQ7Z7K6 275 aaPredicted RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms