RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 H3BRM9 83 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 CSRP1P21291 193 aaKnown RBP11.35□□□□□ -0.59
SF3A1-201ENST00000215793 MORN2Q502X0 79 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 IMMP2LQ96T52 175 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 TMEM133Q9H2Q1 129 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 PRDM13Q9H4Q3 707 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 FABP5P3A8MUU1 101 aa11.34□□□□□ -0.59
SF3A1-201ENST00000215793 HOXA5P20719 270 aa11.34□□□□□ -0.59
SF3A1-201ENST00000215793 RPL23P62829 140 aaKnown RBP11.34□□□□□ -0.59
SF3A1-201ENST00000215793 ID3Q02535 119 aa11.34□□□□□ -0.59
SF3A1-201ENST00000215793 FLVCR1-AS1Q8TAF5 88 aa11.34□□□□□ -0.59
SF3A1-201ENST00000215793 SLC25A28Q96A46 364 aa11.34□□□□□ -0.59
SF3A1-201ENST00000215793 BEX4Q9NWD9 120 aaPredicted RBP11.34□□□□□ -0.59
SF3A1-201ENST00000215793 LYPD3O95274 346 aa11.34□□□□□ -0.59
SF3A1-201ENST00000215793 GATA2P23769 480 aaPredicted RBP11.34□□□□□ -0.59
SF3A1-201ENST00000215793 DUX3Q96PT4 197 aa11.34□□□□□ -0.59
SF3A1-201ENST00000215793 JKAMPQ9P055 326 aa11.34□□□□□ -0.59
SF3A1-201ENST00000215793 A0A1W2PRE2 83 aa11.34□□□□□ -0.59
SF3A1-201ENST00000215793 BTCP35070 178 aa11.34□□□□□ -0.59
SF3A1-201ENST00000215793 ZFP36L1Q07352 338 aaKnown RBP11.34□□□□□ -0.59
SF3A1-201ENST00000215793 ITLN2Q8WWU7 325 aaPredicted RBP11.34□□□□□ -0.59
SF3A1-201ENST00000215793 MRPL16Q9NX20 251 aaKnown RBP11.34□□□□□ -0.59
SF3A1-201ENST00000215793 TUBGCP6Q96RT7 1819 aa11.34□□□□□ -0.59
SF3A1-201ENST00000215793 HIGD1CA8MV81 97 aa11.33□□□□□ -0.59
SF3A1-201ENST00000215793 FAM90A9PA6NNJ1 464 aa11.33□□□□□ -0.6
SF3A1-201ENST00000215793 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.33□□□□□ -0.6
SF3A1-201ENST00000215793 ZNF324BQ6AW86 544 aaPredicted RBP11.33□□□□□ -0.6
SF3A1-201ENST00000215793 TGFAP01135 160 aa11.33□□□□□ -0.6
SF3A1-201ENST00000215793 MTURNQ8N3F0 131 aa11.33□□□□□ -0.6
SF3A1-201ENST00000215793 FOXC2Q99958 501 aa11.33□□□□□ -0.6
SF3A1-201ENST00000215793 EMP1P54849 157 aa11.33□□□□□ -0.6
SF3A1-201ENST00000215793 CYB5R2Q6BCY4 276 aa11.33□□□□□ -0.6
SF3A1-201ENST00000215793 DPH3Q96FX2 82 aa11.33□□□□□ -0.6
SF3A1-201ENST00000215793 LYZL4Q96KX0 146 aa11.33□□□□□ -0.6
SF3A1-201ENST00000215793 PEMTQ9UBM1 199 aa11.33□□□□□ -0.6
SF3A1-201ENST00000215793 NPFFR1Q9GZQ6 430 aa11.32□□□□□ -0.6
SF3A1-201ENST00000215793 J3QRE1 110 aa11.32□□□□□ -0.6
SF3A1-201ENST00000215793 LY6G6FQ5SQ64 297 aa11.32□□□□□ -0.6
SF3A1-201ENST00000215793 RNF125Q96EQ8 232 aa11.32□□□□□ -0.6
SF3A1-201ENST00000215793 C14orf144Q96I85 54 aa11.32□□□□□ -0.6
SF3A1-201ENST00000215793 ZNF600Q6ZNG1 722 aa11.32□□□□□ -0.6
SF3A1-201ENST00000215793 TNFRSF14Q92956 283 aa11.32□□□□□ -0.6
SF3A1-201ENST00000215793 RGPD3A6NKT7 1758 aaPredicted RBP11.32□□□□□ -0.6
SF3A1-201ENST00000215793 F8VVB4 439 aa11.32□□□□□ -0.6
SF3A1-201ENST00000215793 F8VWA3 439 aa11.32□□□□□ -0.6
SF3A1-201ENST00000215793 OSTCQ9NRP0 149 aa11.32□□□□□ -0.6
SF3A1-201ENST00000215793 PRCDQ00LT1 54 aa11.31□□□□□ -0.6
SF3A1-201ENST00000215793 DEPPQ9NTK1 212 aa11.31□□□□□ -0.6
SF3A1-201ENST00000215793 TCRBV4S1A1TA0A5B7 111 aa11.31□□□□□ -0.6
SF3A1-201ENST00000215793 SMAD7O15105 426 aaKnown RBP11.31□□□□□ -0.6
SF3A1-201ENST00000215793 PAQR4Q8N4S7 273 aaPredicted RBP11.31□□□□□ -0.6
SF3A1-201ENST00000215793 ZNF418Q8TF45 676 aaPredicted RBP11.31□□□□□ -0.6
SF3A1-201ENST00000215793 IGHV3OR16-8A0A075B7F1 116 aa11.31□□□□□ -0.6
SF3A1-201ENST00000215793 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.31□□□□□ -0.6
SF3A1-201ENST00000215793 C19orf67A6NJJ6 358 aa11.31□□□□□ -0.6
SF3A1-201ENST00000215793 DUTP33316 252 aaKnown RBP11.31□□□□□ -0.6
SF3A1-201ENST00000215793 WDR83OSQ9Y284 106 aa11.31□□□□□ -0.6
SF3A1-201ENST00000215793 EPDR1Q9UM22 224 aa11.31□□□□□ -0.6
SF3A1-201ENST00000215793 NCOR1O75376 2440 aa11.31□□□□□ -0.6
SF3A1-201ENST00000215793 TET1Q8NFU7 2136 aa11.31□□□□□ -0.6
SF3A1-201ENST00000215793 MUC21A0A0G2JKD1 596 aa11.3□□□□□ -0.6
SF3A1-201ENST00000215793 MUC21A0A140T8X8 626 aa11.3□□□□□ -0.6
SF3A1-201ENST00000215793 MUC21Q5SSG8 566 aa11.3□□□□□ -0.6
SF3A1-201ENST00000215793 DMRTA2Q96SC8 542 aa11.3□□□□□ -0.6
SF3A1-201ENST00000215793 LINC01587Q99440 93 aa11.3□□□□□ -0.6
SF3A1-201ENST00000215793 ZNF319Q9P2F9 582 aa11.3□□□□□ -0.6
SF3A1-201ENST00000215793 PRR32B1ATL7 298 aa11.3□□□□□ -0.6
SF3A1-201ENST00000215793 CRYGSP22914 178 aa11.3□□□□□ -0.6
SF3A1-201ENST00000215793 SRSF7Q16629 238 aaKnown RBP eCLIP11.3□□□□□ -0.6
SF3A1-201ENST00000215793 ANKRD36A6QL64 1941 aa11.3□□□□□ -0.6
SF3A1-201ENST00000215793 H0YIZ8 118 aa11.3□□□□□ -0.6
SF3A1-201ENST00000215793 TMEM50AO95807 157 aa11.3□□□□□ -0.6
SF3A1-201ENST00000215793 IGHV3-11P01762 117 aa11.3□□□□□ -0.6
SF3A1-201ENST00000215793 STAG3L3P0CL85 134 aa11.3□□□□□ -0.6
SF3A1-201ENST00000215793 TMEM170AQ8WVE7 144 aa11.3□□□□□ -0.6
SF3A1-201ENST00000215793 OTOFQ9HC10 1997 aa11.3□□□□□ -0.6
SF3A1-201ENST00000215793 PPBPP02775 128 aa11.3□□□□□ -0.6
SF3A1-201ENST00000215793 KIF26BQ2KJY2 2108 aa11.3□□□□□ -0.6
SF3A1-201ENST00000215793 E9PLN8 166 aa11.29□□□□□ -0.6
SF3A1-201ENST00000215793 RNASE4P34096 147 aaKnown RBP11.29□□□□□ -0.6
SF3A1-201ENST00000215793 CDKN1AP38936 164 aa11.29□□□□□ -0.6
SF3A1-201ENST00000215793 CFHR1Q03591 330 aa11.29□□□□□ -0.6
SF3A1-201ENST00000215793 TMEM190Q8WZ59 177 aa11.29□□□□□ -0.6
SF3A1-201ENST00000215793 VKORC1Q9BQB6 163 aa11.29□□□□□ -0.6
SF3A1-201ENST00000215793 DUSP14O95147 198 aaKnown RBP11.29□□□□□ -0.6
SF3A1-201ENST00000215793 TMEM105Q8N8V8 129 aa11.29□□□□□ -0.6
SF3A1-201ENST00000215793 NRXN2Q9P2S2 1712 aa11.29□□□□□ -0.6
SF3A1-201ENST00000215793 CRIPAKQ8N1N5 446 aa11.29□□□□□ -0.6
SF3A1-201ENST00000215793 FAM19A2Q8N3H0 131 aa11.29□□□□□ -0.6
SF3A1-201ENST00000215793 PRSS22Q9GZN4 317 aa11.29□□□□□ -0.6
SF3A1-201ENST00000215793 RALGAPA1Q6GYQ0 2036 aa11.29□□□□□ -0.6
SF3A1-201ENST00000215793 TRGV2A0A075B6R0 118 aa11.29□□□□□ -0.6
SF3A1-201ENST00000215793 NTN3O00634 580 aaPredicted RBP11.29□□□□□ -0.6
SF3A1-201ENST00000215793 FGF16O43320 207 aa11.29□□□□□ -0.6
SF3A1-201ENST00000215793 RAMP3O60896 148 aa11.29□□□□□ -0.6
SF3A1-201ENST00000215793 RNASE7Q9H1E1 156 aaKnown RBP11.29□□□□□ -0.6
SF3A1-201ENST00000215793 NRN1Q9NPD7 142 aa11.29□□□□□ -0.6
SF3A1-201ENST00000215793 IGHV1-18A0A0C4DH31 117 aa11.28□□□□□ -0.6
SF3A1-201ENST00000215793 ATRAIDQ6UW56 229 aa11.28□□□□□ -0.6
SF3A1-201ENST00000215793 POLEQ07864 2286 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms