RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 SCPEP1Q9HB40 452 aa7.71□□□□□ -1.18
SCN1A-222ENST00000642141 UBQLN2Q9UHD9 624 aa7.71□□□□□ -1.18
SCN1A-222ENST00000642141 PRNDQ9UKY0 176 aa7.71□□□□□ -1.18
SCN1A-222ENST00000642141 F11RQ9Y624 299 aaKnown RBP7.71□□□□□ -1.18
SCN1A-222ENST00000642141 DYNC2H1Q8NCM8 4307 aaKnown RBP7.7□□□□□ -1.18
SCN1A-222ENST00000642141 A8MWP6 167 aa7.7□□□□□ -1.18
SCN1A-222ENST00000642141 K7EIM0 57 aa7.7□□□□□ -1.18
SCN1A-222ENST00000642141 CTF1Q16619 201 aa7.7□□□□□ -1.18
SCN1A-222ENST00000642141 LPCAT3Q6P1A2 487 aa7.7□□□□□ -1.18
SCN1A-222ENST00000642141 MZT2AQ6P582 158 aa7.7□□□□□ -1.18
SCN1A-222ENST00000642141 SLC38A6Q8IZM9 456 aa7.7□□□□□ -1.18
SCN1A-222ENST00000642141 SEC22AQ96IW7 307 aa7.7□□□□□ -1.18
SCN1A-222ENST00000642141 ZNF436Q9C0F3 470 aaPredicted RBP7.7□□□□□ -1.18
SCN1A-222ENST00000642141 TMEM14BQ9NUH8 114 aa7.7□□□□□ -1.18
SCN1A-222ENST00000642141 C21orf62Q9NYP8 219 aa7.7□□□□□ -1.18
SCN1A-222ENST00000642141 UFC1Q9Y3C8 167 aa7.7□□□□□ -1.18
SCN1A-222ENST00000642141 C15orf61A6NNL5 157 aa7.69□□□□□ -1.18
SCN1A-222ENST00000642141 F8W735 103 aaPredicted RBP7.69□□□□□ -1.18
SCN1A-222ENST00000642141 YIF1AO95070 293 aa7.69□□□□□ -1.18
SCN1A-222ENST00000642141 CD3DP04234 171 aa7.69□□□□□ -1.18
SCN1A-222ENST00000642141 C8orf88P0DMB2 117 aa7.69□□□□□ -1.18
SCN1A-222ENST00000642141 ADMP35318 185 aa7.69□□□□□ -1.18
SCN1A-222ENST00000642141 PPP5CP53041 499 aa7.69□□□□□ -1.18
SCN1A-222ENST00000642141 SP6Q3SY56 376 aa7.69□□□□□ -1.18
SCN1A-222ENST00000642141 RNASE10Q5GAN6 216 aaKnown RBP7.69□□□□□ -1.18
SCN1A-222ENST00000642141 HSD17B13Q7Z5P4 300 aaPredicted RBP7.69□□□□□ -1.18
SCN1A-222ENST00000642141 OR4D10Q8NGI6 311 aa7.69□□□□□ -1.18
SCN1A-222ENST00000642141 OR1L6Q8NGR2 347 aa7.69□□□□□ -1.18
SCN1A-222ENST00000642141 TMEM190Q8WZ59 177 aa7.69□□□□□ -1.18
SCN1A-222ENST00000642141 PINX1Q96BK5 328 aaKnown RBP7.69□□□□□ -1.18
SCN1A-222ENST00000642141 BSCL2Q96G97 398 aaPredicted RBP7.69□□□□□ -1.18
SCN1A-222ENST00000642141 TMEM56Q96MV1 263 aa7.69□□□□□ -1.18
SCN1A-222ENST00000642141 CMTM3Q96MX0 182 aa7.69□□□□□ -1.18
SCN1A-222ENST00000642141 ABHD1Q96SE0 405 aa7.69□□□□□ -1.18
SCN1A-222ENST00000642141 FKBP11Q9NYL4 201 aa7.69□□□□□ -1.18
SCN1A-222ENST00000642141 MRPL27Q9P0M9 148 aaKnown RBP7.69□□□□□ -1.18
SCN1A-222ENST00000642141 EXTL2Q9UBQ6 330 aa7.69□□□□□ -1.18
SCN1A-222ENST00000642141 RYR2Q92736 4967 aa7.69□□□□□ -1.18
SCN1A-222ENST00000642141 STARD9Q9P2P6 4700 aa7.69□□□□□ -1.18
SCN1A-222ENST00000642141 IGKV3-7A0A075B6H7 116 aa7.68□□□□□ -1.18
SCN1A-222ENST00000642141 IGHV3OR16-13A0A075B7E8 117 aa7.68□□□□□ -1.18
SCN1A-222ENST00000642141 IGHV3-74A0A0B4J1X5 117 aa7.68□□□□□ -1.18
SCN1A-222ENST00000642141 RGS5O15539 181 aa7.68□□□□□ -1.18
SCN1A-222ENST00000642141 CTSGP08311 255 aa7.68□□□□□ -1.18
SCN1A-222ENST00000642141 FGF2P09038 288 aa7.68□□□□□ -1.18
SCN1A-222ENST00000642141 ZNF182P17025 639 aaPredicted RBP7.68□□□□□ -1.18
SCN1A-222ENST00000642141 TFPI2P48307 235 aa7.68□□□□□ -1.18
SCN1A-222ENST00000642141 UCP3P55916 312 aa7.68□□□□□ -1.18
SCN1A-222ENST00000642141 PIGPP57054 158 aa7.68□□□□□ -1.18
SCN1A-222ENST00000642141 ANKRD55Q3KP44 614 aa7.68□□□□□ -1.18
SCN1A-222ENST00000642141 SCGB2B2Q4G0G5 96 aa7.68□□□□□ -1.18
SCN1A-222ENST00000642141 THOC7Q6I9Y2 204 aaKnown RBP7.68□□□□□ -1.18
SCN1A-222ENST00000642141 OR2C3Q8N628 320 aa7.68□□□□□ -1.18
SCN1A-222ENST00000642141 OR5B3Q8NH48 314 aa7.68□□□□□ -1.18
SCN1A-222ENST00000642141 AP3S1Q92572 193 aa7.68□□□□□ -1.18
SCN1A-222ENST00000642141 MARC2Q969Z3 335 aa7.68□□□□□ -1.18
SCN1A-222ENST00000642141 TP53RKQ96S44 253 aa7.68□□□□□ -1.18
SCN1A-222ENST00000642141 LYSTQ99698 3801 aa7.68□□□□□ -1.18
SCN1A-222ENST00000642141 GGTLC1Q9BX51 225 aa7.68□□□□□ -1.18
SCN1A-222ENST00000642141 DAZ1Q9NQZ3 744 aaKnown RBP7.68□□□□□ -1.18
SCN1A-222ENST00000642141 LOC102724200A0A096LPH7 203 aaPredicted RBP7.67□□□□□ -1.18
SCN1A-222ENST00000642141 LCE6AA0A183 80 aa7.67□□□□□ -1.18
SCN1A-222ENST00000642141 NDUFA4O00483 81 aa7.67□□□□□ -1.18
SCN1A-222ENST00000642141 CTDSP2O14595 271 aa7.67□□□□□ -1.18
SCN1A-222ENST00000642141 GABARAPO95166 117 aa7.67□□□□□ -1.18
SCN1A-222ENST00000642141 MT-CO2P00403 227 aa7.67□□□□□ -1.18
SCN1A-222ENST00000642141 IGKV1-5P01602 117 aa7.67□□□□□ -1.18
SCN1A-222ENST00000642141 RPL35AP18077 110 aaKnown RBP7.67□□□□□ -1.18
SCN1A-222ENST00000642141 ETV6P41212 452 aa7.67□□□□□ -1.18
SCN1A-222ENST00000642141 ELLP55199 621 aaPredicted RBP7.67□□□□□ -1.18
SCN1A-222ENST00000642141 SPCS2Q15005 226 aa7.67□□□□□ -1.18
SCN1A-222ENST00000642141 FAAP20Q6NZ36 180 aa7.67□□□□□ -1.18
SCN1A-222ENST00000642141 SPSB3Q6PJ21 355 aa7.67□□□□□ -1.18
SCN1A-222ENST00000642141 OR1P1Q8NH06 330 aa7.67□□□□□ -1.18
SCN1A-222ENST00000642141 TSC22D3Q99576 134 aa7.67□□□□□ -1.18
SCN1A-222ENST00000642141 KRTAP3-3Q9BYR6 98 aa7.67□□□□□ -1.18
SCN1A-222ENST00000642141 KRTAP3-2Q9BYR7 98 aa7.67□□□□□ -1.18
SCN1A-222ENST00000642141 MIXL1Q9H2W2 232 aa7.67□□□□□ -1.18
SCN1A-222ENST00000642141 C5orf66Q9H5L9 145 aa7.67□□□□□ -1.18
SCN1A-222ENST00000642141 MTFP1Q9UDX5 166 aa7.67□□□□□ -1.18
SCN1A-222ENST00000642141 TRAV25A0A0B4J276 109 aa7.66□□□□□ -1.18
SCN1A-222ENST00000642141 A0A0B4J293 547 aa7.66□□□□□ -1.18
SCN1A-222ENST00000642141 IGHV3-66A0A0C4DH42 116 aa7.66□□□□□ -1.18
SCN1A-222ENST00000642141 I3L2K1 104 aa7.66□□□□□ -1.18
SCN1A-222ENST00000642141 NUPL2O15504 423 aaKnown RBP7.66□□□□□ -1.18
SCN1A-222ENST00000642141 IFNA17P01571 189 aa7.66□□□□□ -1.18
SCN1A-222ENST00000642141 CTSDP07339 412 aaPredicted RBP7.66□□□□□ -1.18
SCN1A-222ENST00000642141 AKR1C2P52895 323 aa7.66□□□□□ -1.18
SCN1A-222ENST00000642141 MFAP4P55083 255 aa7.66□□□□□ -1.18
SCN1A-222ENST00000642141 HSPE1P61604 102 aaKnown RBP7.66□□□□□ -1.18
SCN1A-222ENST00000642141 PRCDQ00LT1 54 aa7.66□□□□□ -1.18
SCN1A-222ENST00000642141 TRIM16LQ309B1 348 aa7.66□□□□□ -1.18
SCN1A-222ENST00000642141 GPR141Q7Z602 305 aa7.66□□□□□ -1.18
SCN1A-222ENST00000642141 APRG1Q8IVJ8 170 aa7.66□□□□□ -1.18
SCN1A-222ENST00000642141 CADM3Q8N126 398 aa7.66□□□□□ -1.18
SCN1A-222ENST00000642141 GBGT1Q8N5D6 347 aa7.66□□□□□ -1.18
SCN1A-222ENST00000642141 OR13C8Q8NGS7 320 aa7.66□□□□□ -1.18
SCN1A-222ENST00000642141 MARCH1Q8TCQ1 289 aa7.66□□□□□ -1.18
SCN1A-222ENST00000642141 ZNF414Q96IQ9 312 aa7.66□□□□□ -1.18
SCN1A-222ENST00000642141 RNF2Q99496 336 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms