RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 OR5AP2Q8NGF4 316 aa7.9□□□□□ -1.14
LIG1-213ENST00000596672 OR6F1Q8NGZ6 308 aa7.9□□□□□ -1.14
LIG1-213ENST00000596672 OR4S2Q8NH73 311 aa7.9□□□□□ -1.14
LIG1-213ENST00000596672 SPIN2AQ99865 258 aa7.9□□□□□ -1.14
LIG1-213ENST00000596672 SPIN2BQ9BPZ2 258 aa7.9□□□□□ -1.14
LIG1-213ENST00000596672 FXYD6Q9H0Q3 95 aa7.9□□□□□ -1.14
LIG1-213ENST00000596672 C20orf85Q9H1P6 137 aa7.9□□□□□ -1.14
LIG1-213ENST00000596672 RETNQ9HD89 108 aa7.9□□□□□ -1.14
LIG1-213ENST00000596672 ALG5Q9Y673 324 aa7.9□□□□□ -1.14
LIG1-213ENST00000596672 RBMY1BA6NDE4 496 aaKnown RBP7.89□□□□□ -1.15
LIG1-213ENST00000596672 RBMY1EA6NEQ0 496 aaKnown RBP7.89□□□□□ -1.15
LIG1-213ENST00000596672 C2orf70A6NJV1 201 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 MPPED1O15442 326 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 PGLYRP1O75594 196 aaPredicted RBP7.89□□□□□ -1.15
LIG1-213ENST00000596672 SLC22A5O76082 557 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 DHFRP00374 187 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 RLN1P04808 185 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 RBMY1DP0C7P1 496 aaKnown RBP7.89□□□□□ -1.15
LIG1-213ENST00000596672 HLA-GP17693 338 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 ANXA7P20073 488 aaKnown RBP7.89□□□□□ -1.15
LIG1-213ENST00000596672 TBPP20226 339 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 TAS2R46P59540 309 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 TSPAN5P62079 268 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 RPL8P62917 257 aaKnown RBP7.89□□□□□ -1.15
LIG1-213ENST00000596672 MSMO1Q15800 293 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 TATDN3Q17R31 274 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 RPEL1Q2QD12 228 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 CLEC19AQ6UXS0 136 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 UNQ9165/PRO28630Q6UXU0 137 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 TMEM17Q86X19 198 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 OR51H1Q8NH63 302 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 MUC7Q8TAX7 377 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 ZC4H2Q9NQZ6 224 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 BET1LQ9NYM9 111 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 EHFQ9NZC4 300 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 SCP2D1Q9UJQ7 156 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 ZNF257Q9Y2Q1 563 aa7.89□□□□□ -1.15
LIG1-213ENST00000596672 TMEM213A2RRL7 107 aa7.88□□□□□ -1.15
LIG1-213ENST00000596672 F8W735 103 aaPredicted RBP7.88□□□□□ -1.15
LIG1-213ENST00000596672 RBFOX2O43251 390 aaKnown RBP eCLIP7.88□□□□□ -1.15
LIG1-213ENST00000596672 IGKV1-39P01597 117 aa7.88□□□□□ -1.15
LIG1-213ENST00000596672 IGKV1D-39P04432 117 aa7.88□□□□□ -1.15
LIG1-213ENST00000596672 FOLR2P14207 255 aa7.88□□□□□ -1.15
LIG1-213ENST00000596672 WT1-ASQ06250 92 aa7.88□□□□□ -1.15
LIG1-213ENST00000596672 RBMS2Q15434 407 aaKnown RBP7.88□□□□□ -1.15
LIG1-213ENST00000596672 OR13C8Q8NGS7 320 aa7.88□□□□□ -1.15
LIG1-213ENST00000596672 MOB3AQ96BX8 217 aa7.88□□□□□ -1.15
LIG1-213ENST00000596672 WDR89Q96FK6 387 aaPredicted RBP7.88□□□□□ -1.15
LIG1-213ENST00000596672 CITED4Q96RK1 184 aa7.88□□□□□ -1.15
LIG1-213ENST00000596672 PRRT1Q99946 306 aa7.88□□□□□ -1.15
LIG1-213ENST00000596672 ZNF2Q9BSG1 426 aaPredicted RBP7.88□□□□□ -1.15
LIG1-213ENST00000596672 TMEM140Q9NV12 185 aa7.88□□□□□ -1.15
LIG1-213ENST00000596672 MLXQ9UH92 298 aa7.88□□□□□ -1.15
LIG1-213ENST00000596672 NSG2Q9Y328 171 aa7.88□□□□□ -1.15
LIG1-213ENST00000596672 IGHV3-35A0A0C4DH35 117 aa7.87□□□□□ -1.15
LIG1-213ENST00000596672 TEX50A0A1B0GTY4 177 aa7.87□□□□□ -1.15
LIG1-213ENST00000596672 C3orf84H3BNL1 204 aa7.87□□□□□ -1.15
LIG1-213ENST00000596672 ACTL6BO94805 426 aa7.87□□□□□ -1.15
LIG1-213ENST00000596672 MAS1LP35410 378 aa7.87□□□□□ -1.15
LIG1-213ENST00000596672 KIR2DS2P43631 304 aa7.87□□□□□ -1.15
LIG1-213ENST00000596672 TM4SF20Q53R12 229 aa7.87□□□□□ -1.15
LIG1-213ENST00000596672 TMED4Q7Z7H5 227 aa7.87□□□□□ -1.15
LIG1-213ENST00000596672 TCTE3Q8IZS6 198 aa7.87□□□□□ -1.15
LIG1-213ENST00000596672 DEFB125Q8N687 156 aa7.87□□□□□ -1.15
LIG1-213ENST00000596672 ZBTB34Q8NCN2 500 aa7.87□□□□□ -1.15
LIG1-213ENST00000596672 TERB2Q8NHR7 220 aa7.87□□□□□ -1.15
LIG1-213ENST00000596672 ZNF502Q8TBZ5 544 aa7.87□□□□□ -1.15
LIG1-213ENST00000596672 MARCH1Q8TCQ1 289 aa7.87□□□□□ -1.15
LIG1-213ENST00000596672 MRGPRFQ96AM1 343 aa7.87□□□□□ -1.15
LIG1-213ENST00000596672 SLC25A21Q9BQT8 299 aaPredicted RBP7.87□□□□□ -1.15
LIG1-213ENST00000596672 SEC22CQ9BRL7 303 aa7.87□□□□□ -1.15
LIG1-213ENST00000596672 PLEKHA3Q9HB20 300 aa7.87□□□□□ -1.15
LIG1-213ENST00000596672 SLC2A8Q9NY64 477 aa7.87□□□□□ -1.15
LIG1-213ENST00000596672 LGALS9O00182 355 aa7.86□□□□□ -1.15
LIG1-213ENST00000596672 GGCTO75223 188 aaKnown RBP7.86□□□□□ -1.15
LIG1-213ENST00000596672 HPRT1P00492 218 aa7.86□□□□□ -1.15
LIG1-213ENST00000596672 HRASP01112 189 aa7.86□□□□□ -1.15
LIG1-213ENST00000596672 CLEC3BP05452 202 aa7.86□□□□□ -1.15
LIG1-213ENST00000596672 CBLN1P23435 193 aa7.86□□□□□ -1.15
LIG1-213ENST00000596672 LPAR6P43657 344 aa7.86□□□□□ -1.15
LIG1-213ENST00000596672 TAS2R31P59538 309 aa7.86□□□□□ -1.15
LIG1-213ENST00000596672 ZFAND6Q6FIF0 208 aa7.86□□□□□ -1.15
LIG1-213ENST00000596672 NOXA1Q86UR1 476 aa7.86□□□□□ -1.15
LIG1-213ENST00000596672 GPHB5Q86YW7 130 aa7.86□□□□□ -1.15
LIG1-213ENST00000596672 TMEM61Q8N0U2 210 aa7.86□□□□□ -1.15
LIG1-213ENST00000596672 ARRDC1Q8N5I2 433 aa7.86□□□□□ -1.15
LIG1-213ENST00000596672 VSTM2AQ8TAG5 236 aa7.86□□□□□ -1.15
LIG1-213ENST00000596672 ST6GAL2Q96JF0 529 aa7.86□□□□□ -1.15
LIG1-213ENST00000596672 FAM110AQ9BQ89 295 aa7.86□□□□□ -1.15
LIG1-213ENST00000596672 PLEKHA2Q9HB19 425 aa7.86□□□□□ -1.15
LIG1-213ENST00000596672 IGHV3-21A0A0B4J1V1 117 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 C7orf66A4D0T2 115 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 H0Y980 276 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 IL5P05113 134 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 PGAM2P15259 253 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 NQO2P16083 231 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 F2RP25116 425 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 ADMP35318 185 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 G6PCP35575 357 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 ARL3P36405 182 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms