RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 P0C879 139 aa9.52□□□□□ -0.89
UPF1-203ENST00000594504 AKR1C4P17516 323 aa9.52□□□□□ -0.89
UPF1-203ENST00000594504 CTRB1P17538 263 aa9.52□□□□□ -0.89
UPF1-203ENST00000594504 RHOGP84095 191 aa9.52□□□□□ -0.89
UPF1-203ENST00000594504 RBMS2Q15434 407 aaKnown RBP9.52□□□□□ -0.89
UPF1-203ENST00000594504 CTRB2Q6GPI1 263 aa9.52□□□□□ -0.89
UPF1-203ENST00000594504 IL34Q6ZMJ4 242 aa9.52□□□□□ -0.89
UPF1-203ENST00000594504 FAM223AQ8IWN6 122 aa9.52□□□□□ -0.89
UPF1-203ENST00000594504 OR4A16Q8NH70 328 aa9.52□□□□□ -0.89
UPF1-203ENST00000594504 RBPMSQ93062 196 aaKnown RBP9.52□□□□□ -0.89
UPF1-203ENST00000594504 RRNAD1Q96FB5 475 aaKnown RBP9.52□□□□□ -0.89
UPF1-203ENST00000594504 CITED4Q96RK1 184 aa9.52□□□□□ -0.89
UPF1-203ENST00000594504 TM2D3Q9BRN9 247 aa9.52□□□□□ -0.89
UPF1-203ENST00000594504 CCDC32Q9BV29 185 aa9.52□□□□□ -0.89
UPF1-203ENST00000594504 RANGRFQ9HD47 186 aaPredicted RBP9.52□□□□□ -0.89
UPF1-203ENST00000594504 PALMDQ9NP74 551 aa9.52□□□□□ -0.89
UPF1-203ENST00000594504 NDUFA4L2Q9NRX3 87 aa9.52□□□□□ -0.89
UPF1-203ENST00000594504 RBMXL2O75526 392 aaKnown RBP9.51□□□□□ -0.89
UPF1-203ENST00000594504 PRH1P02810 166 aa9.51□□□□□ -0.89
UPF1-203ENST00000594504 ANXA3P12429 323 aa9.51□□□□□ -0.89
UPF1-203ENST00000594504 HIST1H1BP16401 226 aaKnown RBP9.51□□□□□ -0.89
UPF1-203ENST00000594504 SYNJ2BPP57105 145 aa9.51□□□□□ -0.89
UPF1-203ENST00000594504 KLF5Q13887 457 aaPredicted RBP9.51□□□□□ -0.89
UPF1-203ENST00000594504 KLK9Q2XQG4 91 aa9.51□□□□□ -0.89
UPF1-203ENST00000594504 TMEM128Q5BJH2 165 aa9.51□□□□□ -0.89
UPF1-203ENST00000594504 TMED4Q7Z7H5 227 aa9.51□□□□□ -0.89
UPF1-203ENST00000594504 FAM219AQ8IW50 185 aa9.51□□□□□ -0.89
UPF1-203ENST00000594504 NECAP1Q8NC96 275 aa9.51□□□□□ -0.89
UPF1-203ENST00000594504 OR10W1Q8NGF6 305 aa9.51□□□□□ -0.89
UPF1-203ENST00000594504 RNASE11Q8TAA1 199 aaKnown RBP9.51□□□□□ -0.89
UPF1-203ENST00000594504 IL22RA2Q969J5 263 aa9.51□□□□□ -0.89
UPF1-203ENST00000594504 LSM10Q969L4 123 aaKnown RBP9.51□□□□□ -0.89
UPF1-203ENST00000594504 TMEM56Q96MV1 263 aa9.51□□□□□ -0.89
UPF1-203ENST00000594504 HINT2Q9BX68 163 aa9.51□□□□□ -0.89
UPF1-203ENST00000594504 KLK9Q9UKQ9 250 aa9.51□□□□□ -0.89
UPF1-203ENST00000594504 TMEM56-RWDD3S4R434 201 aa9.51□□□□□ -0.89
UPF1-203ENST00000594504 PIGBOS1A0A0B4J2F0 54 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 LINC00854A0A1B0GVQ3 168 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 DBX1A6NMT0 343 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 NDUFB6O95139 128 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 REG1AP05451 166 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 OR13C7P0DN81 318 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 DEFA4P12838 97 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 CCR6P51684 374 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 SUPT4H1P63272 117 aaKnown RBP9.5□□□□□ -0.89
UPF1-203ENST00000594504 SRPXP78539 464 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 ATP5G2Q06055 141 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 WT1-ASQ06250 92 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 TMEM187Q14656 261 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 IZUMO4Q1ZYL8 232 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 TMEM268Q5VZI3 342 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 ZNF343Q6P1L6 599 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 C19orf35Q6ZS72 473 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 SELENOHQ8IZQ5 122 aaKnown RBP9.5□□□□□ -0.89
UPF1-203ENST00000594504 CENPSQ8N2Z9 138 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 OR9G4Q8NGQ1 327 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 LHFPL5Q8TAF8 219 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 WDR12Q9GZL7 423 aaKnown RBP9.5□□□□□ -0.89
UPF1-203ENST00000594504 EDA2RQ9HAV5 297 aa9.5□□□□□ -0.89
UPF1-203ENST00000594504 IGLV11-55A0A075B6I3 123 aa9.49□□□□□ -0.89
UPF1-203ENST00000594504 A0A0B4J293 547 aa9.49□□□□□ -0.89
UPF1-203ENST00000594504 A0A0G2JRQ6 117 aa9.49□□□□□ -0.89
UPF1-203ENST00000594504 IZUMO1RA6ND01 250 aa9.49□□□□□ -0.89
UPF1-203ENST00000594504 CYB5BO43169 146 aa9.49□□□□□ -0.89
UPF1-203ENST00000594504 OR2J3O76001 311 aa9.49□□□□□ -0.89
UPF1-203ENST00000594504 CSN3P07498 182 aa9.49□□□□□ -0.89
UPF1-203ENST00000594504 ZP3P21754 424 aa9.49□□□□□ -0.89
UPF1-203ENST00000594504 BTCP35070 178 aa9.49□□□□□ -0.89
UPF1-203ENST00000594504 MECP2P51608 486 aaKnown RBP9.49□□□□□ -0.89
UPF1-203ENST00000594504 HSPE1P61604 102 aaKnown RBP9.49□□□□□ -0.89
UPF1-203ENST00000594504 PRCDQ00LT1 54 aa9.49□□□□□ -0.89
UPF1-203ENST00000594504 EXOSC2Q13868 293 aaKnown RBP9.49□□□□□ -0.89
UPF1-203ENST00000594504 C15orf32Q32M92 178 aa9.49□□□□□ -0.89
UPF1-203ENST00000594504 FAM209BQ5JX69 171 aa9.49□□□□□ -0.89
UPF1-203ENST00000594504 ADAMTSL5Q6ZMM2 481 aa9.49□□□□□ -0.89
UPF1-203ENST00000594504 FANCD2OSQ96PS1 177 aa9.49□□□□□ -0.89
UPF1-203ENST00000594504 PEF1Q9UBV8 284 aaKnown RBP9.49□□□□□ -0.89
UPF1-203ENST00000594504 FBXL7Q9UJT9 491 aa9.49□□□□□ -0.89
UPF1-203ENST00000594504 LCE6AA0A183 80 aa9.48□□□□□ -0.89
UPF1-203ENST00000594504 A8MZ25 164 aa9.48□□□□□ -0.89
UPF1-203ENST00000594504 PLA2G10O15496 165 aa9.48□□□□□ -0.89
UPF1-203ENST00000594504 LYRM1O43325 122 aa9.48□□□□□ -0.89
UPF1-203ENST00000594504 VAMP1P23763 118 aa9.48□□□□□ -0.89
UPF1-203ENST00000594504 UBE2MP61081 183 aaKnown RBP9.48□□□□□ -0.89
UPF1-203ENST00000594504 ZNF846Q147U1 533 aa9.48□□□□□ -0.89
UPF1-203ENST00000594504 HAGHQ16775 308 aa9.48□□□□□ -0.89
UPF1-203ENST00000594504 LGI3Q8N145 548 aa9.48□□□□□ -0.89
UPF1-203ENST00000594504 SLC35G3Q8N808 338 aa9.48□□□□□ -0.89
UPF1-203ENST00000594504 PDCD10Q9BUL8 212 aa9.48□□□□□ -0.89
UPF1-203ENST00000594504 PLEKHA3Q9HB20 300 aa9.48□□□□□ -0.89
UPF1-203ENST00000594504 THYN1Q9P016 225 aa9.48□□□□□ -0.89
UPF1-203ENST00000594504 RYR2Q92736 4967 aa9.48□□□□□ -0.89
UPF1-203ENST00000594504 A0A0B4J2A0 478 aa9.47□□□□□ -0.89
UPF1-203ENST00000594504 ST8SIA3O43173 380 aa9.47□□□□□ -0.89
UPF1-203ENST00000594504 IFNA17P01571 189 aa9.47□□□□□ -0.89
UPF1-203ENST00000594504 PPP1R1AQ13522 171 aa9.47□□□□□ -0.89
UPF1-203ENST00000594504 AARDQ4LEZ3 155 aa9.47□□□□□ -0.89
UPF1-203ENST00000594504 OR1L6Q8NGR2 347 aa9.47□□□□□ -0.89
UPF1-203ENST00000594504 GPR146Q96CH1 333 aa9.47□□□□□ -0.89
UPF1-203ENST00000594504 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms