RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 F8W735 103 aaPredicted RBP15.31■□□□□ 0.04
SHMT1-209ENST00000582653 S100GP29377 79 aa15.31■□□□□ 0.04
SHMT1-209ENST00000582653 ELLP55199 621 aaPredicted RBP15.31■□□□□ 0.04
SHMT1-209ENST00000582653 UCP3P55916 312 aa15.31■□□□□ 0.04
SHMT1-209ENST00000582653 SLC38A6Q8IZM9 456 aa15.31■□□□□ 0.04
SHMT1-209ENST00000582653 OR5B3Q8NH48 314 aa15.31■□□□□ 0.04
SHMT1-209ENST00000582653 MARC2Q969Z3 335 aa15.31■□□□□ 0.04
SHMT1-209ENST00000582653 SEC22AQ96IW7 307 aa15.31■□□□□ 0.04
SHMT1-209ENST00000582653 TMEM56Q96MV1 263 aa15.31■□□□□ 0.04
SHMT1-209ENST00000582653 CHRDL1Q9BU40 450 aa15.31■□□□□ 0.04
SHMT1-209ENST00000582653 FKBP11Q9NYL4 201 aa15.31■□□□□ 0.04
SHMT1-209ENST00000582653 C21orf62Q9NYP8 219 aa15.31■□□□□ 0.04
SHMT1-209ENST00000582653 TRAV25A0A0B4J276 109 aa15.3■□□□□ 0.04
SHMT1-209ENST00000582653 C15orf61A6NNL5 157 aa15.3■□□□□ 0.04
SHMT1-209ENST00000582653 K7EIM0 57 aa15.3■□□□□ 0.04
SHMT1-209ENST00000582653 MZT2AQ6P582 158 aa15.3■□□□□ 0.04
SHMT1-209ENST00000582653 RBPMS2Q6ZRY4 209 aaKnown RBP15.3■□□□□ 0.04
SHMT1-209ENST00000582653 UBAC2Q8NBM4 344 aa15.3■□□□□ 0.04
SHMT1-209ENST00000582653 MRGPRFQ96AM1 343 aa15.3■□□□□ 0.04
SHMT1-209ENST00000582653 BSCL2Q96G97 398 aaPredicted RBP15.3■□□□□ 0.04
SHMT1-209ENST00000582653 TSC22D3Q99576 134 aa15.3■□□□□ 0.04
SHMT1-209ENST00000582653 IGHV3OR16-8A0A075B7F1 116 aa15.29■□□□□ 0.04
SHMT1-209ENST00000582653 GABARAPO95166 117 aa15.29■□□□□ 0.04
SHMT1-209ENST00000582653 PI3P19957 117 aa15.29■□□□□ 0.04
SHMT1-209ENST00000582653 GPR107Q5VW38 600 aa15.29■□□□□ 0.04
SHMT1-209ENST00000582653 H2BFWTQ7Z2G1 175 aa15.29■□□□□ 0.04
SHMT1-209ENST00000582653 OR52I2Q8NH67 350 aa15.29■□□□□ 0.04
SHMT1-209ENST00000582653 TMEM190Q8WZ59 177 aa15.29■□□□□ 0.04
SHMT1-209ENST00000582653 FAM212BQ9NTI7 297 aaPredicted RBP15.29■□□□□ 0.04
SHMT1-209ENST00000582653 ZNF207O43670 478 aaKnown RBP15.28■□□□□ 0.04
SHMT1-209ENST00000582653 ZNF182P17025 639 aaPredicted RBP15.28■□□□□ 0.04
SHMT1-209ENST00000582653 ADMP35318 185 aa15.28■□□□□ 0.04
SHMT1-209ENST00000582653 IZUMO4Q1ZYL8 232 aa15.28■□□□□ 0.04
SHMT1-209ENST00000582653 Q56UQ5 140 aa15.28■□□□□ 0.04
SHMT1-209ENST00000582653 OR4A16Q8NH70 328 aa15.28■□□□□ 0.04
SHMT1-209ENST00000582653 C20orf24Q9BUV8 137 aa15.28■□□□□ 0.04
SHMT1-209ENST00000582653 EXTL2Q9UBQ6 330 aa15.28■□□□□ 0.04
SHMT1-209ENST00000582653 CD3DP04234 171 aa15.27■□□□□ 0.04
SHMT1-209ENST00000582653 PGAM2P15259 253 aa15.27■□□□□ 0.04
SHMT1-209ENST00000582653 RNASE10Q5GAN6 216 aaKnown RBP15.27■□□□□ 0.04
SHMT1-209ENST00000582653 SPSB3Q6PJ21 355 aa15.27■□□□□ 0.04
SHMT1-209ENST00000582653 OR1L6Q8NGR2 347 aa15.27■□□□□ 0.04
SHMT1-209ENST00000582653 AP3S1Q92572 193 aa15.27■□□□□ 0.04
SHMT1-209ENST00000582653 MISP3Q96FF7 219 aa15.27■□□□□ 0.04
SHMT1-209ENST00000582653 ABHD1Q96SE0 405 aa15.27■□□□□ 0.04
SHMT1-209ENST00000582653 C5orf66Q9H5L9 145 aa15.27■□□□□ 0.04
SHMT1-209ENST00000582653 LOC102724200A0A096LPH7 203 aaPredicted RBP15.26■□□□□ 0.03
SHMT1-209ENST00000582653 NDUFA4O00483 81 aa15.26■□□□□ 0.03
SHMT1-209ENST00000582653 CTSGP08311 255 aa15.26■□□□□ 0.03
SHMT1-209ENST00000582653 OR2C3Q8N628 320 aa15.26■□□□□ 0.03
SHMT1-209ENST00000582653 OR1P1Q8NH06 330 aa15.26■□□□□ 0.03
SHMT1-209ENST00000582653 ZNF414Q96IQ9 312 aa15.26■□□□□ 0.03
SHMT1-209ENST00000582653 ATP6V0BQ99437 205 aa15.26■□□□□ 0.03
SHMT1-209ENST00000582653 GGTLC1Q9BX51 225 aa15.26■□□□□ 0.03
SHMT1-209ENST00000582653 DAZ1Q9NQZ3 744 aaKnown RBP15.26■□□□□ 0.03
SHMT1-209ENST00000582653 JTBO76095 146 aa15.25■□□□□ 0.03
SHMT1-209ENST00000582653 IGHV3-48P01763 117 aa15.25■□□□□ 0.03
SHMT1-209ENST00000582653 HSPE1P61604 102 aaKnown RBP15.25■□□□□ 0.03
SHMT1-209ENST00000582653 SPINK9Q5DT21 86 aa15.25■□□□□ 0.03
SHMT1-209ENST00000582653 LHFPL1Q86WI0 220 aa15.25■□□□□ 0.03
SHMT1-209ENST00000582653 OR4D10Q8NGI6 311 aa15.25■□□□□ 0.03
SHMT1-209ENST00000582653 TP53RKQ96S44 253 aa15.25■□□□□ 0.03
SHMT1-209ENST00000582653 OVOL2Q9BRP0 275 aa15.25■□□□□ 0.03
SHMT1-209ENST00000582653 MTFP1Q9UDX5 166 aa15.25■□□□□ 0.03
SHMT1-209ENST00000582653 UBQLN2Q9UHD9 624 aa15.25■□□□□ 0.03
SHMT1-209ENST00000582653 I3L2K1 104 aa15.24■□□□□ 0.03
SHMT1-209ENST00000582653 PPP5CP53041 499 aa15.24■□□□□ 0.03
SHMT1-209ENST00000582653 PIGPP57054 158 aa15.24■□□□□ 0.03
SHMT1-209ENST00000582653 RND3P61587 244 aa15.24■□□□□ 0.03
SHMT1-209ENST00000582653 PRCDQ00LT1 54 aa15.24■□□□□ 0.03
SHMT1-209ENST00000582653 MIXL1Q9H2W2 232 aa15.24■□□□□ 0.03
SHMT1-209ENST00000582653 K7EMT4 169 aa15.23■□□□□ 0.03
SHMT1-209ENST00000582653 IGKV1-5P01602 117 aa15.23■□□□□ 0.03
SHMT1-209ENST00000582653 SP6Q3SY56 376 aa15.23■□□□□ 0.03
SHMT1-209ENST00000582653 ARRDC1Q8N5I2 433 aa15.23■□□□□ 0.03
SHMT1-209ENST00000582653 PINX1Q96BK5 328 aaKnown RBP15.23■□□□□ 0.03
SHMT1-209ENST00000582653 SPAG8Q99932 426 aaPredicted RBP15.23■□□□□ 0.03
SHMT1-209ENST00000582653 HYDINQ4G0P3 5121 aa15.23■□□□□ 0.03
SHMT1-209ENST00000582653 EPPK1P58107 5090 aaKnown RBP15.22■□□□□ 0.03
SHMT1-209ENST00000582653 TSPAN4O14817 238 aa15.22■□□□□ 0.03
SHMT1-209ENST00000582653 MT-CO2P00403 227 aa15.22■□□□□ 0.03
SHMT1-209ENST00000582653 MFAP4P55083 255 aa15.22■□□□□ 0.03
SHMT1-209ENST00000582653 LAMTOR1Q6IAA8 161 aa15.22■□□□□ 0.03
SHMT1-209ENST00000582653 ZNF486Q96H40 463 aaPredicted RBP15.22■□□□□ 0.03
SHMT1-209ENST00000582653 IGHV3-49A0A0A0MS15 119 aa15.21■□□□□ 0.03
SHMT1-209ENST00000582653 A0A0B4J293 547 aa15.21■□□□□ 0.03
SHMT1-209ENST00000582653 C3orf85A0A1B0GTC6 90 aa15.21■□□□□ 0.03
SHMT1-209ENST00000582653 C15orf62A8K5M9 175 aa15.21■□□□□ 0.03
SHMT1-209ENST00000582653 CTDSP2O14595 271 aa15.21■□□□□ 0.03
SHMT1-209ENST00000582653 NUPL2O15504 423 aaKnown RBP15.21■□□□□ 0.03
SHMT1-209ENST00000582653 ERHP84090 104 aaKnown RBP15.21■□□□□ 0.03
SHMT1-209ENST00000582653 SPCS2Q15005 226 aa15.21■□□□□ 0.03
SHMT1-209ENST00000582653 SCGB2B2Q4G0G5 96 aa15.21■□□□□ 0.03
SHMT1-209ENST00000582653 TMEM229BQ8NBD8 167 aa15.21■□□□□ 0.03
SHMT1-209ENST00000582653 ZNF114Q8NC26 417 aa15.21■□□□□ 0.03
SHMT1-209ENST00000582653 TERB2Q8NHR7 220 aa15.21■□□□□ 0.03
SHMT1-209ENST00000582653 SMPXQ9UHP9 88 aa15.21■□□□□ 0.03
SHMT1-209ENST00000582653 PLECQ15149 4684 aaKnown RBP15.21■□□□□ 0.02
SHMT1-209ENST00000582653 RGS5O15539 181 aa15.2■□□□□ 0.02
SHMT1-209ENST00000582653 YIF1AO95070 293 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms