RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 OVOL3O00110 214 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 AGPAT2O15120 278 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 SIGLEC5O15389 551 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 NDUFA2O43678 99 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 RAMP3O60896 148 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 S1PR2O95136 353 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 TMEM50AO95807 157 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 CYB5R3P00387 301 aaPredicted RBP4.79□□□□□ -1.64
VPS39-209ENST00000568029 GYPAP02724 150 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 P0C879 139 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 PPIAL4FP0DN26 164 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 CGB3P0DN86 165 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 CGB7P0DN87 165 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 PSG1P11464 419 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 CCKARP32238 428 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 DUTP33316 252 aaKnown RBP4.79□□□□□ -1.64
VPS39-209ENST00000568029 G6PCP35575 357 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 SNCAP37840 140 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 THBS3P49746 956 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 CCL8P80075 99 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 MEF2CQ06413 473 aaPredicted RBP4.79□□□□□ -1.64
VPS39-209ENST00000568029 TMEM267Q0VDI3 215 aaPredicted RBP4.79□□□□□ -1.64
VPS39-209ENST00000568029 GUK1Q16774 197 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 LTC4SQ16873 150 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 IZUMO4Q1ZYL8 232 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 PDLIM3Q53GG5 364 aaPredicted RBP4.79□□□□□ -1.64
VPS39-209ENST00000568029 SPRNQ5BIV9 151 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 SPANXN5Q5MJ07 72 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 NCMAPQ5T1S8 102 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 BTNL3Q6UXE8 466 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 IL17RELQ6ZVW7 336 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.79□□□□□ -1.64
VPS39-209ENST00000568029 OR4A16Q8NH70 328 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 C17orf50Q8WW18 174 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 PINX1Q96BK5 328 aaKnown RBP4.79□□□□□ -1.64
VPS39-209ENST00000568029 GAFA1Q96PS6 74 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 S1PR3Q99500 378 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 CCL13Q99616 98 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 FAM110AQ9BQ89 295 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 AGMATQ9BSE5 352 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 PARD6GQ9BYG4 376 aaPredicted RBP4.79□□□□□ -1.64
VPS39-209ENST00000568029 NKX6-2Q9C056 277 aaPredicted RBP4.79□□□□□ -1.64
VPS39-209ENST00000568029 EIF5A2Q9GZV4 153 aaKnown RBP4.79□□□□□ -1.64
VPS39-209ENST00000568029 GAL3ST2Q9H3Q3 398 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 LINC00574Q9H8X3 128 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 YAE1D1Q9NRH1 226 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 IDI2-AS1Q9NZ38 188 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 LSM4Q9Y4Z0 139 aaKnown RBP4.79□□□□□ -1.64
VPS39-209ENST00000568029 PPIAL4AQ9Y536 164 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 KPTNQ9Y664 436 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 BIRC6Q9NR09 4857 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 A8MZ25 164 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 H3BP45 60 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 TMEM178BH3BS89 294 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 FCGR3BO75015 233 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 SFTA3P0C7M3 94 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 METTL15P1P0C7V9 234 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 NQO2P16083 231 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 SPCS3P61009 180 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 MRPS11P82912 194 aaKnown RBP4.78□□□□□ -1.64
VPS39-209ENST00000568029 SERF2P84101 59 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 AKR1C1Q04828 323 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 SLC38A11Q08AI6 406 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 C17orf58Q2M2W7 97 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 LRRC75BQ2VPJ9 315 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 OR2B11Q5JQS5 317 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 NCR3LG1Q68D85 454 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 CFAP161Q6P656 301 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 Q6ZSV7 163 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 LRRC75A-AS1Q8N1F1 130 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 ZNF525Q8N782 197 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 ZNF709Q8N972 641 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 OR52E5Q8NH55 327 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 OR4S2Q8NH73 311 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 DTD1Q8TEA8 209 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 RNASE6Q93091 150 aaKnown RBP4.78□□□□□ -1.64
VPS39-209ENST00000568029 RBMXL1Q96E39 390 aaKnown RBP4.78□□□□□ -1.64
VPS39-209ENST00000568029 C5orf30Q96GV9 206 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 TMEM68Q96MH6 324 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 PSMG3Q9BT73 122 aaPredicted RBP4.78□□□□□ -1.64
VPS39-209ENST00000568029 SLC35B3Q9H1N7 401 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 SH3BGRL3Q9H299 93 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 HIPK2Q9H2X6 1198 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 TMEM231Q9H6L2 316 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 UBTD1Q9HAC8 227 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 DYNLRB1Q9NP97 96 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 FBXO7Q9Y3I1 522 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 TIMM9Q9Y5J7 89 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 LINC00312Q9Y6C7 94 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 DOCK7Q96N67 2140 aa4.78□□□□□ -1.64
VPS39-209ENST00000568029 TRAV1-1A0A0B4J248 108 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 RBFOX3A6NFN3 312 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 E7EQL1 145 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 NDUFB3O43676 98 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 SOX15O60248 233 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 HRASP01112 189 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 IFNA17P01571 189 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 MBP02144 154 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 NFYBP25208 207 aa4.77□□□□□ -1.65
VPS39-209ENST00000568029 BRWD1-AS2P59051 145 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms