RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 SELENOHQ8IZQ5 122 aaKnown RBP7.52□□□□□ -1.21
CLK3-220ENST00000567992 OR4A16Q8NH70 328 aa7.52□□□□□ -1.21
CLK3-220ENST00000567992 DPF1Q92782 380 aa7.52□□□□□ -1.21
CLK3-220ENST00000567992 LSM10Q969L4 123 aaKnown RBP7.52□□□□□ -1.21
CLK3-220ENST00000567992 CCDC140Q96MF4 163 aa7.52□□□□□ -1.21
CLK3-220ENST00000567992 SCGB3A2Q96PL1 93 aa7.52□□□□□ -1.21
CLK3-220ENST00000567992 MCRIP2Q9BUT9 160 aaKnown RBP7.52□□□□□ -1.21
CLK3-220ENST00000567992 PRR13Q9NZ81 148 aa7.52□□□□□ -1.21
CLK3-220ENST00000567992 TBC1D24Q9ULP9 559 aa7.52□□□□□ -1.21
CLK3-220ENST00000567992 MFSD2BA6NFX1 497 aa7.51□□□□□ -1.21
CLK3-220ENST00000567992 SEC14L6B5MCN3 397 aa7.51□□□□□ -1.21
CLK3-220ENST00000567992 BMPR1BO00238 502 aa7.51□□□□□ -1.21
CLK3-220ENST00000567992 OVOL1O14753 267 aa7.51□□□□□ -1.21
CLK3-220ENST00000567992 OR13C7P0DN81 318 aa7.51□□□□□ -1.21
CLK3-220ENST00000567992 HIST1H1BP16401 226 aaKnown RBP7.51□□□□□ -1.21
CLK3-220ENST00000567992 EIF2B2P49770 351 aaKnown RBP7.51□□□□□ -1.21
CLK3-220ENST00000567992 CCR6P51684 374 aa7.51□□□□□ -1.21
CLK3-220ENST00000567992 HSPE1P61604 102 aaKnown RBP7.51□□□□□ -1.21
CLK3-220ENST00000567992 DHODHQ02127 395 aa7.51□□□□□ -1.21
CLK3-220ENST00000567992 ATP5G2Q06055 141 aa7.51□□□□□ -1.21
CLK3-220ENST00000567992 ASAH1Q13510 395 aa7.51□□□□□ -1.21
CLK3-220ENST00000567992 HSD17B13Q7Z5P4 300 aaPredicted RBP7.51□□□□□ -1.21
CLK3-220ENST00000567992 RBPMSQ93062 196 aaKnown RBP7.51□□□□□ -1.21
CLK3-220ENST00000567992 HINT2Q9BX68 163 aa7.51□□□□□ -1.21
CLK3-220ENST00000567992 RANGRFQ9HD47 186 aaPredicted RBP7.51□□□□□ -1.21
CLK3-220ENST00000567992 AURKAIP1Q9NWT8 199 aaPredicted RBP7.51□□□□□ -1.21
CLK3-220ENST00000567992 FKBP11Q9NYL4 201 aa7.51□□□□□ -1.21
CLK3-220ENST00000567992 PEF1Q9UBV8 284 aaKnown RBP7.51□□□□□ -1.21
CLK3-220ENST00000567992 FBXL7Q9UJT9 491 aa7.51□□□□□ -1.21
CLK3-220ENST00000567992 F11RQ9Y624 299 aaKnown RBP7.51□□□□□ -1.21
CLK3-220ENST00000567992 S4R3C0 116 aa7.51□□□□□ -1.21
CLK3-220ENST00000567992 COL7A1Q02388 2944 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 NAP1L6A6NFF2 107 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 PPP5D1E7EU14 171 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 PLA2G10O15496 165 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 ST8SIA3O43173 380 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 ATG12O94817 140 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 DHFRP00374 187 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 IGHV3-23P01764 117 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 AKR1C4P17516 323 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 ZP3P21754 424 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 KLF5Q13887 457 aaPredicted RBP7.5□□□□□ -1.21
CLK3-220ENST00000567992 PDLIM3Q53GG5 364 aaPredicted RBP7.5□□□□□ -1.21
CLK3-220ENST00000567992 SPINK9Q5DT21 86 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 C9orf66Q5T8R8 295 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 TMEM268Q5VZI3 342 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 TMED4Q7Z7H5 227 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 FAM219AQ8IW50 185 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 SGPP2Q8IWX5 399 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 OR2C3Q8N628 320 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 SLC35G3Q8N808 338 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 ZNF114Q8NC26 417 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 IL22RA2Q969J5 263 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 GPR146Q96CH1 333 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 SLC25A21Q9BQT8 299 aaPredicted RBP7.5□□□□□ -1.21
CLK3-220ENST00000567992 GPR61Q9BZJ8 451 aa7.5□□□□□ -1.21
CLK3-220ENST00000567992 PAIP2BQ9ULR5 123 aaKnown RBP7.5□□□□□ -1.21
CLK3-220ENST00000567992 LINC00854A0A1B0GVQ3 168 aa7.49□□□□□ -1.21
CLK3-220ENST00000567992 F8W735 103 aaPredicted RBP7.49□□□□□ -1.21
CLK3-220ENST00000567992 INS-IGF2F8WCM5 200 aa7.49□□□□□ -1.21
CLK3-220ENST00000567992 NDUFB6O95139 128 aa7.49□□□□□ -1.21
CLK3-220ENST00000567992 DEFA4P12838 97 aa7.49□□□□□ -1.21
CLK3-220ENST00000567992 CD300CQ08708 224 aa7.49□□□□□ -1.21
CLK3-220ENST00000567992 PPP1R1AQ13522 171 aa7.49□□□□□ -1.21
CLK3-220ENST00000567992 RBMS2Q15434 407 aaKnown RBP7.49□□□□□ -1.21
CLK3-220ENST00000567992 ANKRD55Q3KP44 614 aa7.49□□□□□ -1.21
CLK3-220ENST00000567992 TMEM128Q5BJH2 165 aa7.49□□□□□ -1.21
CLK3-220ENST00000567992 NMSQ5H8A3 153 aa7.49□□□□□ -1.21
CLK3-220ENST00000567992 ACSM6Q6P461 480 aa7.49□□□□□ -1.21
CLK3-220ENST00000567992 IL34Q6ZMJ4 242 aa7.49□□□□□ -1.21
CLK3-220ENST00000567992 AKAP14Q86UN6 197 aa7.49□□□□□ -1.21
CLK3-220ENST00000567992 ZNF502Q8TBZ5 544 aa7.49□□□□□ -1.21
CLK3-220ENST00000567992 RRNAD1Q96FB5 475 aaKnown RBP7.49□□□□□ -1.21
CLK3-220ENST00000567992 CACNG5Q9UF02 275 aa7.49□□□□□ -1.21
CLK3-220ENST00000567992 A0A0B4J2A0 478 aa7.48□□□□□ -1.21
CLK3-220ENST00000567992 WI2-2373I1.2A0A1W2PRP0 233 aa7.48□□□□□ -1.21
CLK3-220ENST00000567992 K7EIL1 84 aa7.48□□□□□ -1.21
CLK3-220ENST00000567992 K7EIM0 57 aa7.48□□□□□ -1.21
CLK3-220ENST00000567992 INPP1P49441 399 aa7.48□□□□□ -1.21
CLK3-220ENST00000567992 MECP2P51608 486 aaKnown RBP7.48□□□□□ -1.21
CLK3-220ENST00000567992 SYNJ2BPP57105 145 aa7.48□□□□□ -1.21
CLK3-220ENST00000567992 PVRIGQ6DKI7 326 aa7.48□□□□□ -1.21
CLK3-220ENST00000567992 REC114Q7Z4M0 266 aa7.48□□□□□ -1.21
CLK3-220ENST00000567992 LYZL2Q7Z4W2 148 aa7.48□□□□□ -1.21
CLK3-220ENST00000567992 NRARPQ7Z6K4 114 aa7.48□□□□□ -1.21
CLK3-220ENST00000567992 OR1P1Q8NH06 330 aa7.48□□□□□ -1.21
CLK3-220ENST00000567992 RNASE11Q8TAA1 199 aaKnown RBP7.48□□□□□ -1.21
CLK3-220ENST00000567992 EEF1AKMT3Q96AZ1 226 aa7.48□□□□□ -1.21
CLK3-220ENST00000567992 ZNF414Q96IQ9 312 aa7.48□□□□□ -1.21
CLK3-220ENST00000567992 CXorf58Q96LI9 332 aa7.48□□□□□ -1.21
CLK3-220ENST00000567992 C7orf50Q9BRJ6 194 aaKnown RBP7.48□□□□□ -1.21
CLK3-220ENST00000567992 PLEKHA3Q9HB20 300 aa7.48□□□□□ -1.21
CLK3-220ENST00000567992 SHPKQ9UHJ6 478 aa7.48□□□□□ -1.21
CLK3-220ENST00000567992 FLVCR2Q9UPI3 526 aa7.48□□□□□ -1.21
CLK3-220ENST00000567992 KCNIP3Q9Y2W7 256 aa7.48□□□□□ -1.21
CLK3-220ENST00000567992 TRBV7-1A0A0A6YYK4 115 aa7.47□□□□□ -1.21
CLK3-220ENST00000567992 IGHV3-21A0A0B4J1V1 117 aa7.47□□□□□ -1.21
CLK3-220ENST00000567992 I3L2K1 104 aa7.47□□□□□ -1.21
CLK3-220ENST00000567992 SAP30O75446 220 aa7.47□□□□□ -1.21
CLK3-220ENST00000567992 SFT2D2O95562 160 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms