RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 ABCA1O95477 2261 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 IGKV1OR2-108A0A075B7D4 117 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 MBD3L4A6NDZ8 208 aaPredicted RBP11.04□□□□□ -0.64
CLK3-215ENST00000564353 MBD3L3A6NE82 208 aaPredicted RBP11.04□□□□□ -0.64
CLK3-215ENST00000564353 MBD3L5A6NJ08 208 aaPredicted RBP11.04□□□□□ -0.64
CLK3-215ENST00000564353 HSBP1L1C9JCN9 74 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 J3QR06 171 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 F2RL2O00254 374 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 STAG3L2P0CL84 134 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 STAG3L3P0CL85 134 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 OPRK1P41145 380 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 GAGE1Q13065 139 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 C10orf55Q5SWW7 151 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 TEPPQ6URK8 271 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 MBD3L2Q8NHZ7 208 aaPredicted RBP11.04□□□□□ -0.64
CLK3-215ENST00000564353 H1FXQ92522 213 aaKnown RBP11.04□□□□□ -0.64
CLK3-215ENST00000564353 GAFA1Q96PS6 74 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 PYGO2Q9BRQ0 406 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 NPVFQ9HCQ7 196 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 MDFIC2A0A1B0GVS7 189 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 E7EUB6 86 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 K7EN84 100 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 ITGB1BP1O14713 200 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 TGOLN2O43493 480 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 LHBP01229 141 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 GCHFRP30047 84 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 CHRNB4P30926 498 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 TCL1AP56279 114 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 FXYD3Q14802 87 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 PSG5Q15238 335 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 TIMM23BQ5SRD1 257 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 CFAP161Q6P656 301 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 OR9G1Q8NH87 305 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 PDE6DO43924 150 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 CT45A6P0DMU7 189 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 CT45A5P0DMU8 189 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 CT45A7P0DMV0 189 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 LGALS4P56470 323 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 ACTL10Q5JWF8 245 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 KCNIP4Q6PIL6 250 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 TRAT1Q6PIZ9 186 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 TCTEX1D1Q8N7M0 179 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 CCL17Q92583 94 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 ANAPC16Q96DE5 110 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 ACY3Q96HD9 319 aa11.03□□□□□ -0.64
CLK3-215ENST00000564353 NOL4LQ96MY1 436 aaPredicted RBP11.03□□□□□ -0.64
CLK3-215ENST00000564353 OR7C2O60412 319 aa11.02□□□□□ -0.65
CLK3-215ENST00000564353 CXorf1O96002 111 aa11.02□□□□□ -0.65
CLK3-215ENST00000564353 RPLP1P05386 114 aaKnown RBP11.02□□□□□ -0.65
CLK3-215ENST00000564353 OR4A8P0C604 315 aa11.02□□□□□ -0.65
CLK3-215ENST00000564353 HSPE1P61604 102 aaKnown RBP11.02□□□□□ -0.65
CLK3-215ENST00000564353 DOLPP1Q86YN1 238 aa11.02□□□□□ -0.65
CLK3-215ENST00000564353 GAL3ST2Q9H3Q3 398 aa11.02□□□□□ -0.65
CLK3-215ENST00000564353 KCNIP2Q9NS61 270 aa11.02□□□□□ -0.65
CLK3-215ENST00000564353 RNF24Q9Y225 148 aa11.02□□□□□ -0.65
CLK3-215ENST00000564353 IGHV3-72A0A0B4J1Y9 119 aa11.02□□□□□ -0.65
CLK3-215ENST00000564353 TRAV5A0A0B4J249 113 aa11.02□□□□□ -0.65
CLK3-215ENST00000564353 REG1AP05451 166 aa11.02□□□□□ -0.65
CLK3-215ENST00000564353 CRYBB3P26998 211 aa11.02□□□□□ -0.65
CLK3-215ENST00000564353 SSBP2P81877 361 aaPredicted RBP11.02□□□□□ -0.65
CLK3-215ENST00000564353 MZT1Q08AG7 82 aa11.02□□□□□ -0.65
CLK3-215ENST00000564353 C19orf35Q6ZS72 473 aa11.02□□□□□ -0.65
CLK3-215ENST00000564353 S100A7AQ86SG5 101 aa11.02□□□□□ -0.65
CLK3-215ENST00000564353 OR2T6Q8NHC8 308 aa11.02□□□□□ -0.65
CLK3-215ENST00000564353 SLC35D1Q9NTN3 355 aa11.02□□□□□ -0.65
CLK3-215ENST00000564353 SPTA1P02549 2419 aa11.02□□□□□ -0.65
CLK3-215ENST00000564353 GGCTO75223 188 aaKnown RBP11.01□□□□□ -0.65
CLK3-215ENST00000564353 CGB3P0DN86 165 aa11.01□□□□□ -0.65
CLK3-215ENST00000564353 CGB7P0DN87 165 aa11.01□□□□□ -0.65
CLK3-215ENST00000564353 CD40P25942 277 aa11.01□□□□□ -0.65
CLK3-215ENST00000564353 MORN5Q5VZ52 161 aa11.01□□□□□ -0.65
CLK3-215ENST00000564353 MRPL20Q9BYC9 149 aaKnown RBP11.01□□□□□ -0.65
CLK3-215ENST00000564353 PLEKHA3Q9HB20 300 aa11.01□□□□□ -0.65
CLK3-215ENST00000564353 NAV3Q8IVL0 2385 aa11.01□□□□□ -0.65
CLK3-215ENST00000564353 IGHV3-21A0A0B4J1V1 117 aa11.01□□□□□ -0.65
CLK3-215ENST00000564353 F2Z2F3 143 aa11.01□□□□□ -0.65
CLK3-215ENST00000564353 PLAUP00749 431 aa11.01□□□□□ -0.65
CLK3-215ENST00000564353 SAA1P0DJI8 122 aaPredicted RBP11.01□□□□□ -0.65
CLK3-215ENST00000564353 OR10J1P30954 320 aa11.01□□□□□ -0.65
CLK3-215ENST00000564353 CCKARP32238 428 aa11.01□□□□□ -0.65
CLK3-215ENST00000564353 ADMP35318 185 aa11.01□□□□□ -0.65
CLK3-215ENST00000564353 CNN1P51911 297 aaKnown RBP11.01□□□□□ -0.65
CLK3-215ENST00000564353 ZNF90Q03938 601 aa11.01□□□□□ -0.65
CLK3-215ENST00000564353 PRSS33Q8NF86 280 aa11.01□□□□□ -0.65
CLK3-215ENST00000564353 SGK494Q96LW2 274 aa11.01□□□□□ -0.65
CLK3-215ENST00000564353 LINC00479Q96M42 142 aa11.01□□□□□ -0.65
CLK3-215ENST00000564353 RNASE7Q9H1E1 156 aaKnown RBP11.01□□□□□ -0.65
CLK3-215ENST00000564353 LSM4Q9Y4Z0 139 aaKnown RBP11.01□□□□□ -0.65
CLK3-215ENST00000564353 SCGB1D1O95968 90 aa11□□□□□ -0.65
CLK3-215ENST00000564353 SELENOVP59797 346 aa11□□□□□ -0.65
CLK3-215ENST00000564353 BATFQ16520 125 aa11□□□□□ -0.65
CLK3-215ENST00000564353 STUMQ69YW2 141 aa11□□□□□ -0.65
CLK3-215ENST00000564353 RBMXL3Q8N7X1 1067 aaKnown RBP11□□□□□ -0.65
CLK3-215ENST00000564353 UHRF2Q96PU4 802 aa11□□□□□ -0.65
CLK3-215ENST00000564353 TMEM14BQ9NUH8 114 aa11□□□□□ -0.65
CLK3-215ENST00000564353 RAI1Q7Z5J4 1906 aaPredicted RBP11□□□□□ -0.65
CLK3-215ENST00000564353 CUL9Q8IWT3 2517 aa11□□□□□ -0.65
CLK3-215ENST00000564353 FCN3O75636 299 aa11□□□□□ -0.65
CLK3-215ENST00000564353 VENTXO95231 258 aa11□□□□□ -0.65
CLK3-215ENST00000564353 CA1P00915 261 aaPredicted RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms