RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 TP73-AS1Q9UF72 201 aa0.76□□□□□ -2.29
SCFD1-218ENST00000556256 GLI3P10071 1580 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 CUL9Q8IWT3 2517 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 RTTNQ86VV8 2226 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 IGKV3D-7A0A0C4DH55 119 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 IGKV3OR2-268A0A0C4DH90 116 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 M0R036 132 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 IFNA16P05015 189 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 METTL15P1P0C7V9 234 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 RPS4Y1P22090 263 aaKnown RBP0.75□□□□□ -2.29
SCFD1-218ENST00000556256 HIST1H2BOP23527 126 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 HIST1H2BBP33778 126 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 HIST1H2BDP58876 126 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 SPCS3P61009 180 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 HIST1H2BCP62807 126 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 NDUFA5Q16718 116 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 HIST2H2BEQ16778 126 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 HIST2H2BFQ5QNW6 126 aaPredicted RBP0.75□□□□□ -2.29
SCFD1-218ENST00000556256 CCDC122Q5T0U0 273 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 HIST2H3PS2Q5TEC6 136 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 AADACL3Q5VUY0 350 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 C8orf74Q6P047 294 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 C20orf196Q8IYI0 205 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 C15orf53Q8NAA6 179 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 OR8J2Q8NGG1 315 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 OR13C4Q8NGS5 318 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 PFN4Q8NHR9 129 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 C11orf40Q8WZ69 217 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 HIST1H2BHQ93079 126 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 PPP1R2P1Q96PQ5 205 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 HIST1H2BNQ99877 126 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 HIST1H2BMQ99879 126 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 NIPSNAP1Q9BPW8 284 aa0.75□□□□□ -2.29
SCFD1-218ENST00000556256 MRPL27Q9P0M9 148 aaKnown RBP0.75□□□□□ -2.29
SCFD1-218ENST00000556256 WRNQ14191 1432 aaPredicted RBP eCLIP0.74□□□□□ -2.29
SCFD1-218ENST00000556256 SETD5Q9C0A6 1442 aa0.74□□□□□ -2.29
SCFD1-218ENST00000556256 MTUS2Q5JR59 1369 aa0.74□□□□□ -2.29
SCFD1-218ENST00000556256 SDCBPO00560 298 aaPredicted RBP0.74□□□□□ -2.29
SCFD1-218ENST00000556256 CHP2O43745 196 aa0.74□□□□□ -2.29
SCFD1-218ENST00000556256 HLA-DRB1P01911 266 aa0.74□□□□□ -2.29
SCFD1-218ENST00000556256 PMP2P02689 132 aa0.74□□□□□ -2.29
SCFD1-218ENST00000556256 G6PCP35575 357 aa0.74□□□□□ -2.29
SCFD1-218ENST00000556256 SULT1A1P50225 295 aa0.74□□□□□ -2.29
SCFD1-218ENST00000556256 PSME3P61289 254 aa0.74□□□□□ -2.29
SCFD1-218ENST00000556256 SNRPD2P62316 118 aaKnown RBP0.74□□□□□ -2.29
SCFD1-218ENST00000556256 RPL22L1Q6P5R6 122 aaKnown RBP0.74□□□□□ -2.29
SCFD1-218ENST00000556256 YIPF3Q9GZM5 350 aa0.74□□□□□ -2.29
SCFD1-218ENST00000556256 FBXL12Q9NXK8 326 aa0.74□□□□□ -2.29
SCFD1-218ENST00000556256 STRCQ7RTU9 1775 aa0.73□□□□□ -2.29
SCFD1-218ENST00000556256 PSMD12O00232 456 aaPredicted RBP0.73□□□□□ -2.29
SCFD1-218ENST00000556256 FAAHO00519 579 aa0.73□□□□□ -2.29
SCFD1-218ENST00000556256 SHBGP04278 402 aa0.73□□□□□ -2.29
SCFD1-218ENST00000556256 SERPINA6P08185 405 aa0.73□□□□□ -2.29
SCFD1-218ENST00000556256 CD79AP11912 226 aa0.73□□□□□ -2.29
SCFD1-218ENST00000556256 RNASE3P12724 160 aaKnown RBP0.73□□□□□ -2.29
SCFD1-218ENST00000556256 HBA1P69905 142 aa0.73□□□□□ -2.29
SCFD1-218ENST00000556256 STX5Q13190 355 aa0.73□□□□□ -2.29
SCFD1-218ENST00000556256 ZNF846Q147U1 533 aa0.73□□□□□ -2.29
SCFD1-218ENST00000556256 CDK5R1Q15078 307 aa0.73□□□□□ -2.29
SCFD1-218ENST00000556256 C10orf55Q5SWW7 151 aa0.73□□□□□ -2.29
SCFD1-218ENST00000556256 LCN15Q6UWW0 184 aa0.73□□□□□ -2.29
SCFD1-218ENST00000556256 Q6ZQT0 140 aa0.73□□□□□ -2.29
SCFD1-218ENST00000556256 RPS19BP1Q86WX3 136 aaKnown RBP0.73□□□□□ -2.29
SCFD1-218ENST00000556256 TERB2Q8NHR7 220 aa0.73□□□□□ -2.29
SCFD1-218ENST00000556256 TSPAN32Q96QS1 320 aa0.73□□□□□ -2.29
SCFD1-218ENST00000556256 PRTFDC1Q9NRG1 225 aa0.73□□□□□ -2.29
SCFD1-218ENST00000556256 VPS29Q9UBQ0 182 aa0.73□□□□□ -2.29
SCFD1-218ENST00000556256 PKIGQ9Y2B9 76 aa0.73□□□□□ -2.29
SCFD1-218ENST00000556256 SOX21Q9Y651 276 aaPredicted RBP0.73□□□□□ -2.29
SCFD1-218ENST00000556256 GREB1Q4ZG55 1949 aa0.73□□□□□ -2.29
SCFD1-218ENST00000556256 PLB1Q6P1J6 1458 aa0.73□□□□□ -2.29
SCFD1-218ENST00000556256 FLG2Q5D862 2391 aaPredicted RBP0.72□□□□□ -2.29
SCFD1-218ENST00000556256 NUP155O75694 1391 aa0.72□□□□□ -2.29
SCFD1-218ENST00000556256 IGKV3-7A0A075B6H7 116 aa0.72□□□□□ -2.29
SCFD1-218ENST00000556256 IGKV2-40A0A087WW87 121 aaPredicted RBP0.72□□□□□ -2.29
SCFD1-218ENST00000556256 PQLC2LA1A4F0 135 aa0.72□□□□□ -2.29
SCFD1-218ENST00000556256 CLDN24A6NM45 220 aa0.72□□□□□ -2.29
SCFD1-218ENST00000556256 KPNA3O00505 521 aaPredicted RBP0.72□□□□□ -2.29
SCFD1-218ENST00000556256 HCRTO43612 131 aa0.72□□□□□ -2.29
SCFD1-218ENST00000556256 IGKV2D-40P01614 121 aaPredicted RBP0.72□□□□□ -2.29
SCFD1-218ENST00000556256 TNNC2P02585 160 aa0.72□□□□□ -2.29
SCFD1-218ENST00000556256 CTSDP07339 412 aaPredicted RBP0.72□□□□□ -2.29
SCFD1-218ENST00000556256 RPL5P46777 297 aaKnown RBP0.72□□□□□ -2.29
SCFD1-218ENST00000556256 EIF2B2P49770 351 aaKnown RBP0.72□□□□□ -2.29
SCFD1-218ENST00000556256 RPS20P60866 119 aaKnown RBP0.72□□□□□ -2.29
SCFD1-218ENST00000556256 KCNJ8Q15842 424 aa0.72□□□□□ -2.29
SCFD1-218ENST00000556256 SPANXN3Q5MJ09 141 aa0.72□□□□□ -2.29
SCFD1-218ENST00000556256 ZNF826PQ6ZT77 177 aa0.72□□□□□ -2.29
SCFD1-218ENST00000556256 DEFB128Q7Z7B8 93 aa0.72□□□□□ -2.29
SCFD1-218ENST00000556256 CLDN22Q8N7P3 220 aa0.72□□□□□ -2.29
SCFD1-218ENST00000556256 TMEM106AQ96A25 262 aa0.72□□□□□ -2.29
SCFD1-218ENST00000556256 TOMM6Q96B49 74 aa0.72□□□□□ -2.29
SCFD1-218ENST00000556256 C20orf27Q9GZN8 174 aa0.72□□□□□ -2.29
SCFD1-218ENST00000556256 C11orf68Q9H3H3 251 aaKnown RBP0.72□□□□□ -2.29
SCFD1-218ENST00000556256 MAST2Q6P0Q8 1798 aa0.72□□□□□ -2.29
SCFD1-218ENST00000556256 MED13Q9UHV7 2174 aa0.72□□□□□ -2.29
SCFD1-218ENST00000556256 BAZ2BQ9UIF8 2168 aaKnown RBP0.72□□□□□ -2.29
SCFD1-218ENST00000556256 RALGAPA2Q2PPJ7 1873 aa0.71□□□□□ -2.3
SCFD1-218ENST00000556256 TTC21AQ8NDW8 1320 aa0.71□□□□□ -2.3
SCFD1-218ENST00000556256 TRAV26-2A0A0B4J265 109 aa0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms