RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 FAM222AQ5U5X8 452 aa3.35□□□□□ -1.87
LIMS1-214ENST00000542845 UBE2UQ5VVX9 321 aa3.35□□□□□ -1.87
LIMS1-214ENST00000542845 CST9LP1Q5W188 147 aa3.35□□□□□ -1.87
LIMS1-214ENST00000542845 OR10K2Q6IF99 312 aa3.35□□□□□ -1.87
LIMS1-214ENST00000542845 GSG1LQ6UXU4 331 aa3.35□□□□□ -1.87
LIMS1-214ENST00000542845 ZNF66Q6ZN08 573 aa3.35□□□□□ -1.87
LIMS1-214ENST00000542845 TRPT1Q86TN4 253 aaKnown RBP3.35□□□□□ -1.87
LIMS1-214ENST00000542845 ACBD7Q8N6N7 88 aa3.35□□□□□ -1.87
LIMS1-214ENST00000542845 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.35□□□□□ -1.87
LIMS1-214ENST00000542845 GPR148Q8TDV2 347 aa3.35□□□□□ -1.87
LIMS1-214ENST00000542845 DNAJC9Q8WXX5 260 aa3.35□□□□□ -1.87
LIMS1-214ENST00000542845 PTX4Q96A99 478 aa3.35□□□□□ -1.87
LIMS1-214ENST00000542845 CCDC124Q96CT7 223 aaKnown RBP3.35□□□□□ -1.87
LIMS1-214ENST00000542845 OR51E2Q9H255 320 aa3.35□□□□□ -1.87
LIMS1-214ENST00000542845 RIMS4Q9H426 269 aaPredicted RBP3.35□□□□□ -1.87
LIMS1-214ENST00000542845 Q9H8V8 135 aa3.35□□□□□ -1.87
LIMS1-214ENST00000542845 PLEKHJ1Q9NW61 149 aa3.35□□□□□ -1.87
LIMS1-214ENST00000542845 THYN1Q9P016 225 aa3.35□□□□□ -1.87
LIMS1-214ENST00000542845 CKLFQ9UBR5 152 aa3.35□□□□□ -1.87
LIMS1-214ENST00000542845 GMPPBQ9Y5P6 360 aa3.35□□□□□ -1.87
LIMS1-214ENST00000542845 HMCN2Q8NDA2 5059 aa3.35□□□□□ -1.87
LIMS1-214ENST00000542845 RNF213Q63HN8 5207 aa3.35□□□□□ -1.87
LIMS1-214ENST00000542845 TRAV8-7A0A075B6U6 113 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 TRAV14DV4A0A0A6YYC5 116 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 VCYO14598 125 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 DFFBO76075 338 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 CRYGCP07315 174 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 ZNF688P0C7X2 276 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 ZNF735P0CB33 412 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 GNB3P16520 340 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 PTBP1P26599 531 aaKnown RBP eCLIP3.34□□□□□ -1.87
LIMS1-214ENST00000542845 HTR2CP28335 458 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 DUTP33316 252 aaKnown RBP3.34□□□□□ -1.87
LIMS1-214ENST00000542845 FXYD7P58549 80 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 DAD1P61803 113 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 TMED1Q13445 227 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 KRTAP19-4Q3LI73 84 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 ZNF880Q6PDB4 577 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 SSX7Q7RTT5 188 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 LRRTM1Q86UE6 522 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 CCDC190Q86UF4 302 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 SPATA24Q86W54 205 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 CSNK1G2-AS1Q8NCQ2 148 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 STXBP6Q8NFX7 210 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 BSCL2Q96G97 398 aaPredicted RBP3.34□□□□□ -1.87
LIMS1-214ENST00000542845 C5orf30Q96GV9 206 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 UHRF2Q96PU4 802 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 ZNF586Q9NXT0 402 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 AK3Q9UIJ7 227 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 LINC00588Q9Y4M8 146 aa3.34□□□□□ -1.87
LIMS1-214ENST00000542845 FAT1Q14517 4588 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 IGKV1-6A0A0C4DH72 117 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 C15orf62A8K5M9 175 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 TRDCB7Z8K6 153 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 F5H768 121 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 G3V2T6 193 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 J3QRE1 110 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 FKBP6O75344 327 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 DCTN3O75935 186 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 KBTBD11O94819 623 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 NAPSAO96009 420 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 IGKV3-20P01619 116 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 APOHP02749 345 aaPredicted RBP3.33□□□□□ -1.88
LIMS1-214ENST00000542845 PRB4P10163 310 aaPredicted RBP3.33□□□□□ -1.88
LIMS1-214ENST00000542845 NUTF2P61970 127 aaKnown RBP3.33□□□□□ -1.88
LIMS1-214ENST00000542845 ZNF674Q2M3X9 581 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 XAF1Q6GPH4 301 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 SPSB3Q6PJ21 355 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 MOB1BQ7L9L4 216 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 DUSP18Q8NEJ0 188 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 OR10W1Q8NGF6 305 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 OR10J5Q8NHC4 309 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 GGHQ92820 318 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 LGALS12Q96DT0 336 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 ADTRPQ96IZ2 230 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 MYCBPQ99417 103 aaPredicted RBP3.33□□□□□ -1.88
LIMS1-214ENST00000542845 KRTAP1-5Q9BYS1 174 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 FAM107BQ9H098 131 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 KCNK15Q9H427 330 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 HRASLSQ9HDD0 168 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 Q9N2K0 584 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 AMBNQ9NP70 447 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 IMPAD1Q9NX62 359 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 MGAT4AQ9UM21 535 aa3.33□□□□□ -1.88
LIMS1-214ENST00000542845 EXOGQ9Y2C4 368 aaKnown RBP3.33□□□□□ -1.88
LIMS1-214ENST00000542845 PNMA8CA0A1B0GUJ8 204 aa3.32□□□□□ -1.88
LIMS1-214ENST00000542845 A0A1W2PPQ1 181 aa3.32□□□□□ -1.88
LIMS1-214ENST00000542845 TMEM189A5PLL7 270 aa3.32□□□□□ -1.88
LIMS1-214ENST00000542845 CGB1A6NKQ9 187 aa3.32□□□□□ -1.88
LIMS1-214ENST00000542845 SOCS1O15524 211 aa3.32□□□□□ -1.88
LIMS1-214ENST00000542845 CYB5BO43169 146 aa3.32□□□□□ -1.88
LIMS1-214ENST00000542845 IGHV3-48P01763 117 aa3.32□□□□□ -1.88
LIMS1-214ENST00000542845 OR13C7P0DN81 318 aa3.32□□□□□ -1.88
LIMS1-214ENST00000542845 DEFB130BP0DP73 79 aa3.32□□□□□ -1.88
LIMS1-214ENST00000542845 DEFB130AP0DP74 79 aa3.32□□□□□ -1.88
LIMS1-214ENST00000542845 HLA-GP17693 338 aa3.32□□□□□ -1.88
LIMS1-214ENST00000542845 IGFBP3P17936 291 aaPredicted RBP3.32□□□□□ -1.88
LIMS1-214ENST00000542845 TNFSF8P32971 234 aa3.32□□□□□ -1.88
LIMS1-214ENST00000542845 ERVFC1-1P60608 527 aa3.32□□□□□ -1.88
LIMS1-214ENST00000542845 RPL8P62917 257 aaKnown RBP3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms