RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 MSRB2Q9Y3D2 182 aa7.85□□□□□ -1.15
CLIP1-214ENST00000540539 WDR87Q6ZQQ6 2873 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 H3BMG7 143 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 RER1O15258 196 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 OR1D4P47884 311 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 ZFAND6Q6FIF0 208 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 ZNF818PQ6ZRF7 136 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 GATSQ8NAP1 163 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 Q96M66 194 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 H0Y8X5 98 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 FOXS1O43638 330 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 B3GALT2O43825 422 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 OR7C1O76099 320 aaPredicted RBP7.84□□□□□ -1.15
CLIP1-214ENST00000540539 SMIM13P0DJ93 91 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 RPL31P62899 125 aaKnown RBP7.84□□□□□ -1.15
CLIP1-214ENST00000540539 SLC25A47Q6Q0C1 308 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 WDR5BQ86VZ2 330 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 TMEFF1Q8IYR6 380 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 GAPTQ8N292 157 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 TMEM116Q8NCL8 245 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 NRGNQ92686 78 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 COX14Q96I36 57 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 RNASE7Q9H1E1 156 aaKnown RBP7.84□□□□□ -1.15
CLIP1-214ENST00000540539 PHPT1Q9NRX4 125 aaPredicted RBP7.84□□□□□ -1.15
CLIP1-214ENST00000540539 PRO0461Q9UI25 63 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 ZNF318Q5VUA4 2279 aa7.84□□□□□ -1.15
CLIP1-214ENST00000540539 CPAMD8Q8IZJ3 1885 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 PI4KAP42356 2102 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 CACNA1HO95180 2353 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 A0A1W2PPC4 97 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 A0A1W2PQM1 296 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 CEACAM4O75871 244 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 KIR2DS4P43632 304 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 FASLGP48023 281 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 TFF3Q07654 80 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 FOXI1Q12951 378 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 GUSBP1Q15486 140 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 OR8B8Q15620 311 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 TM4SF20Q53R12 229 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 GDF5OSQ5U4N7 250 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 Q6ZPA2 131 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 TEX45Q8NA69 505 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 OR4C3Q8NH37 302 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 OR1L1Q8NH94 360 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 BMFQ96LC9 184 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 A1L4Q6 167 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 C9JCJ5 164 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 K7ERJ3 54 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 APOMO95445 188 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 MT-CO3P00414 261 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 CT45A10P0DMU9 189 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 LAMA1P25391 3075 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 CD27P26842 260 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 LINC01545Q5VT33 79 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 LYSMD4Q5XG99 296 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 LCNL1Q6ZST4 164 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 ZNF502Q8TBZ5 544 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 COL25A1Q9BXS0 654 aaPredicted RBP7.83□□□□□ -1.16
CLIP1-214ENST00000540539 CACNG5Q9UF02 275 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 C19orf25Q9UFG5 118 aaPredicted RBP7.83□□□□□ -1.16
CLIP1-214ENST00000540539 POLDIP2Q9Y2S7 368 aa7.83□□□□□ -1.16
CLIP1-214ENST00000540539 TRAV36DV7A0A075B6V5 113 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 FOXH1O75593 365 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 UTS2O95399 124 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 CXorf1O96002 111 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 ZNF121P58317 390 aaPredicted RBP7.82□□□□□ -1.16
CLIP1-214ENST00000540539 TEX29Q8N6K0 151 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 CITED2Q99967 270 aaPredicted RBP7.82□□□□□ -1.16
CLIP1-214ENST00000540539 MAP1LC3CQ9BXW4 147 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 NPCDR1Q9BY65 106 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 ZNF331Q9NQX6 463 aaPredicted RBP7.82□□□□□ -1.16
CLIP1-214ENST00000540539 INSIG2Q9Y5U4 225 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 LY96Q9Y6Y9 160 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 CACNA1EQ15878 2313 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 KIR2DS5A0A0G2JLQ3 304 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 A0A0G2JNG1 304 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 CENPVL3A0A0U1RRI6 287 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 A0A1W2PRE2 83 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 PPIFP30405 207 aaKnown RBP7.82□□□□□ -1.16
CLIP1-214ENST00000540539 FUT7Q11130 342 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 KIR2DS5Q14953 304 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 NNATQ16517 81 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 C3AR1Q16581 482 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 SPATA46Q5T0L3 261 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 Q6ZS49 121 aa7.82□□□□□ -1.16
CLIP1-214ENST00000540539 FRYLO94915 3013 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 TRBV20-1A0A075B6N2 111 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 SMIM27A0A1W2PRY6 76 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 EML2O95834 649 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 YPEL5P62699 121 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 GAGE13Q4V321 117 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 CARD17Q5XLA6 110 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 OR13H1Q8NG92 308 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 OR4X2Q8NGF9 303 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 PHLDA1Q8WV24 401 aaPredicted RBP7.81□□□□□ -1.16
CLIP1-214ENST00000540539 HOXB13Q92826 284 aaPredicted RBP7.81□□□□□ -1.16
CLIP1-214ENST00000540539 PRELID3AQ96N28 172 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 TXNDC17Q9BRA2 123 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 TMEM133Q9H2Q1 129 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms