RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 CBX5P45973 191 aa9.96□□□□□ -0.82
SS18-204ENST00000539244 TCTAP57738 103 aa9.96□□□□□ -0.82
SS18-204ENST00000539244 RELQ04864 619 aaPredicted RBP9.96□□□□□ -0.82
SS18-204ENST00000539244 FAM90A2PQ658T7 463 aa9.96□□□□□ -0.82
SS18-204ENST00000539244 DHRS11Q6UWP2 260 aa9.96□□□□□ -0.82
SS18-204ENST00000539244 FCGR1BQ92637 280 aa9.96□□□□□ -0.82
SS18-204ENST00000539244 RARRES2Q99969 163 aa9.96□□□□□ -0.82
SS18-204ENST00000539244 RHPN1-AS1Q9BWJ2 59 aa9.96□□□□□ -0.82
SS18-204ENST00000539244 AUNIPQ9H7T9 357 aa9.96□□□□□ -0.82
SS18-204ENST00000539244 HERV-K104P61576 105 aa9.95□□□□□ -0.82
SS18-204ENST00000539244 ZNF124Q15973 351 aa9.95□□□□□ -0.82
SS18-204ENST00000539244 Q56UQ5 140 aa9.95□□□□□ -0.82
SS18-204ENST00000539244 SPARTQ8N0X7 666 aa9.95□□□□□ -0.82
SS18-204ENST00000539244 UBAC2Q8NBM4 344 aa9.95□□□□□ -0.82
SS18-204ENST00000539244 TMEM116Q8NCL8 245 aa9.95□□□□□ -0.82
SS18-204ENST00000539244 OR1P1Q8NH06 330 aa9.95□□□□□ -0.82
SS18-204ENST00000539244 C11orf45Q8TAV5 145 aa9.95□□□□□ -0.82
SS18-204ENST00000539244 FCAMRQ8WWV6 532 aa9.95□□□□□ -0.82
SS18-204ENST00000539244 MOB3AQ96BX8 217 aa9.95□□□□□ -0.82
SS18-204ENST00000539244 TMEM56Q96MV1 263 aa9.95□□□□□ -0.82
SS18-204ENST00000539244 PRNDQ9UKY0 176 aa9.95□□□□□ -0.82
SS18-204ENST00000539244 RAB26Q9ULW5 256 aa9.95□□□□□ -0.82
SS18-204ENST00000539244 OR51B2Q9Y5P1 312 aa9.95□□□□□ -0.82
SS18-204ENST00000539244 NUPL2O15504 423 aaKnown RBP9.94□□□□□ -0.82
SS18-204ENST00000539244 PGLYRP1O75594 196 aaPredicted RBP9.94□□□□□ -0.82
SS18-204ENST00000539244 RLN1P04808 185 aa9.94□□□□□ -0.82
SS18-204ENST00000539244 CLEC2LP0C7M8 214 aa9.94□□□□□ -0.82
SS18-204ENST00000539244 NANOS2P60321 138 aaKnown RBP9.94□□□□□ -0.82
SS18-204ENST00000539244 RBMS2Q15434 407 aaKnown RBP9.94□□□□□ -0.82
SS18-204ENST00000539244 OR11H2Q8NH07 326 aa9.94□□□□□ -0.82
SS18-204ENST00000539244 DGCR14Q96DF8 476 aaKnown RBP9.94□□□□□ -0.82
SS18-204ENST00000539244 TXN2Q99757 166 aa9.94□□□□□ -0.82
SS18-204ENST00000539244 HINT2Q9BX68 163 aa9.94□□□□□ -0.82
SS18-204ENST00000539244 DIABLOQ9NR28 239 aa9.94□□□□□ -0.82
SS18-204ENST00000539244 TMEM14BQ9NUH8 114 aa9.94□□□□□ -0.82
SS18-204ENST00000539244 FKBP11Q9NYL4 201 aa9.94□□□□□ -0.82
SS18-204ENST00000539244 ANAPC10Q9UM13 185 aa9.94□□□□□ -0.82
SS18-204ENST00000539244 NSG2Q9Y328 171 aa9.94□□□□□ -0.82
SS18-204ENST00000539244 I3L2K1 104 aa9.93□□□□□ -0.82
SS18-204ENST00000539244 TMEM127O75204 238 aa9.93□□□□□ -0.82
SS18-204ENST00000539244 SNAPC5O75971 98 aa9.93□□□□□ -0.82
SS18-204ENST00000539244 KRASP01116 189 aa9.93□□□□□ -0.82
SS18-204ENST00000539244 IFNA4P05014 189 aa9.93□□□□□ -0.82
SS18-204ENST00000539244 CD5P06127 495 aa9.93□□□□□ -0.82
SS18-204ENST00000539244 FCER2P06734 321 aa9.93□□□□□ -0.82
SS18-204ENST00000539244 G6PCP35575 357 aa9.93□□□□□ -0.82
SS18-204ENST00000539244 LPAR6P43657 344 aa9.93□□□□□ -0.82
SS18-204ENST00000539244 PRR20EP86478 221 aa9.93□□□□□ -0.82
SS18-204ENST00000539244 PRR20CP86479 221 aa9.93□□□□□ -0.82
SS18-204ENST00000539244 PRR20DP86480 221 aa9.93□□□□□ -0.82
SS18-204ENST00000539244 PRR20BP86481 221 aa9.93□□□□□ -0.82
SS18-204ENST00000539244 PRR20AP86496 221 aa9.93□□□□□ -0.82
SS18-204ENST00000539244 MXD1Q05195 221 aa9.93□□□□□ -0.82
SS18-204ENST00000539244 IDNKQ5T6J7 187 aa9.93□□□□□ -0.82
SS18-204ENST00000539244 ZNF114Q8NC26 417 aa9.93□□□□□ -0.82
SS18-204ENST00000539244 TSC22D3Q99576 134 aa9.93□□□□□ -0.82
SS18-204ENST00000539244 FAM212BQ9NTI7 297 aaPredicted RBP9.93□□□□□ -0.82
SS18-204ENST00000539244 EHFQ9NZC4 300 aa9.93□□□□□ -0.82
SS18-204ENST00000539244 TRAV14DV4A0A0A6YYC5 116 aa9.92□□□□□ -0.82
SS18-204ENST00000539244 DBX1A6NMT0 343 aa9.92□□□□□ -0.82
SS18-204ENST00000539244 C15orf61A6NNL5 157 aa9.92□□□□□ -0.82
SS18-204ENST00000539244 XRCC3O43542 346 aa9.92□□□□□ -0.82
SS18-204ENST00000539244 MFAP4P55083 255 aa9.92□□□□□ -0.82
SS18-204ENST00000539244 CMTM1Q8IZ96 169 aa9.92□□□□□ -0.82
SS18-204ENST00000539244 C2CD4CQ8TF44 421 aa9.92□□□□□ -0.82
SS18-204ENST00000539244 CMTM3Q96MX0 182 aa9.92□□□□□ -0.82
SS18-204ENST00000539244 NXF2Q9GZY0 626 aaKnown RBP9.92□□□□□ -0.82
SS18-204ENST00000539244 RNF167Q9H6Y7 350 aa9.92□□□□□ -0.82
SS18-204ENST00000539244 FBXL17Q9UF56 701 aa9.92□□□□□ -0.82
SS18-204ENST00000539244 TRAV2A0A0B4J234 112 aa9.91□□□□□ -0.82
SS18-204ENST00000539244 MEIS3P1A6NDR6 274 aa9.91□□□□□ -0.82
SS18-204ENST00000539244 DFFBO76075 338 aa9.91□□□□□ -0.82
SS18-204ENST00000539244 CA1P00915 261 aaPredicted RBP9.91□□□□□ -0.82
SS18-204ENST00000539244 NAT1P18440 290 aa9.91□□□□□ -0.82
SS18-204ENST00000539244 TFPI2P48307 235 aa9.91□□□□□ -0.82
SS18-204ENST00000539244 RFX2P48378 723 aa9.91□□□□□ -0.82
SS18-204ENST00000539244 PAFAH1B2P68402 229 aa9.91□□□□□ -0.82
SS18-204ENST00000539244 SLC25A46Q96AG3 418 aa9.91□□□□□ -0.82
SS18-204ENST00000539244 ZNF2Q9BSG1 426 aaPredicted RBP9.91□□□□□ -0.82
SS18-204ENST00000539244 FXYD6Q9H0Q3 95 aa9.91□□□□□ -0.82
SS18-204ENST00000539244 HRH4Q9H3N8 390 aa9.91□□□□□ -0.82
SS18-204ENST00000539244 VSIRQ9H7M9 311 aa9.91□□□□□ -0.82
SS18-204ENST00000539244 IFT46Q9NQC8 304 aa9.91□□□□□ -0.82
SS18-204ENST00000539244 FAT2Q9NYQ8 4349 aa9.9□□□□□ -0.82
SS18-204ENST00000539244 IGKV3-7A0A075B6H7 116 aa9.9□□□□□ -0.82
SS18-204ENST00000539244 IGHV3-49A0A0A0MS15 119 aa9.9□□□□□ -0.82
SS18-204ENST00000539244 C11orf94C9JXX5 98 aa9.9□□□□□ -0.82
SS18-204ENST00000539244 GPR31O00270 319 aa9.9□□□□□ -0.82
SS18-204ENST00000539244 YIF1AO95070 293 aa9.9□□□□□ -0.82
SS18-204ENST00000539244 TAS2R46P59540 309 aa9.9□□□□□ -0.82
SS18-204ENST00000539244 TMEM187Q14656 261 aa9.9□□□□□ -0.82
SS18-204ENST00000539244 TCF24Q7RTU0 167 aa9.9□□□□□ -0.82
SS18-204ENST00000539244 TSPAN14Q8NG11 270 aa9.9□□□□□ -0.82
SS18-204ENST00000539244 APLNQ9ULZ1 77 aa9.9□□□□□ -0.82
SS18-204ENST00000539244 MT-CO2P00403 227 aa9.89□□□□□ -0.83
SS18-204ENST00000539244 PRCDQ00LT1 54 aa9.89□□□□□ -0.83
SS18-204ENST00000539244 GBGT1Q8N5D6 347 aa9.89□□□□□ -0.83
SS18-204ENST00000539244 Q8NAQ8 132 aa9.89□□□□□ -0.83
SS18-204ENST00000539244 ST8SIA2Q92186 375 aa9.89□□□□□ -0.83
SS18-204ENST00000539244 MISP3Q96FF7 219 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms