RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 GDPD1Q8N9F7 314 aa3.81□□□□□ -1.8
USH1C-210ENST00000534556 MCFD2Q8NI22 146 aa3.81□□□□□ -1.8
USH1C-210ENST00000534556 CD300LFQ8TDQ1 290 aa3.81□□□□□ -1.8
USH1C-210ENST00000534556 SCARB1Q8WTV0 552 aa3.81□□□□□ -1.8
USH1C-210ENST00000534556 TMEM170AQ8WVE7 144 aa3.81□□□□□ -1.8
USH1C-210ENST00000534556 AP3S1Q92572 193 aa3.81□□□□□ -1.8
USH1C-210ENST00000534556 HINT2Q9BX68 163 aa3.81□□□□□ -1.8
USH1C-210ENST00000534556 COMMD5Q9GZQ3 224 aa3.81□□□□□ -1.8
USH1C-210ENST00000534556 C19orf73Q9NVV2 129 aa3.81□□□□□ -1.8
USH1C-210ENST00000534556 SIGLEC8Q9NYZ4 499 aa3.81□□□□□ -1.8
USH1C-210ENST00000534556 F11RQ9Y624 299 aaKnown RBP3.81□□□□□ -1.8
USH1C-210ENST00000534556 ALMS1Q8TCU4 4167 aa3.81□□□□□ -1.8
USH1C-210ENST00000534556 C3orf85A0A1B0GTC6 90 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 DPPA5A6NC42 116 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 RBMY1BA6NDE4 496 aaKnown RBP3.8□□□□□ -1.8
USH1C-210ENST00000534556 RBMY1EA6NEQ0 496 aaKnown RBP3.8□□□□□ -1.8
USH1C-210ENST00000534556 FABP12A6NFH5 140 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 OR2T8A6NH00 312 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 CRYM-AS1A6NIL9 109 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 A8MWP6 167 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 LGALS9O00182 355 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 ZNF207O43670 478 aaKnown RBP3.8□□□□□ -1.8
USH1C-210ENST00000534556 CREBL2O60519 120 aaPredicted RBP3.8□□□□□ -1.8
USH1C-210ENST00000534556 GGCTO75223 188 aaKnown RBP3.8□□□□□ -1.8
USH1C-210ENST00000534556 CDS2O95674 445 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 IFNA6P05013 189 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 CTSGP08311 255 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 RBMY1DP0C7P1 496 aaKnown RBP3.8□□□□□ -1.8
USH1C-210ENST00000534556 AKAIN1P0CW23 69 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 C8orf88P0DMB2 117 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 IGHV4-30-4P0DP06 118 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 RNASE2P10153 161 aaKnown RBP3.8□□□□□ -1.8
USH1C-210ENST00000534556 TBPP20226 339 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 CBLN1P23435 193 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 ARL3P36405 182 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 ETV6P41212 452 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 HSPE1P61604 102 aaKnown RBP3.8□□□□□ -1.8
USH1C-210ENST00000534556 PRCDQ00LT1 54 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 SSBP1Q04837 148 aaKnown RBP3.8□□□□□ -1.8
USH1C-210ENST00000534556 TMEM187Q14656 261 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 BAK1Q16611 211 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 RPEL1Q2QD12 228 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 AARDQ4LEZ3 155 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 SLC25A24Q6NUK1 477 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 LPCAT3Q6P1A2 487 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 LINC00322Q6ZN03 302 aaPredicted RBP3.8□□□□□ -1.8
USH1C-210ENST00000534556 CMTM1Q8IZ96 169 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 TMEM61Q8N0U2 210 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 LILRB2Q8N423 598 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 OR2C3Q8N628 320 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 OR6Q1Q8NGQ2 317 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 GPR146Q96CH1 333 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 WDR89Q96FK6 387 aaPredicted RBP3.8□□□□□ -1.8
USH1C-210ENST00000534556 ZNF486Q96H40 463 aaPredicted RBP3.8□□□□□ -1.8
USH1C-210ENST00000534556 OR4C12Q96R67 309 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 CITED4Q96RK1 184 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 SRSF8Q9BRL6 282 aaKnown RBP3.8□□□□□ -1.8
USH1C-210ENST00000534556 ZNF436Q9C0F3 470 aaPredicted RBP3.8□□□□□ -1.8
USH1C-210ENST00000534556 TMEM222Q9H0R3 208 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 FNDC4Q9H6D8 234 aaPredicted RBP3.8□□□□□ -1.8
USH1C-210ENST00000534556 SLC2A8Q9NY64 477 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 SMAD5-AS1Q9Y6J3 95 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 VPS13DQ5THJ4 4388 aa3.8□□□□□ -1.8
USH1C-210ENST00000534556 TEX13DA0A0J9YY54 714 aaPredicted RBP3.79□□□□□ -1.8
USH1C-210ENST00000534556 TGOLN2O43493 480 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 SNAPC5O75971 98 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 NXPH3O95157 252 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 MT-CO2P00403 227 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 APOHP02749 345 aaPredicted RBP3.79□□□□□ -1.8
USH1C-210ENST00000534556 DEFA4P12838 97 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 HIST1H1BP16401 226 aaKnown RBP3.79□□□□□ -1.8
USH1C-210ENST00000534556 BTCP35070 178 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 ERVK-16P61578 105 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 MRPS10P82664 201 aaKnown RBP3.79□□□□□ -1.8
USH1C-210ENST00000534556 BSXQ3C1V8 233 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 H2BFWTQ7Z2G1 175 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 LYZL2Q7Z4W2 148 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 DEFB125Q8N687 156 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 UXS1Q8NBZ7 420 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 ZNF114Q8NC26 417 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 OR5B3Q8NH48 314 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 ZFAND1Q8TCF1 268 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 VN1R17PQ8TDU5 208 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 BORCS5Q969J3 196 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 LSM10Q969L4 123 aaKnown RBP3.79□□□□□ -1.8
USH1C-210ENST00000534556 EEF1AKMT3Q96AZ1 226 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 TMEM56Q96MV1 263 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 TM2D3Q9BRN9 247 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 AIFM2Q9BRQ8 373 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 ELOVL1Q9BW60 279 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 SRRQ9GZT4 340 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 NAA60Q9H7X0 242 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 RETNQ9HD89 108 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 GAR1Q9NY12 217 aaKnown RBP3.79□□□□□ -1.8
USH1C-210ENST00000534556 RSL24D1Q9UHA3 163 aaKnown RBP3.79□□□□□ -1.8
USH1C-210ENST00000534556 PRNDQ9UKY0 176 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 TMEM56-RWDD3S4R434 201 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 RYR1P21817 5038 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 KMT2AQ03164 3969 aa3.79□□□□□ -1.8
USH1C-210ENST00000534556 IGHV3-49A0A0A0MS15 119 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms