RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 RPL18Q07020 188 aaKnown RBP0.77□□□□□ -2.29
CPSF3-205ENST00000489629 GRK1Q15835 563 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 TMEM155Q4W5P6 130 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 PABPC1L2AQ5JQF8 200 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 FAM27BQ5VT28 67 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 AADACL3Q5VUY0 350 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 GLT8D1Q68CQ7 371 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 Q6ZS49 121 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 DYNAPQ8N1N2 210 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 ANKRD29Q8N6D5 301 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 ZNF676Q8N7Q3 588 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 OR8B12Q8NGG6 310 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 ROPN1LQ96C74 230 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 OR52E6Q96RD3 313 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 NIPSNAP1Q9BPW8 284 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 HSPB9Q9BQS6 159 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 DERL1Q9BUN8 251 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 DCSTAMPQ9H295 470 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 UQCC1Q9NVA1 299 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 FBXL12Q9NXK8 326 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 IDI2-AS1Q9NZ38 188 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 SLC22A13Q9Y226 551 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 NUP160Q12769 1436 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 UBR4Q5T4S7 5183 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 LAMB2P55268 1798 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 STRCQ7RTU9 1775 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 MED12LQ86YW9 2145 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 RP1P56715 2156 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 MAST4O15021 2626 aa0.77□□□□□ -2.29
CPSF3-205ENST00000489629 PRRC2BQ5JSZ5 2229 aaKnown RBP0.76□□□□□ -2.29
CPSF3-205ENST00000489629 ECM29Q5VYK3 1845 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 DISP1Q96F81 1524 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 SCAF11Q99590 1463 aaKnown RBP0.76□□□□□ -2.29
CPSF3-205ENST00000489629 A0A1B0GV50 99 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 SMIM23A6NLE4 172 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 TMEM210A6NLX4 147 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 PSMD12O00232 456 aaPredicted RBP0.76□□□□□ -2.29
CPSF3-205ENST00000489629 CREBL2O60519 120 aaPredicted RBP0.76□□□□□ -2.29
CPSF3-205ENST00000489629 ATP5HO75947 161 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 HAND1O96004 215 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 IGHV3-7P01780 117 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 CLPSP04118 112 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 UCHL1P09936 223 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 ARL14EPLP0DKL9 152 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 CAPZBP47756 277 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 ZNF80P51504 273 aaPredicted RBP0.76□□□□□ -2.29
CPSF3-205ENST00000489629 PSME3P61289 254 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 HBA1P69905 142 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 CAV1Q03135 178 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 AKR1C1Q04828 323 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 C20orf196Q8IYI0 205 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 OR6V1Q8N148 313 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 C12orf45Q8N5I9 185 aaPredicted RBP0.76□□□□□ -2.29
CPSF3-205ENST00000489629 RPP25LQ8N5L8 163 aaKnown RBP0.76□□□□□ -2.29
CPSF3-205ENST00000489629 MRPL30Q8TCC3 161 aaKnown RBP0.76□□□□□ -2.29
CPSF3-205ENST00000489629 RASSF5Q8WWW0 418 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 DCUN1D1Q96GG9 259 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 TSPAN32Q96QS1 320 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 TMEM147Q9BVK8 224 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 ULBP3Q9BZM4 244 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 CHST6Q9GZX3 395 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 FAM96AQ9H5X1 160 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 XAGE1AQ9HD64 81 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 RSL24D1Q9UHA3 163 aaKnown RBP0.76□□□□□ -2.29
CPSF3-205ENST00000489629 FBXO5Q9UKT4 447 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 CYSLTR1Q9Y271 337 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 TIMM9Q9Y5J7 89 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 TEP1Q99973 2627 aaKnown RBP0.76□□□□□ -2.29
CPSF3-205ENST00000489629 ZFHX2Q9C0A1 2572 aaPredicted RBP0.76□□□□□ -2.29
CPSF3-205ENST00000489629 ZFHX4Q86UP3 3567 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 MYH3P11055 1940 aa0.76□□□□□ -2.29
CPSF3-205ENST00000489629 PCF11O94913 1555 aaKnown RBP0.75□□□□□ -2.29
CPSF3-205ENST00000489629 RGS12O14924 1447 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 hADV38S2A0JD32 116 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 PQLC2LA1A4F0 135 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 OR51F1A6NGY5 319 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 FABP5P3A8MUU1 101 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 IBA57-AS1B1ANH7 110 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 BUB1B-PAK6H3BSN5 160 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 CIAO1O76071 339 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 NAPSAO96009 420 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 SHBGP04278 402 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 SULT1A3P0DMM9 295 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 SULT1A4P0DMN0 295 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 MSNP26038 577 aaKnown RBP0.75□□□□□ -2.29
CPSF3-205ENST00000489629 HSD11B1P28845 292 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 AP1S1P61966 158 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 RELAQ04206 551 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 STX5Q13190 355 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 CDK10Q15131 360 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 TMEM97Q5BJF2 176 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 SPOPLQ6IQ16 392 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 KTN1-AS1Q86SY8 53 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 ZNF439Q8NDP4 499 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 H1FXQ92522 213 aaKnown RBP0.75□□□□□ -2.29
CPSF3-205ENST00000489629 TLNRD1Q9H1K6 362 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 GLTPQ9NZD2 209 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 SCN8AQ9UQD0 1980 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 CHD6Q8TD26 2715 aa0.75□□□□□ -2.29
CPSF3-205ENST00000489629 ANKRD11Q6UB99 2663 aaPredicted RBP0.75□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms