RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 GPHA2Q96T91 129 aa7.6□□□□□ -1.19
COL6A3-210ENST00000473258 TOMM7Q9P0U1 55 aa7.6□□□□□ -1.19
COL6A3-210ENST00000473258 SVILO95425 2214 aa7.6□□□□□ -1.19
COL6A3-210ENST00000473258 SNRNP200O75643 2136 aaKnown RBP7.6□□□□□ -1.19
COL6A3-210ENST00000473258 C9JCJ5 164 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 TNFRSF1AP19438 455 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 RPL32P62910 135 aaKnown RBP7.59□□□□□ -1.19
COL6A3-210ENST00000473258 RTBDNQ9BSG5 229 aaPredicted RBP7.59□□□□□ -1.19
COL6A3-210ENST00000473258 PCM1Q15154 2024 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 M0R381 172 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 TMPRSS2O15393 492 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 SCRG1O75711 98 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 ELNP15502 786 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 C10orf91Q5T1B1 145 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 CDC42BPAQ5VT25 1732 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 ZNF818PQ6ZRF7 136 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 SLC25A48Q6ZT89 311 aaKnown RBP7.59□□□□□ -1.19
COL6A3-210ENST00000473258 RETNQ9HD89 108 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 CHD4Q14839 1912 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 IGKV3-7A0A075B6H7 116 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 A0A1B0GUS0 222 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 FAM90A10PA6NDY2 464 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 FAM90A18PA6NE21 464 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 FAM90A16PA6NEW6 464 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 FAM90A20PA6NIJ5 464 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 FAM90A8PA6NJQ4 464 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 FAM90A7PA6NKC0 464 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 FAM90A22PA8MWA6 464 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 FAM90A12PA8MX19 464 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 FAM90A5PA8MXJ8 464 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 FAM90A23PA8MXZ1 464 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 ZNHIT1O43257 154 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 SS18L1O75177 396 aaPredicted RBP7.59□□□□□ -1.19
COL6A3-210ENST00000473258 FAM90A15PP0C7V4 464 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 FAM90A13PP0C7W8 464 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 FAM90A14PP0C7W9 464 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 FAM90A24PP0C7X0 464 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 TMEM240Q5SV17 173 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 PHRF1Q9P1Y6 1649 aaKnown RBP7.59□□□□□ -1.19
COL6A3-210ENST00000473258 TM4SF1P30408 202 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 DUTP33316 252 aaKnown RBP7.59□□□□□ -1.19
COL6A3-210ENST00000473258 PCSK4Q6UW60 755 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 C1orf162Q8NEQ5 155 aaPredicted RBP7.59□□□□□ -1.19
COL6A3-210ENST00000473258 ZNF764Q96H86 408 aaPredicted RBP7.59□□□□□ -1.19
COL6A3-210ENST00000473258 C16orf92Q96LL3 132 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 WFDC1Q9HC57 220 aa7.59□□□□□ -1.19
COL6A3-210ENST00000473258 E9PCH4 1651 aa7.59□□□□□ -1.2
COL6A3-210ENST00000473258 TMEM14DPA8MWL7 114 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 PROB1E7EW31 1015 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 RPL27AP46776 148 aaKnown RBP7.58□□□□□ -1.2
COL6A3-210ENST00000473258 PRSS12P56730 875 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 HAPLN4Q86UW8 402 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 VSTM2LQ96N03 204 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 IGKV3D-15A0A087WSY6 115 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 A0A1W2PPI3 338 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 GFRA3O60609 400 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 IGKV3-15P01624 115 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 DEFB133Q30KQ1 61 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 ZNF576Q9H609 170 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 IGKV3D-11A0A0A0MRZ8 115 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 IGHV3-20A0A0C4DH32 117 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 NPIPB13A6NJU9 1138 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 IGKV3-11P04433 115 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 FGF6P10767 208 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 HAMPP81172 84 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 C9orf40Q8IXQ3 194 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 OR13A1Q8NGR1 328 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 A0A1B0GX78 115 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 CGB1A6NKQ9 187 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 CCL1P22362 96 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 RUNX3Q13761 415 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 LAGE3Q14657 143 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 PDFQ9HBH1 243 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 RNF115Q9Y4L5 304 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 LY96Q9Y6Y9 160 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 DIP2BQ9P265 1576 aa7.58□□□□□ -1.2
COL6A3-210ENST00000473258 IGKV6D-21A0A0A0MT36 114 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 MORN5Q5VZ52 161 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 TMEM86BQ8N661 226 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 CCDC88AQ3V6T2 1871 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 IGKV3OR2-268A0A0C4DH90 116 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 PPIHO43447 177 aaKnown RBP7.57□□□□□ -1.2
COL6A3-210ENST00000473258 PYYP10082 97 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 PGFP49763 221 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 ATP5G2Q06055 141 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 TEN1Q86WV5 123 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 PEMTQ9UBM1 199 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 NEURL4Q96JN8 1562 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 FOXI3A8MTJ6 420 aaPredicted RBP7.57□□□□□ -1.2
COL6A3-210ENST00000473258 IQCF6A8MYZ5 107 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 C9JQL5 133 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 MIR17HGQ75NE6 70 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 NEGR1Q7Z3B1 354 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 SPTSSBQ8NFR3 76 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 Q9Y3F1 56 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 ATP5G1P05496 136 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 SRD5A1P18405 259 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 CEND1Q8N111 149 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 CXXC4Q9H2H0 198 aa7.57□□□□□ -1.2
COL6A3-210ENST00000473258 SIT1Q9Y3P8 196 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms