RNA–Protein interactions for RNA: ENST00000464425.1

VPS52-215, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 1,060 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-215ENST00000464425 PRAF2O60831 178 aa13.16□□□□□ -0.3
VPS52-215ENST00000464425 RBMXL2O75526 392 aaKnown RBP13.16□□□□□ -0.3
VPS52-215ENST00000464425 HOXD3P31249 432 aaPredicted RBP13.16□□□□□ -0.3
VPS52-215ENST00000464425 Q6ZRM9 215 aa13.16□□□□□ -0.3
VPS52-215ENST00000464425 TTC9CQ8N5M4 171 aa13.16□□□□□ -0.3
VPS52-215ENST00000464425 OR1L8Q8NGR8 309 aa13.16□□□□□ -0.3
VPS52-215ENST00000464425 ZNF431Q8TF32 576 aaPredicted RBP13.16□□□□□ -0.3
VPS52-215ENST00000464425 MCRIP2Q9BUT9 160 aaKnown RBP13.16□□□□□ -0.3
VPS52-215ENST00000464425 NDUFA4L2Q9NRX3 87 aa13.16□□□□□ -0.3
VPS52-215ENST00000464425 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.16□□□□□ -0.3
VPS52-215ENST00000464425 A0A0G2JLM5 398 aa13.15□□□□□ -0.3
VPS52-215ENST00000464425 A0A1B0GU03 582 aa13.15□□□□□ -0.3
VPS52-215ENST00000464425 ANKRD34BA5PLL1 514 aa13.15□□□□□ -0.3
VPS52-215ENST00000464425 CGB1A6NKQ9 187 aa13.15□□□□□ -0.3
VPS52-215ENST00000464425 DBX1A6NMT0 343 aa13.15□□□□□ -0.3
VPS52-215ENST00000464425 LINC01619G3V211 115 aa13.15□□□□□ -0.3
VPS52-215ENST00000464425 BRI3O95415 125 aa13.15□□□□□ -0.3
VPS52-215ENST00000464425 DHFRP00374 187 aa13.15□□□□□ -0.3
VPS52-215ENST00000464425 HSPB1P04792 205 aaKnown RBP13.15□□□□□ -0.3
VPS52-215ENST00000464425 OR8U8P0C7N1 319 aa13.15□□□□□ -0.3
VPS52-215ENST00000464425 SLC25A6P12236 298 aa13.15□□□□□ -0.3
VPS52-215ENST00000464425 AREGP15514 252 aa13.15□□□□□ -0.3
VPS52-215ENST00000464425 SLURP1P55000 103 aa13.15□□□□□ -0.3
VPS52-215ENST00000464425 HSPE1P61604 102 aaKnown RBP13.15□□□□□ -0.3
VPS52-215ENST00000464425 IZUMO4Q1ZYL8 232 aa13.15□□□□□ -0.3
VPS52-215ENST00000464425 RGS21Q2M5E4 152 aa13.15□□□□□ -0.3
VPS52-215ENST00000464425 C19orf35Q6ZS72 473 aa13.15□□□□□ -0.3
VPS52-215ENST00000464425 HSD17B13Q7Z5P4 300 aaPredicted RBP13.15□□□□□ -0.3
VPS52-215ENST00000464425 OR52B4Q8NGK2 314 aa13.15□□□□□ -0.3
VPS52-215ENST00000464425 QTRT1Q9BXR0 403 aaKnown RBP13.15□□□□□ -0.3
VPS52-215ENST00000464425 GPN1Q9HCN4 374 aaPredicted RBP13.15□□□□□ -0.3
VPS52-215ENST00000464425 SNRPGP15A8MWD9 76 aa13.14□□□□□ -0.31
VPS52-215ENST00000464425 REG1AP05451 166 aa13.14□□□□□ -0.31
VPS52-215ENST00000464425 TRAPPC2P0DI81 140 aa13.14□□□□□ -0.31
VPS52-215ENST00000464425 TRAPPC2BP0DI82 140 aa13.14□□□□□ -0.31
VPS52-215ENST00000464425 SPNP16150 400 aa13.14□□□□□ -0.31
VPS52-215ENST00000464425 RHOGP84095 191 aa13.14□□□□□ -0.31
VPS52-215ENST00000464425 PDLIM3Q53GG5 364 aaPredicted RBP13.14□□□□□ -0.31
VPS52-215ENST00000464425 OR52E5Q8NH55 327 aa13.14□□□□□ -0.31
VPS52-215ENST00000464425 DCUN1D4Q92564 292 aa13.14□□□□□ -0.31
VPS52-215ENST00000464425 SEC22CQ9BRL7 303 aa13.14□□□□□ -0.31
VPS52-215ENST00000464425 CACNG5Q9UF02 275 aa13.14□□□□□ -0.31
VPS52-215ENST00000464425 SEC14L6B5MCN3 397 aa13.13□□□□□ -0.31
VPS52-215ENST00000464425 SULT1A3P0DMM9 295 aa13.13□□□□□ -0.31
VPS52-215ENST00000464425 SULT1A4P0DMN0 295 aa13.13□□□□□ -0.31
VPS52-215ENST00000464425 SMCO1Q147U7 214 aa13.13□□□□□ -0.31
VPS52-215ENST00000464425 C12orf45Q8N5I9 185 aaPredicted RBP13.13□□□□□ -0.31
VPS52-215ENST00000464425 DLX4Q92988 240 aaPredicted RBP13.13□□□□□ -0.31
VPS52-215ENST00000464425 USMG5Q96IX5 58 aa13.13□□□□□ -0.31
VPS52-215ENST00000464425 GPR61Q9BZJ8 451 aa13.13□□□□□ -0.31
VPS52-215ENST00000464425 IGLC7A0M8Q6 106 aa13.12□□□□□ -0.31
VPS52-215ENST00000464425 NPIPB5A8MRT5 1133 aa13.12□□□□□ -0.31
VPS52-215ENST00000464425 INS-IGF2F8WCM5 200 aa13.12□□□□□ -0.31
VPS52-215ENST00000464425 ST8SIA3O43173 380 aa13.12□□□□□ -0.31
VPS52-215ENST00000464425 OR2J3O76001 311 aa13.12□□□□□ -0.31
VPS52-215ENST00000464425 IFNA21P01568 189 aa13.12□□□□□ -0.31
VPS52-215ENST00000464425 CRYGCP07315 174 aa13.12□□□□□ -0.31
VPS52-215ENST00000464425 HOXB5P09067 269 aa13.12□□□□□ -0.31
VPS52-215ENST00000464425 PSMB6P28072 239 aa13.12□□□□□ -0.31
VPS52-215ENST00000464425 KRTAP10-11P60412 298 aa13.12□□□□□ -0.31
VPS52-215ENST00000464425 PRCDQ00LT1 54 aa13.12□□□□□ -0.31
VPS52-215ENST00000464425 ATP5G2Q06055 141 aa13.12□□□□□ -0.31
VPS52-215ENST00000464425 GGNBP1Q5YKI7 109 aa13.12□□□□□ -0.31
VPS52-215ENST00000464425 PDCD10Q9BUL8 212 aa13.12□□□□□ -0.31
VPS52-215ENST00000464425 RANGRFQ9HD47 186 aaPredicted RBP13.12□□□□□ -0.31
VPS52-215ENST00000464425 TRBV9A0A0B4J1U6 114 aa13.11□□□□□ -0.31
VPS52-215ENST00000464425 PITX3O75364 302 aa13.11□□□□□ -0.31
VPS52-215ENST00000464425 ADAP1O75689 374 aa13.11□□□□□ -0.31
VPS52-215ENST00000464425 TRBV12-3P01733 135 aa13.11□□□□□ -0.31
VPS52-215ENST00000464425 SPCS3P61009 180 aa13.11□□□□□ -0.31
VPS52-215ENST00000464425 OXA1LQ15070 435 aa13.11□□□□□ -0.31
VPS52-215ENST00000464425 ZNF343Q6P1L6 599 aa13.11□□□□□ -0.31
VPS52-215ENST00000464425 NECAP1Q8NC96 275 aa13.11□□□□□ -0.31
VPS52-215ENST00000464425 OR10W1Q8NGF6 305 aa13.11□□□□□ -0.31
VPS52-215ENST00000464425 HINT2Q9BX68 163 aa13.11□□□□□ -0.31
VPS52-215ENST00000464425 AURKAIP1Q9NWT8 199 aaPredicted RBP13.11□□□□□ -0.31
VPS52-215ENST00000464425 FAM223BA6NKX1 122 aa13.1□□□□□ -0.31
VPS52-215ENST00000464425 OVOL1O14753 267 aa13.1□□□□□ -0.31
VPS52-215ENST00000464425 IFNA17P01571 189 aa13.1□□□□□ -0.31
VPS52-215ENST00000464425 DEFA4P12838 97 aa13.1□□□□□ -0.31
VPS52-215ENST00000464425 CTRB1P17538 263 aa13.1□□□□□ -0.31
VPS52-215ENST00000464425 WT1-ASQ06250 92 aa13.1□□□□□ -0.31
VPS52-215ENST00000464425 KLK9Q2XQG4 91 aa13.1□□□□□ -0.31
VPS52-215ENST00000464425 C15orf32Q32M92 178 aa13.1□□□□□ -0.31
VPS52-215ENST00000464425 C9orf66Q5T8R8 295 aa13.1□□□□□ -0.31
VPS52-215ENST00000464425 CTRB2Q6GPI1 263 aa13.1□□□□□ -0.31
VPS52-215ENST00000464425 FAM223AQ8IWN6 122 aa13.1□□□□□ -0.31
VPS52-215ENST00000464425 PEF1Q9UBV8 284 aaKnown RBP13.1□□□□□ -0.31
VPS52-215ENST00000464425 HSPB7Q9UBY9 170 aa13.1□□□□□ -0.31
VPS52-215ENST00000464425 FBXL7Q9UJT9 491 aa13.1□□□□□ -0.31
VPS52-215ENST00000464425 KLK9Q9UKQ9 250 aa13.1□□□□□ -0.31
VPS52-215ENST00000464425 PRKDCP78527 4128 aaKnown RBP13.1□□□□□ -0.31
VPS52-215ENST00000464425 NDUFB8O95169 186 aa13.09□□□□□ -0.31
VPS52-215ENST00000464425 EGFEM1PQ0D2K5 195 aa13.09□□□□□ -0.31
VPS52-215ENST00000464425 EXOSC2Q13868 293 aaKnown RBP13.09□□□□□ -0.31
VPS52-215ENST00000464425 TATDN3Q17R31 274 aa13.09□□□□□ -0.31
VPS52-215ENST00000464425 OR1S1Q8NH92 325 aa13.09□□□□□ -0.31
VPS52-215ENST00000464425 FANCD2OSQ96PS1 177 aa13.09□□□□□ -0.31
VPS52-215ENST00000464425 PLEKHA3Q9HB20 300 aa13.09□□□□□ -0.31
VPS52-215ENST00000464425 DNAH3Q8TD57 4116 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms