RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 FCAMRQ8WWV6 532 aa16.65■□□□□ 0.26
USP4-208ENST00000464168 RNF2Q99496 336 aa16.65■□□□□ 0.26
USP4-208ENST00000464168 DIABLOQ9NR28 239 aa16.65■□□□□ 0.26
USP4-208ENST00000464168 OR51B2Q9Y5P1 312 aa16.65■□□□□ 0.26
USP4-208ENST00000464168 VPS13DQ5THJ4 4388 aa16.65■□□□□ 0.26
USP4-208ENST00000464168 KRASP01116 189 aa16.64■□□□□ 0.25
USP4-208ENST00000464168 HERV-K104P61576 105 aa16.64■□□□□ 0.25
USP4-208ENST00000464168 ZNF124Q15973 351 aa16.64■□□□□ 0.25
USP4-208ENST00000464168 Q56UQ5 140 aa16.64■□□□□ 0.25
USP4-208ENST00000464168 CADM3Q8N126 398 aa16.64■□□□□ 0.25
USP4-208ENST00000464168 BORCS5Q969J3 196 aa16.64■□□□□ 0.25
USP4-208ENST00000464168 CSTL1Q9H114 145 aa16.64■□□□□ 0.25
USP4-208ENST00000464168 CHEK1O14757 476 aa16.63■□□□□ 0.25
USP4-208ENST00000464168 RLN1P04808 185 aa16.63■□□□□ 0.25
USP4-208ENST00000464168 LPAR6P43657 344 aa16.63■□□□□ 0.25
USP4-208ENST00000464168 RFX2P48378 723 aa16.63■□□□□ 0.25
USP4-208ENST00000464168 RHPN1-AS1Q9BWJ2 59 aa16.63■□□□□ 0.25
USP4-208ENST00000464168 C6orf62Q9GZU0 229 aaPredicted RBP16.63■□□□□ 0.25
USP4-208ENST00000464168 EHFQ9NZC4 300 aa16.63■□□□□ 0.25
USP4-208ENST00000464168 G6PCP35575 357 aa16.62■□□□□ 0.25
USP4-208ENST00000464168 MOB3AQ96BX8 217 aa16.62■□□□□ 0.25
USP4-208ENST00000464168 DGCR14Q96DF8 476 aaKnown RBP16.62■□□□□ 0.25
USP4-208ENST00000464168 IGHV7-4-1A0A0J9YVY3 117 aa16.61■□□□□ 0.25
USP4-208ENST00000464168 DBX1A6NMT0 343 aa16.61■□□□□ 0.25
USP4-208ENST00000464168 MPTX1A8MV57 137 aa16.61■□□□□ 0.25
USP4-208ENST00000464168 SNAPC5O75971 98 aa16.61■□□□□ 0.25
USP4-208ENST00000464168 TMEM116Q8NCL8 245 aa16.61■□□□□ 0.25
USP4-208ENST00000464168 GATAD1Q8WUU5 269 aa16.61■□□□□ 0.25
USP4-208ENST00000464168 OR10C1Q96KK4 312 aa16.61■□□□□ 0.25
USP4-208ENST00000464168 RARRES2Q99969 163 aa16.61■□□□□ 0.25
USP4-208ENST00000464168 ZNF2Q9BSG1 426 aaPredicted RBP16.61■□□□□ 0.25
USP4-208ENST00000464168 HECTD4Q9Y4D8 3996 aa16.61■□□□□ 0.25
USP4-208ENST00000464168 IGHV3-49A0A0A0MS15 119 aa16.6■□□□□ 0.25
USP4-208ENST00000464168 LOC100506127A0A0U1RQW1 187 aa16.6■□□□□ 0.25
USP4-208ENST00000464168 TFPI2P48307 235 aa16.6■□□□□ 0.25
USP4-208ENST00000464168 CMC4P56277 68 aaPredicted RBP16.6■□□□□ 0.25
USP4-208ENST00000464168 OR1P1Q8NH06 330 aa16.6■□□□□ 0.25
USP4-208ENST00000464168 TMEM56Q96MV1 263 aa16.6■□□□□ 0.25
USP4-208ENST00000464168 IFT46Q9NQC8 304 aa16.6■□□□□ 0.25
USP4-208ENST00000464168 TMEM14BQ9NUH8 114 aa16.6■□□□□ 0.25
USP4-208ENST00000464168 PRNDQ9UKY0 176 aa16.6■□□□□ 0.25
USP4-208ENST00000464168 NUPL2O15504 423 aaKnown RBP16.59■□□□□ 0.25
USP4-208ENST00000464168 XRCC3O43542 346 aa16.59■□□□□ 0.25
USP4-208ENST00000464168 NANOS2P60321 138 aaKnown RBP16.59■□□□□ 0.25
USP4-208ENST00000464168 RELQ04864 619 aaPredicted RBP16.59■□□□□ 0.25
USP4-208ENST00000464168 FAM90A2PQ658T7 463 aa16.59■□□□□ 0.25
USP4-208ENST00000464168 FKBP11Q9NYL4 201 aa16.59■□□□□ 0.25
USP4-208ENST00000464168 ANAPC10Q9UM13 185 aa16.59■□□□□ 0.25
USP4-208ENST00000464168 IGKV3-7A0A075B6H7 116 aa16.58■□□□□ 0.24
USP4-208ENST00000464168 I3L2K1 104 aa16.58■□□□□ 0.24
USP4-208ENST00000464168 YIF1AO95070 293 aa16.58■□□□□ 0.24
USP4-208ENST00000464168 PMP2P02689 132 aa16.58■□□□□ 0.24
USP4-208ENST00000464168 CMTM1Q8IZ96 169 aa16.58■□□□□ 0.24
USP4-208ENST00000464168 OR11H2Q8NH07 326 aa16.58■□□□□ 0.24
USP4-208ENST00000464168 C11orf45Q8TAV5 145 aa16.58■□□□□ 0.24
USP4-208ENST00000464168 SLC25A46Q96AG3 418 aa16.58■□□□□ 0.24
USP4-208ENST00000464168 YTHDF1Q9BYJ9 559 aaKnown RBP16.58■□□□□ 0.24
USP4-208ENST00000464168 TRAV14DV4A0A0A6YYC5 116 aa16.57■□□□□ 0.24
USP4-208ENST00000464168 MFAP4P55083 255 aa16.57■□□□□ 0.24
USP4-208ENST00000464168 GBGT1Q8N5D6 347 aa16.57■□□□□ 0.24
USP4-208ENST00000464168 TSPAN14Q8NG11 270 aa16.57■□□□□ 0.24
USP4-208ENST00000464168 TXN2Q99757 166 aa16.57■□□□□ 0.24
USP4-208ENST00000464168 NXF2Q9GZY0 626 aaKnown RBP16.57■□□□□ 0.24
USP4-208ENST00000464168 C11orf68Q9H3H3 251 aaKnown RBP16.57■□□□□ 0.24
USP4-208ENST00000464168 FBXL17Q9UF56 701 aa16.57■□□□□ 0.24
USP4-208ENST00000464168 IGHV3OR16-13A0A075B7E8 117 aa16.56■□□□□ 0.24
USP4-208ENST00000464168 IGHV3-74A0A0B4J1X5 117 aa16.56■□□□□ 0.24
USP4-208ENST00000464168 C15orf61A6NNL5 157 aa16.56■□□□□ 0.24
USP4-208ENST00000464168 GPR31O00270 319 aa16.56■□□□□ 0.24
USP4-208ENST00000464168 NAT1P18440 290 aa16.56■□□□□ 0.24
USP4-208ENST00000464168 MISP3Q96FF7 219 aa16.56■□□□□ 0.24
USP4-208ENST00000464168 S100A16Q96FQ6 103 aaKnown RBP16.56■□□□□ 0.24
USP4-208ENST00000464168 MFFQ9GZY8 342 aa16.56■□□□□ 0.24
USP4-208ENST00000464168 FXYD6Q9H0Q3 95 aa16.56■□□□□ 0.24
USP4-208ENST00000464168 TMEM127O75204 238 aa16.55■□□□□ 0.24
USP4-208ENST00000464168 IGHV3-48P01763 117 aa16.55■□□□□ 0.24
USP4-208ENST00000464168 PRR20EP86478 221 aa16.55■□□□□ 0.24
USP4-208ENST00000464168 PRR20CP86479 221 aa16.55■□□□□ 0.24
USP4-208ENST00000464168 PRR20DP86480 221 aa16.55■□□□□ 0.24
USP4-208ENST00000464168 PRR20BP86481 221 aa16.55■□□□□ 0.24
USP4-208ENST00000464168 PRR20AP86496 221 aa16.55■□□□□ 0.24
USP4-208ENST00000464168 RBMS2Q15434 407 aaKnown RBP16.55■□□□□ 0.24
USP4-208ENST00000464168 OR5H2Q8NGV7 314 aa16.55■□□□□ 0.24
USP4-208ENST00000464168 CMTM3Q96MX0 182 aa16.55■□□□□ 0.24
USP4-208ENST00000464168 TSC22D3Q99576 134 aa16.55■□□□□ 0.24
USP4-208ENST00000464168 MT-CO2P00403 227 aa16.54■□□□□ 0.24
USP4-208ENST00000464168 IFNA4P05014 189 aa16.54■□□□□ 0.24
USP4-208ENST00000464168 TAS2R46P59540 309 aa16.54■□□□□ 0.24
USP4-208ENST00000464168 LYSMD2Q8IV50 215 aa16.54■□□□□ 0.24
USP4-208ENST00000464168 OR6F1Q8NGZ6 308 aa16.54■□□□□ 0.24
USP4-208ENST00000464168 DEFB4AO15263 64 aa16.53■□□□□ 0.24
USP4-208ENST00000464168 PHLDA2Q53GA4 152 aa16.53■□□□□ 0.24
USP4-208ENST00000464168 TCF24Q7RTU0 167 aa16.53■□□□□ 0.24
USP4-208ENST00000464168 LILRB2Q8N423 598 aa16.53■□□□□ 0.24
USP4-208ENST00000464168 ZNF114Q8NC26 417 aa16.53■□□□□ 0.24
USP4-208ENST00000464168 SEC22AQ96IW7 307 aa16.53■□□□□ 0.24
USP4-208ENST00000464168 FAM212BQ9NTI7 297 aaPredicted RBP16.53■□□□□ 0.24
USP4-208ENST00000464168 DNAH6Q9C0G6 4158 aa16.52■□□□□ 0.24
USP4-208ENST00000464168 CA1P00915 261 aaPredicted RBP16.52■□□□□ 0.24
USP4-208ENST00000464168 TAS2R20P59543 309 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms