RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 ACOT6Q3I5F7 207 aaPredicted RBP0.92□□□□□ -2.26
USP40-209ENST00000452724 Q8N2B8 174 aa0.92□□□□□ -2.26
USP40-209ENST00000452724 LRRC25Q8N386 305 aaPredicted RBP0.92□□□□□ -2.26
USP40-209ENST00000452724 OR8J2Q8NGG1 315 aa0.92□□□□□ -2.26
USP40-209ENST00000452724 OR8B3Q8NGG8 313 aa0.92□□□□□ -2.26
USP40-209ENST00000452724 OR8D2Q9GZM6 311 aa0.92□□□□□ -2.26
USP40-209ENST00000452724 EFCAB1Q9HAE3 211 aa0.92□□□□□ -2.26
USP40-209ENST00000452724 IL36BQ9NZH7 164 aa0.92□□□□□ -2.26
USP40-209ENST00000452724 TNNC2P02585 160 aa0.91□□□□□ -2.26
USP40-209ENST00000452724 METTL15P1P0C7V9 234 aa0.91□□□□□ -2.26
USP40-209ENST00000452724 HIST1H1TP22492 207 aaPredicted RBP0.91□□□□□ -2.26
USP40-209ENST00000452724 HLA-DMBP28068 263 aa0.91□□□□□ -2.26
USP40-209ENST00000452724 OMPP47874 163 aa0.91□□□□□ -2.26
USP40-209ENST00000452724 SPCS3P61009 180 aa0.91□□□□□ -2.26
USP40-209ENST00000452724 STX5Q13190 355 aa0.91□□□□□ -2.26
USP40-209ENST00000452724 Q6ZS49 121 aa0.91□□□□□ -2.26
USP40-209ENST00000452724 DHFR2Q86XF0 187 aa0.91□□□□□ -2.26
USP40-209ENST00000452724 OR13C4Q8NGS5 318 aa0.91□□□□□ -2.26
USP40-209ENST00000452724 C11orf40Q8WZ69 217 aa0.91□□□□□ -2.26
USP40-209ENST00000452724 WDR61Q9GZS3 305 aaKnown RBP0.91□□□□□ -2.26
USP40-209ENST00000452724 PRTFDC1Q9NRG1 225 aa0.91□□□□□ -2.26
USP40-209ENST00000452724 CISHQ9NSE2 258 aa0.91□□□□□ -2.26
USP40-209ENST00000452724 PLB1Q6P1J6 1458 aa0.91□□□□□ -2.26
USP40-209ENST00000452724 SMARCA4P51532 1647 aa0.9□□□□□ -2.26
USP40-209ENST00000452724 GREB1Q4ZG55 1949 aa0.9□□□□□ -2.27
USP40-209ENST00000452724 TGIF2-C20orf24A0A0A6YYL0 155 aa0.9□□□□□ -2.27
USP40-209ENST00000452724 A0A0J9YY10 115 aa0.9□□□□□ -2.27
USP40-209ENST00000452724 A0A1B0GX78 115 aa0.9□□□□□ -2.27
USP40-209ENST00000452724 GGT3PA6NGU5 568 aa0.9□□□□□ -2.27
USP40-209ENST00000452724 PSMD12O00232 456 aaPredicted RBP0.9□□□□□ -2.27
USP40-209ENST00000452724 KPNA3O00505 521 aaPredicted RBP0.9□□□□□ -2.27
USP40-209ENST00000452724 SDCBPO00560 298 aaPredicted RBP0.9□□□□□ -2.27
USP40-209ENST00000452724 HLA-DRB1P01911 266 aa0.9□□□□□ -2.27
USP40-209ENST00000452724 ZNF80P51504 273 aaPredicted RBP0.9□□□□□ -2.27
USP40-209ENST00000452724 C8orf74Q6P047 294 aa0.9□□□□□ -2.27
USP40-209ENST00000452724 RPL22L1Q6P5R6 122 aaKnown RBP0.9□□□□□ -2.27
USP40-209ENST00000452724 OR5B17Q8NGF7 314 aa0.9□□□□□ -2.27
USP40-209ENST00000452724 MRPL30Q8TCC3 161 aaKnown RBP0.9□□□□□ -2.27
USP40-209ENST00000452724 RASSF5Q8WWW0 418 aa0.9□□□□□ -2.27
USP40-209ENST00000452724 DCUN1D1Q96GG9 259 aa0.9□□□□□ -2.27
USP40-209ENST00000452724 NIPSNAP1Q9BPW8 284 aa0.9□□□□□ -2.27
USP40-209ENST00000452724 C20orf27Q9GZN8 174 aa0.9□□□□□ -2.27
USP40-209ENST00000452724 COMMD5Q9GZQ3 224 aa0.9□□□□□ -2.27
USP40-209ENST00000452724 MRPL27Q9P0M9 148 aaKnown RBP0.9□□□□□ -2.27
USP40-209ENST00000452724 LHFPL6Q9Y693 200 aa0.9□□□□□ -2.27
USP40-209ENST00000452724 KIF24Q5T7B8 1368 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 TONSLQ96HA7 1378 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 PQLC2LA1A4F0 135 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 CLDN24A6NM45 220 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 RPP14O95059 124 aaKnown RBP0.89□□□□□ -2.27
USP40-209ENST00000452724 TTRP02766 147 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 UBBP0CG47 229 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 HIST1H2BOP23527 126 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 HIST1H2BBP33778 126 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 HIST1H2BDP58876 126 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 HIST1H2BCP62807 126 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 CTAG1AP78358 180 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 HIST2H2BEQ16778 126 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 HIST2H2BFQ5QNW6 126 aaPredicted RBP0.89□□□□□ -2.27
USP40-209ENST00000452724 SPOPLQ6IQ16 392 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 TRAPPC5Q8IUR0 188 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 CLDN22Q8N7P3 220 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 OR51D1Q8NGF3 324 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 OR2T4Q8NH00 348 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 MCFD2Q8NI22 146 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 HIST1H2BHQ93079 126 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 CCDC42Q96M95 316 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 HIST1H2BNQ99877 126 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 HIST1H2BMQ99879 126 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 DERL1Q9BUN8 251 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 PARD6GQ9BYG4 376 aaPredicted RBP0.89□□□□□ -2.27
USP40-209ENST00000452724 BAIAP2Q9UQB8 552 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 DLG5Q8TDM6 1919 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 MYO3BQ8WXR4 1341 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 ARFGEF3Q5TH69 2177 aa0.89□□□□□ -2.27
USP40-209ENST00000452724 SNAPC4Q5SXM2 1469 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 NUP155O75694 1391 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 IGKV2D-26A0A0A0MRZ7 120 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 CHP2O43745 196 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 E2F6O75461 281 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 IFNA10P01566 189 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 RPS4Y1P22090 263 aaKnown RBP0.88□□□□□ -2.27
USP40-209ENST00000452724 SNRPD2P62316 118 aaKnown RBP0.88□□□□□ -2.27
USP40-209ENST00000452724 HBA1P69905 142 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 ITGB3BPQ13352 177 aaPredicted RBP0.88□□□□□ -2.27
USP40-209ENST00000452724 ZNF345Q14585 488 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 IAH1Q2TAA2 248 aaPredicted RBP0.88□□□□□ -2.27
USP40-209ENST00000452724 SPANXN3Q5MJ09 141 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 AADACL3Q5VUY0 350 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 LPCAT3Q6P1A2 487 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 TMEM106AQ96A25 262 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 BORCS7Q96B45 105 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 TOMM6Q96B49 74 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 PPP1R2P1Q96PQ5 205 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 ULBP3Q9BZM4 244 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 YIPF3Q9GZM5 350 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 UCK1Q9HA47 277 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 FBXL12Q9NXK8 326 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 TMEM56-RWDD3S4R434 201 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 HEATR5BQ9P2D3 2071 aa0.88□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms