RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 OR1L8Q8NGR8 309 aa13.02□□□□□ -0.33
SHQ1-202ENST00000444040 CHODLQ9H9P2 273 aa13.02□□□□□ -0.33
SHQ1-202ENST00000444040 YLPM1P49750 1951 aaKnown RBP13.02□□□□□ -0.33
SHQ1-202ENST00000444040 MT-CO2P00403 227 aa13.01□□□□□ -0.33
SHQ1-202ENST00000444040 MLANAQ16655 118 aa13.01□□□□□ -0.33
SHQ1-202ENST00000444040 PFDN5Q99471 154 aa13.01□□□□□ -0.33
SHQ1-202ENST00000444040 SH3BGRL2Q9UJC5 107 aa13.01□□□□□ -0.33
SHQ1-202ENST00000444040 RP1L1Q8IWN7 2480 aaPredicted RBP13.01□□□□□ -0.33
SHQ1-202ENST00000444040 MDFIC2A0A1B0GVS7 189 aa13.01□□□□□ -0.33
SHQ1-202ENST00000444040 ACTL6BO94805 426 aa13.01□□□□□ -0.33
SHQ1-202ENST00000444040 AREGP15514 252 aa13.01□□□□□ -0.33
SHQ1-202ENST00000444040 TMEM177Q53S58 311 aa13.01□□□□□ -0.33
SHQ1-202ENST00000444040 TEX38Q6PEX7 206 aa13.01□□□□□ -0.33
SHQ1-202ENST00000444040 SGMS2Q8NHU3 365 aa13.01□□□□□ -0.33
SHQ1-202ENST00000444040 RNASEH2CQ8TDP1 164 aaKnown RBP13.01□□□□□ -0.33
SHQ1-202ENST00000444040 HARBI1Q96MB7 349 aa13.01□□□□□ -0.33
SHQ1-202ENST00000444040 NDUFA4L2Q9NRX3 87 aa13.01□□□□□ -0.33
SHQ1-202ENST00000444040 APOA2P02652 100 aa13□□□□□ -0.33
SHQ1-202ENST00000444040 LYPD2Q6UXB3 125 aa13□□□□□ -0.33
SHQ1-202ENST00000444040 ZNF835Q9Y2P0 537 aa13□□□□□ -0.33
SHQ1-202ENST00000444040 TNCP24821 2201 aa13□□□□□ -0.33
SHQ1-202ENST00000444040 A0A0U1RQK1 487 aa13□□□□□ -0.33
SHQ1-202ENST00000444040 ZNF320A2RRD8 509 aa13□□□□□ -0.33
SHQ1-202ENST00000444040 K7EN84 100 aa13□□□□□ -0.33
SHQ1-202ENST00000444040 GATA2P23769 480 aaPredicted RBP13□□□□□ -0.33
SHQ1-202ENST00000444040 NBL1P41271 181 aa13□□□□□ -0.33
SHQ1-202ENST00000444040 GFRALQ6UXV0 394 aa13□□□□□ -0.33
SHQ1-202ENST00000444040 CCL17Q92583 94 aa13□□□□□ -0.33
SHQ1-202ENST00000444040 ZNF503Q96F45 646 aa13□□□□□ -0.33
SHQ1-202ENST00000444040 BTF3L4Q96K17 158 aa13□□□□□ -0.33
SHQ1-202ENST00000444040 TMEM106BQ9NUM4 274 aa13□□□□□ -0.33
SHQ1-202ENST00000444040 SSUH2Q9Y2M2 353 aa13□□□□□ -0.33
SHQ1-202ENST00000444040 ARL2-SNX15V9GYD0 113 aa13□□□□□ -0.33
SHQ1-202ENST00000444040 CUL9Q8IWT3 2517 aa13□□□□□ -0.33
SHQ1-202ENST00000444040 E7EUB6 86 aa12.99□□□□□ -0.33
SHQ1-202ENST00000444040 CHRNB4P30926 498 aa12.99□□□□□ -0.33
SHQ1-202ENST00000444040 OR10J1P30954 320 aa12.99□□□□□ -0.33
SHQ1-202ENST00000444040 REG1BP48304 166 aa12.99□□□□□ -0.33
SHQ1-202ENST00000444040 CD69Q07108 199 aa12.99□□□□□ -0.33
SHQ1-202ENST00000444040 ZNF596Q8TC21 504 aa12.99□□□□□ -0.33
SHQ1-202ENST00000444040 SLC35E1Q96K37 410 aa12.99□□□□□ -0.33
SHQ1-202ENST00000444040 C9JCJ5 164 aa12.99□□□□□ -0.33
SHQ1-202ENST00000444040 INS-IGF2F8WCM5 200 aa12.99□□□□□ -0.33
SHQ1-202ENST00000444040 HNF1AP20823 631 aa12.99□□□□□ -0.33
SHQ1-202ENST00000444040 DIAPH2-AS1Q14236 149 aa12.99□□□□□ -0.33
SHQ1-202ENST00000444040 FAM209BQ5JX69 171 aa12.99□□□□□ -0.33
SHQ1-202ENST00000444040 CTSZQ9UBR2 303 aa12.99□□□□□ -0.33
SHQ1-202ENST00000444040 RIF1Q5UIP0 2472 aaKnown RBP12.99□□□□□ -0.33
SHQ1-202ENST00000444040 DVL1O14640 695 aa12.98□□□□□ -0.33
SHQ1-202ENST00000444040 RPL8P62917 257 aaKnown RBP12.98□□□□□ -0.33
SHQ1-202ENST00000444040 PSG5Q15238 335 aa12.98□□□□□ -0.33
SHQ1-202ENST00000444040 C9orf152Q5JTZ5 239 aa12.98□□□□□ -0.33
SHQ1-202ENST00000444040 PNKDQ8N490 385 aa12.98□□□□□ -0.33
SHQ1-202ENST00000444040 OR10G8Q8NGN5 311 aa12.98□□□□□ -0.33
SHQ1-202ENST00000444040 OR9G1Q8NH87 305 aa12.98□□□□□ -0.33
SHQ1-202ENST00000444040 FLYWCH2Q96CP2 140 aaKnown RBP12.98□□□□□ -0.33
SHQ1-202ENST00000444040 UHRF2Q96PU4 802 aa12.98□□□□□ -0.33
SHQ1-202ENST00000444040 OR5G3P0C626 314 aa12.98□□□□□ -0.33
SHQ1-202ENST00000444040 JOSD1Q15040 202 aaPredicted RBP12.98□□□□□ -0.33
SHQ1-202ENST00000444040 SSX8Q7RTT4 187 aa12.98□□□□□ -0.33
SHQ1-202ENST00000444040 LINC00311Q8N616 119 aa12.98□□□□□ -0.33
SHQ1-202ENST00000444040 H1FXQ92522 213 aaKnown RBP12.98□□□□□ -0.33
SHQ1-202ENST00000444040 RNASE6Q93091 150 aaKnown RBP12.98□□□□□ -0.33
SHQ1-202ENST00000444040 ST6GALNAC6Q969X2 333 aa12.98□□□□□ -0.33
SHQ1-202ENST00000444040 COMMD5Q9GZQ3 224 aa12.98□□□□□ -0.33
SHQ1-202ENST00000444040 LY96Q9Y6Y9 160 aa12.98□□□□□ -0.33
SHQ1-202ENST00000444040 ZFHX2Q9C0A1 2572 aaPredicted RBP12.98□□□□□ -0.33
SHQ1-202ENST00000444040 NDUFB3O43676 98 aa12.98□□□□□ -0.33
SHQ1-202ENST00000444040 C8orf31Q8N9H6 132 aa12.98□□□□□ -0.33
SHQ1-202ENST00000444040 WFIKKN1Q96NZ8 548 aa12.98□□□□□ -0.33
SHQ1-202ENST00000444040 TMEM167BQ9NRX6 74 aa12.98□□□□□ -0.33
SHQ1-202ENST00000444040 TECRQ9NZ01 308 aaKnown RBP12.98□□□□□ -0.33
SHQ1-202ENST00000444040 CGB1A6NKQ9 187 aa12.97□□□□□ -0.33
SHQ1-202ENST00000444040 CNN1P51911 297 aaKnown RBP12.97□□□□□ -0.33
SHQ1-202ENST00000444040 HLA-DRB5Q30154 266 aa12.97□□□□□ -0.33
SHQ1-202ENST00000444040 FAM71F2Q6NXP2 309 aa12.97□□□□□ -0.33
SHQ1-202ENST00000444040 OR4C13Q8NGP0 309 aa12.97□□□□□ -0.33
SHQ1-202ENST00000444040 OR5R1Q8NH85 324 aa12.97□□□□□ -0.33
SHQ1-202ENST00000444040 TMEM167AQ8TBQ9 72 aa12.97□□□□□ -0.33
SHQ1-202ENST00000444040 EAF1Q96JC9 268 aaPredicted RBP12.97□□□□□ -0.33
SHQ1-202ENST00000444040 C19orf24Q9BVV8 132 aa12.97□□□□□ -0.33
SHQ1-202ENST00000444040 TRAPPC1Q9Y5R8 145 aa12.97□□□□□ -0.33
SHQ1-202ENST00000444040 ANKRD11Q6UB99 2663 aaPredicted RBP12.97□□□□□ -0.33
SHQ1-202ENST00000444040 ATMQ13315 3056 aa12.97□□□□□ -0.33
SHQ1-202ENST00000444040 USF1P22415 310 aaPredicted RBP12.97□□□□□ -0.33
SHQ1-202ENST00000444040 LOXP28300 417 aaPredicted RBP12.97□□□□□ -0.33
SHQ1-202ENST00000444040 DLX6P56179 175 aa12.97□□□□□ -0.33
SHQ1-202ENST00000444040 LRRC10Q5BKY1 277 aa12.97□□□□□ -0.33
SHQ1-202ENST00000444040 OR10X1Q8NGY0 326 aa12.97□□□□□ -0.33
SHQ1-202ENST00000444040 CACNG8Q8WXS5 425 aa12.97□□□□□ -0.33
SHQ1-202ENST00000444040 TMEM186Q96B77 213 aa12.97□□□□□ -0.33
SHQ1-202ENST00000444040 CEP250Q9BV73 2442 aa12.97□□□□□ -0.33
SHQ1-202ENST00000444040 SHISA9B4DS77 424 aa12.96□□□□□ -0.33
SHQ1-202ENST00000444040 IGLV2-23P01705 113 aa12.96□□□□□ -0.33
SHQ1-202ENST00000444040 GZMBP10144 247 aa12.96□□□□□ -0.33
SHQ1-202ENST00000444040 PQLC2Q6ZP29 291 aa12.96□□□□□ -0.33
SHQ1-202ENST00000444040 PDPNQ86YL7 162 aa12.96□□□□□ -0.33
SHQ1-202ENST00000444040 PSMB11A5LHX3 300 aa12.96□□□□□ -0.34
SHQ1-202ENST00000444040 DLL1O00548 723 aa12.96□□□□□ -0.34
SHQ1-202ENST00000444040 GPX4P36969 197 aaPredicted RBP12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms