RNA–Protein interactions for RNA: ENST00000424143.5

C9orf3-204, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 1,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-204ENST00000424143 MED13Q9UHV7 2174 aa12.46□□□□□ -0.41
C9orf3-204ENST00000424143 IGHV1-18A0A0C4DH31 117 aa12.46□□□□□ -0.41
C9orf3-204ENST00000424143 HNF1AP20823 631 aa12.46□□□□□ -0.41
C9orf3-204ENST00000424143 CASP6P55212 293 aa12.46□□□□□ -0.41
C9orf3-204ENST00000424143 SUMO1P63165 101 aaKnown RBP12.46□□□□□ -0.41
C9orf3-204ENST00000424143 PMCHL1Q16048 86 aa12.46□□□□□ -0.41
C9orf3-204ENST00000424143 MBD6Q96DN6 1003 aa12.46□□□□□ -0.41
C9orf3-204ENST00000424143 SMIM12Q96EX1 92 aa12.46□□□□□ -0.41
C9orf3-204ENST00000424143 ZNF714Q96N38 554 aa12.46□□□□□ -0.41
C9orf3-204ENST00000424143 SLC25A33Q9BSK2 321 aa12.46□□□□□ -0.41
C9orf3-204ENST00000424143 PAM16Q9Y3D7 125 aa12.46□□□□□ -0.41
C9orf3-204ENST00000424143 TBL2Q9Y4P3 447 aaKnown RBP12.46□□□□□ -0.41
C9orf3-204ENST00000424143 J3QR06 171 aa12.45□□□□□ -0.42
C9orf3-204ENST00000424143 BMPR1BO00238 502 aa12.45□□□□□ -0.42
C9orf3-204ENST00000424143 AGFG2O95081 481 aa12.45□□□□□ -0.42
C9orf3-204ENST00000424143 TFF1P04155 84 aa12.45□□□□□ -0.42
C9orf3-204ENST00000424143 SAA2P0DJI9 122 aaPredicted RBP12.45□□□□□ -0.42
C9orf3-204ENST00000424143 SELENOVP59797 346 aa12.45□□□□□ -0.42
C9orf3-204ENST00000424143 FAM162BQ5T6X4 162 aa12.45□□□□□ -0.42
C9orf3-204ENST00000424143 LOXL4Q96JB6 756 aa12.45□□□□□ -0.42
C9orf3-204ENST00000424143 TRIB1Q96RU8 372 aa12.45□□□□□ -0.42
C9orf3-204ENST00000424143 ZNF71Q9NQZ8 489 aaPredicted RBP12.45□□□□□ -0.42
C9orf3-204ENST00000424143 CACNA1GO43497 2377 aa12.45□□□□□ -0.42
C9orf3-204ENST00000424143 PSMB11A5LHX3 300 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 OR2J3O76001 311 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 IGLC2P0DOY2 106 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 IGLC3P0DOY3 106 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 AMTP48728 403 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 OR5I1Q13606 314 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 LTC4SQ16873 150 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 DMRTA1Q5VZB9 504 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 IGFL2Q6UWQ7 119 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 C1orf229Q6ZS94 237 aaPredicted RBP12.44□□□□□ -0.42
C9orf3-204ENST00000424143 OR2Z1Q8NG97 314 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 SARAFQ96BY9 339 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 RBM14Q96PK6 669 aaKnown RBP12.44□□□□□ -0.42
C9orf3-204ENST00000424143 MRPS16Q9Y3D3 137 aaKnown RBP12.44□□□□□ -0.42
C9orf3-204ENST00000424143 CBY1Q9Y3M2 126 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 YLPM1P49750 1951 aaKnown RBP12.44□□□□□ -0.42
C9orf3-204ENST00000424143 AHRRA9YTQ3 701 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 GGTLC3B5MD39 225 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 F2Z2F3 143 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 APCSP02743 223 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 CD59P13987 128 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 ZNF83P51522 516 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 CD69Q07108 199 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 IBA57Q5T440 356 aaKnown RBP12.44□□□□□ -0.42
C9orf3-204ENST00000424143 NIT1Q86X76 327 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 TMEM190Q8WZ59 177 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 GRAMD2BQ96HH9 432 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 OR2V2Q96R30 315 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 ZNF331Q9NQX6 463 aaPredicted RBP12.44□□□□□ -0.42
C9orf3-204ENST00000424143 SLC25A15Q9Y619 301 aa12.44□□□□□ -0.42
C9orf3-204ENST00000424143 TEX50A0A1B0GTY4 177 aa12.43□□□□□ -0.42
C9orf3-204ENST00000424143 RNASE2P10153 161 aaKnown RBP12.43□□□□□ -0.42
C9orf3-204ENST00000424143 CD33P20138 364 aa12.43□□□□□ -0.42
C9orf3-204ENST00000424143 GLRXP35754 106 aa12.43□□□□□ -0.42
C9orf3-204ENST00000424143 KRTDAPP60985 99 aa12.43□□□□□ -0.42
C9orf3-204ENST00000424143 SPATA45Q537H7 98 aa12.43□□□□□ -0.42
C9orf3-204ENST00000424143 SLC25A48Q6ZT89 311 aaKnown RBP12.43□□□□□ -0.42
C9orf3-204ENST00000424143 BHLHA15Q7RTS1 189 aaPredicted RBP12.43□□□□□ -0.42
C9orf3-204ENST00000424143 ATP5L2Q7Z4Y8 100 aa12.43□□□□□ -0.42
C9orf3-204ENST00000424143 FAM167A-AS1Q96KT0 104 aa12.43□□□□□ -0.42
C9orf3-204ENST00000424143 C1RLQ9NZP8 487 aa12.43□□□□□ -0.42
C9orf3-204ENST00000424143 IGLV3-9A0A075B6K5 115 aa12.42□□□□□ -0.42
C9orf3-204ENST00000424143 DPRXA6NFQ7 191 aa12.42□□□□□ -0.42
C9orf3-204ENST00000424143 CNEP1R1Q8N9A8 125 aa12.42□□□□□ -0.42
C9orf3-204ENST00000424143 C9orf106Q8NAJ2 232 aa12.42□□□□□ -0.42
C9orf3-204ENST00000424143 OR1L4Q8NGR5 311 aa12.42□□□□□ -0.42
C9orf3-204ENST00000424143 OR4A5Q8NH83 315 aa12.42□□□□□ -0.42
C9orf3-204ENST00000424143 OSR1Q8TAX0 266 aaPredicted RBP12.42□□□□□ -0.42
C9orf3-204ENST00000424143 TSKUQ8WUA8 353 aa12.42□□□□□ -0.42
C9orf3-204ENST00000424143 ORAOV1Q8WV07 137 aa12.42□□□□□ -0.42
C9orf3-204ENST00000424143 STARD4Q96DR4 205 aa12.42□□□□□ -0.42
C9orf3-204ENST00000424143 SLC35D1Q9NTN3 355 aa12.42□□□□□ -0.42
C9orf3-204ENST00000424143 DSCAML1Q8TD84 2053 aa12.42□□□□□ -0.42
C9orf3-204ENST00000424143 IGKV1OR2-108A0A075B7D4 117 aa12.41□□□□□ -0.42
C9orf3-204ENST00000424143 DLL1O00548 723 aa12.41□□□□□ -0.42
C9orf3-204ENST00000424143 FRMD6-AS1P0C7T7 363 aa12.41□□□□□ -0.42
C9orf3-204ENST00000424143 C3orf79P0CE67 100 aa12.41□□□□□ -0.42
C9orf3-204ENST00000424143 HOXA4Q00056 320 aaPredicted RBP12.41□□□□□ -0.42
C9orf3-204ENST00000424143 STUMQ69YW2 141 aa12.41□□□□□ -0.42
C9orf3-204ENST00000424143 VWA1Q6PCB0 445 aa12.41□□□□□ -0.42
C9orf3-204ENST00000424143 DOLPP1Q86YN1 238 aa12.41□□□□□ -0.42
C9orf3-204ENST00000424143 RNASE7Q9H1E1 156 aaKnown RBP12.41□□□□□ -0.42
C9orf3-204ENST00000424143 DNAJC4Q9NNZ3 241 aa12.41□□□□□ -0.42
C9orf3-204ENST00000424143 RPUSD1Q9UJJ7 312 aaKnown RBP12.41□□□□□ -0.42
C9orf3-204ENST00000424143 OR7C2O60412 319 aa12.4□□□□□ -0.42
C9orf3-204ENST00000424143 SRIP30626 198 aa12.4□□□□□ -0.42
C9orf3-204ENST00000424143 AHCTF1Q8WYP5 2266 aa12.4□□□□□ -0.42
C9orf3-204ENST00000424143 BORCS7Q96B45 105 aa12.4□□□□□ -0.42
C9orf3-204ENST00000424143 RNF7Q9UBF6 113 aa12.4□□□□□ -0.42
C9orf3-204ENST00000424143 PROCRQ9UNN8 238 aa12.4□□□□□ -0.42
C9orf3-204ENST00000424143 RNF114Q9Y508 228 aa12.4□□□□□ -0.42
C9orf3-204ENST00000424143 SOX21Q9Y651 276 aaPredicted RBP12.4□□□□□ -0.42
C9orf3-204ENST00000424143 WDR87Q6ZQQ6 2873 aa12.4□□□□□ -0.42
C9orf3-204ENST00000424143 A0A1W2PN81 502 aa12.4□□□□□ -0.42
C9orf3-204ENST00000424143 HYPMO75409 117 aa12.4□□□□□ -0.42
C9orf3-204ENST00000424143 ACTL6BO94805 426 aa12.4□□□□□ -0.42
C9orf3-204ENST00000424143 NPSP0C0P6 89 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms