RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 CXorf66Q5JRM2 361 aaPredicted RBP7.47□□□□□ -1.21
LIG3-202ENST00000378526 JMJD8Q96S16 334 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 MBNL3Q9NUK0 354 aaKnown RBP7.47□□□□□ -1.21
LIG3-202ENST00000378526 ATRAIDQ6UW56 229 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 SF3B5Q9BWJ5 86 aaKnown RBP7.47□□□□□ -1.21
LIG3-202ENST00000378526 ZNF142P52746 1687 aaPredicted RBP7.47□□□□□ -1.21
LIG3-202ENST00000378526 WFDC3Q8IUB2 231 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 FAM181AQ8N9Y4 354 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 NABP1Q96AH0 204 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 LINC00615Q96LM1 132 aaPredicted RBP7.47□□□□□ -1.21
LIG3-202ENST00000378526 ST6GALNAC2Q9UJ37 374 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 WNK3Q9BYP7 1800 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 COLCA2A8K830 154 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 SLC25A48Q6ZT89 311 aaKnown RBP7.47□□□□□ -1.21
LIG3-202ENST00000378526 ZNF664Q8N3J9 261 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 PRDM14Q9GZV8 571 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 NPIPB11E5RHQ5 1161 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 ICAM4Q14773 271 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 PRR14LQ5THK1 2151 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 SMAD7O15105 426 aaKnown RBP7.47□□□□□ -1.21
LIG3-202ENST00000378526 IGHV2-70P01814 119 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 CXCL16Q9H2A7 254 aa7.47□□□□□ -1.21
LIG3-202ENST00000378526 A0A1W2PPM0 123 aa7.46□□□□□ -1.21
LIG3-202ENST00000378526 FAM231BA6NCW3 169 aa7.46□□□□□ -1.21
LIG3-202ENST00000378526 DMRTC1Q5HYR2 192 aa7.46□□□□□ -1.21
LIG3-202ENST00000378526 ANAPC10Q9UM13 185 aa7.46□□□□□ -1.21
LIG3-202ENST00000378526 U3KQE9 123 aa7.46□□□□□ -1.21
LIG3-202ENST00000378526 PTPRFP10586 1907 aa7.46□□□□□ -1.21
LIG3-202ENST00000378526 MED13Q9UHV7 2174 aa7.46□□□□□ -1.21
LIG3-202ENST00000378526 DTX2Q86UW9 622 aa7.46□□□□□ -1.21
LIG3-202ENST00000378526 SIPA1L1O43166 1804 aa7.46□□□□□ -1.22
LIG3-202ENST00000378526 TRAV13-1A0A0B4J241 112 aa7.46□□□□□ -1.22
LIG3-202ENST00000378526 PGLYRP1O75594 196 aaPredicted RBP7.46□□□□□ -1.22
LIG3-202ENST00000378526 TSPAN7P41732 249 aa7.46□□□□□ -1.22
LIG3-202ENST00000378526 OR5P3Q8WZ94 311 aa7.46□□□□□ -1.22
LIG3-202ENST00000378526 LINC00158P58513 81 aa7.46□□□□□ -1.22
LIG3-202ENST00000378526 TSKUQ8WUA8 353 aa7.46□□□□□ -1.22
LIG3-202ENST00000378526 R4GN57 208 aa7.46□□□□□ -1.22
LIG3-202ENST00000378526 KDM3BQ7LBC6 1761 aa7.46□□□□□ -1.22
LIG3-202ENST00000378526 ZGLP1P0C6A0 271 aa7.46□□□□□ -1.22
LIG3-202ENST00000378526 NPPCP23582 126 aa7.46□□□□□ -1.22
LIG3-202ENST00000378526 FOXD3Q9UJU5 478 aaPredicted RBP7.46□□□□□ -1.22
LIG3-202ENST00000378526 MMP23AO75900 390 aa7.46□□□□□ -1.22
LIG3-202ENST00000378526 CD5P06127 495 aa7.46□□□□□ -1.22
LIG3-202ENST00000378526 CD28P10747 220 aa7.46□□□□□ -1.22
LIG3-202ENST00000378526 FER1L4A9Z1Z3 1794 aa7.46□□□□□ -1.22
LIG3-202ENST00000378526 DOCK2Q92608 1830 aa7.46□□□□□ -1.22
LIG3-202ENST00000378526 CD33P20138 364 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 GLRXP35754 106 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 IGHV1-24A0A0C4DH33 117 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 PAX4O43316 350 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 NPSP0C0P6 89 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 SAXO1Q8IYX7 474 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 DEFB127Q9H1M4 99 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 ZNF703Q9H7S9 590 aaPredicted RBP7.45□□□□□ -1.22
LIG3-202ENST00000378526 MYMXA0A1B0GTQ4 84 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 ZNF708P17019 499 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 RND2P52198 227 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 RNF7Q9UBF6 113 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 EML5Q05BV3 1969 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 PCDH15Q96QU1 1955 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 EEF1AKMT3Q96AZ1 226 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 KIDINS220Q9ULH0 1771 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 IFNL4K9M1U5 179 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 TAX1BP3O14907 124 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 TMEM187Q14656 261 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 SPRYD7Q5W111 196 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 ZNRF1Q8ND25 227 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 A0A0U1RQS6 177 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 A0A1W2PPC1 479 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 FABP5P3A8MUU1 101 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 TBX6O95947 436 aaPredicted RBP7.45□□□□□ -1.22
LIG3-202ENST00000378526 HOXB3P14651 431 aaPredicted RBP7.45□□□□□ -1.22
LIG3-202ENST00000378526 UCP2P55851 309 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 MRPS18BQ9Y676 258 aaKnown RBP7.45□□□□□ -1.22
LIG3-202ENST00000378526 EDIL3O43854 480 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 OTORQ9NRC9 128 aa7.45□□□□□ -1.22
LIG3-202ENST00000378526 TRGV5A0A0B4J1U4 118 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 PXNP49023 591 aaPredicted RBP7.44□□□□□ -1.22
LIG3-202ENST00000378526 UNC119Q13432 240 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 CNRIP1Q96F85 164 aaPredicted RBP7.44□□□□□ -1.22
LIG3-202ENST00000378526 LHX9Q9NQ69 397 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 IGHG3P01860 377 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 FOXG1P55316 489 aaPredicted RBP7.44□□□□□ -1.22
LIG3-202ENST00000378526 PRADC1Q9BSG0 188 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 ARFGEF1Q9Y6D6 1849 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 hCG_38984A0A1B0GV85 526 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 CGAP01215 116 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 IGHG2P01859 326 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 RGPD4Q7Z3J3 1758 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 A0A1W2PPI3 338 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 H3BTX0 84 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 ZNF83P51522 516 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 FBLIM1Q8WUP2 373 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 F8VVB4 439 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 F8VWA3 439 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 IGHV3-13P01766 116 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 IGHV3-7P01780 117 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 TIMP3P35625 211 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 PTGDSP41222 190 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms