RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 PDE6DO43924 150 aa15.76■□□□□ 0.11
COL9A3-201ENST00000343916 FOXH1O75593 365 aa15.76■□□□□ 0.11
COL9A3-201ENST00000343916 AMBPP02760 352 aa15.76■□□□□ 0.11
COL9A3-201ENST00000343916 MEF2CQ06413 473 aaPredicted RBP15.76■□□□□ 0.11
COL9A3-201ENST00000343916 TMEM249Q2WGJ8 235 aa15.76■□□□□ 0.11
COL9A3-201ENST00000343916 A0A1W2PPQ1 181 aa15.75■□□□□ 0.11
COL9A3-201ENST00000343916 E7EQL1 145 aa15.75■□□□□ 0.11
COL9A3-201ENST00000343916 CXorf1O96002 111 aa15.75■□□□□ 0.11
COL9A3-201ENST00000343916 CHRNB4P30926 498 aa15.75■□□□□ 0.11
COL9A3-201ENST00000343916 CHRNA7P36544 502 aa15.75■□□□□ 0.11
COL9A3-201ENST00000343916 TMEM30BQ3MIR4 351 aa15.75■□□□□ 0.11
COL9A3-201ENST00000343916 DMRTC2Q8IXT2 367 aaPredicted RBP15.75■□□□□ 0.11
COL9A3-201ENST00000343916 ZNF114Q8NC26 417 aa15.75■□□□□ 0.11
COL9A3-201ENST00000343916 DYNLRB1Q9NP97 96 aa15.75■□□□□ 0.11
COL9A3-201ENST00000343916 KCNIP2Q9NS61 270 aa15.75■□□□□ 0.11
COL9A3-201ENST00000343916 ZNF257Q9Y2Q1 563 aa15.75■□□□□ 0.11
COL9A3-201ENST00000343916 TPRP12270 2363 aaKnown RBP15.75■□□□□ 0.11
COL9A3-201ENST00000343916 IGKV1OR2-108A0A075B7D4 117 aa15.75■□□□□ 0.11
COL9A3-201ENST00000343916 H0YJW9 148 aa15.75■□□□□ 0.11
COL9A3-201ENST00000343916 DVL1O14640 695 aa15.75■□□□□ 0.11
COL9A3-201ENST00000343916 ACTL6BO94805 426 aa15.75■□□□□ 0.11
COL9A3-201ENST00000343916 DNLZQ5SXM8 178 aa15.75■□□□□ 0.11
COL9A3-201ENST00000343916 LINC01551Q86U37 167 aa15.75■□□□□ 0.11
COL9A3-201ENST00000343916 OR5B12Q96R08 314 aa15.75■□□□□ 0.11
COL9A3-201ENST00000343916 PCGF1Q9BSM1 259 aa15.75■□□□□ 0.11
COL9A3-201ENST00000343916 K7ENP7 123 aa15.74■□□□□ 0.11
COL9A3-201ENST00000343916 GZMBP10144 247 aa15.74■□□□□ 0.11
COL9A3-201ENST00000343916 GATA2P23769 480 aaPredicted RBP15.74■□□□□ 0.11
COL9A3-201ENST00000343916 OR1P1Q8NH06 330 aa15.74■□□□□ 0.11
COL9A3-201ENST00000343916 OR5R1Q8NH85 324 aa15.74■□□□□ 0.11
COL9A3-201ENST00000343916 YTHDF2Q9Y5A9 579 aaKnown RBP15.74■□□□□ 0.11
COL9A3-201ENST00000343916 NBASA2RRP1 2371 aa15.74■□□□□ 0.11
COL9A3-201ENST00000343916 TRBV20OR9-2A0A075B6H5 130 aa15.74■□□□□ 0.11
COL9A3-201ENST00000343916 SCO2A0A1W2PP80 73 aa15.74■□□□□ 0.11
COL9A3-201ENST00000343916 E7EUB6 86 aa15.74■□□□□ 0.11
COL9A3-201ENST00000343916 NDUFB3O43676 98 aa15.74■□□□□ 0.11
COL9A3-201ENST00000343916 OR10X1Q8NGY0 326 aa15.74■□□□□ 0.11
COL9A3-201ENST00000343916 BET1LQ9NYM9 111 aa15.74■□□□□ 0.11
COL9A3-201ENST00000343916 XKRY2A2RUG3 117 aa15.73■□□□□ 0.11
COL9A3-201ENST00000343916 PLXNB1O43157 2135 aa15.73■□□□□ 0.11
COL9A3-201ENST00000343916 VENTXO95231 258 aa15.73■□□□□ 0.11
COL9A3-201ENST00000343916 RPL29P47914 159 aaKnown RBP15.73■□□□□ 0.11
COL9A3-201ENST00000343916 JOSD1Q15040 202 aaPredicted RBP15.73■□□□□ 0.11
COL9A3-201ENST00000343916 LRRC10Q5BKY1 277 aa15.73■□□□□ 0.11
COL9A3-201ENST00000343916 APOA2P02652 100 aa15.73■□□□□ 0.11
COL9A3-201ENST00000343916 C1QTNF9P0C862 333 aa15.73■□□□□ 0.11
COL9A3-201ENST00000343916 PRR20EP86478 221 aa15.73■□□□□ 0.11
COL9A3-201ENST00000343916 PRR20CP86479 221 aa15.73■□□□□ 0.11
COL9A3-201ENST00000343916 PRR20DP86480 221 aa15.73■□□□□ 0.11
COL9A3-201ENST00000343916 PRR20BP86481 221 aa15.73■□□□□ 0.11
COL9A3-201ENST00000343916 PRR20AP86496 221 aa15.73■□□□□ 0.11
COL9A3-201ENST00000343916 RAB31Q13636 194 aa15.73■□□□□ 0.11
COL9A3-201ENST00000343916 OR4P4Q8NGL7 312 aa15.73■□□□□ 0.11
COL9A3-201ENST00000343916 PPP5D1E7EU14 171 aa15.72■□□□□ 0.11
COL9A3-201ENST00000343916 TNFRSF13BO14836 293 aaPredicted RBP15.72■□□□□ 0.11
COL9A3-201ENST00000343916 GCHFRP30047 84 aa15.72■□□□□ 0.11
COL9A3-201ENST00000343916 FAM78BQ5VT40 261 aa15.72■□□□□ 0.11
COL9A3-201ENST00000343916 OR5AN1Q8NGI8 311 aa15.72■□□□□ 0.11
COL9A3-201ENST00000343916 ANAPC16Q96DE5 110 aa15.72■□□□□ 0.11
COL9A3-201ENST00000343916 PYGO2Q9BRQ0 406 aa15.72■□□□□ 0.11
COL9A3-201ENST00000343916 NAV3Q8IVL0 2385 aa15.72■□□□□ 0.11
COL9A3-201ENST00000343916 LINC00869P0C866 280 aa15.72■□□□□ 0.11
COL9A3-201ENST00000343916 HNF1AP20823 631 aa15.72■□□□□ 0.11
COL9A3-201ENST00000343916 LOXP28300 417 aaPredicted RBP15.72■□□□□ 0.11
COL9A3-201ENST00000343916 FAM3BP58499 235 aaPredicted RBP15.72■□□□□ 0.11
COL9A3-201ENST00000343916 RHOBP62745 196 aa15.72■□□□□ 0.11
COL9A3-201ENST00000343916 MIR17HGQ75NE6 70 aa15.72■□□□□ 0.11
COL9A3-201ENST00000343916 OSR1Q8TAX0 266 aaPredicted RBP15.72■□□□□ 0.11
COL9A3-201ENST00000343916 ZNF705GA8MUZ8 300 aaPredicted RBP15.71■□□□□ 0.11
COL9A3-201ENST00000343916 PLAUP00749 431 aa15.71■□□□□ 0.11
COL9A3-201ENST00000343916 DLX1P56177 255 aa15.71■□□□□ 0.11
COL9A3-201ENST00000343916 OR5B3Q8NH48 314 aa15.71■□□□□ 0.11
COL9A3-201ENST00000343916 FLYWCH2Q96CP2 140 aaKnown RBP15.71■□□□□ 0.11
COL9A3-201ENST00000343916 IGF2RP11717 2491 aa15.71■□□□□ 0.11
COL9A3-201ENST00000343916 VSTM5A8MXK1 200 aa15.71■□□□□ 0.1
COL9A3-201ENST00000343916 RNASE2P10153 161 aaKnown RBP15.71■□□□□ 0.1
COL9A3-201ENST00000343916 PRB3Q04118 309 aaPredicted RBP15.71■□□□□ 0.1
COL9A3-201ENST00000343916 PRSS8Q16651 343 aa15.71■□□□□ 0.1
COL9A3-201ENST00000343916 C10orf55Q5SWW7 151 aa15.71■□□□□ 0.1
COL9A3-201ENST00000343916 TMEM37Q8WXS4 190 aa15.71■□□□□ 0.1
COL9A3-201ENST00000343916 COMMD5Q9GZQ3 224 aa15.71■□□□□ 0.1
COL9A3-201ENST00000343916 ABCA4P78363 2273 aa15.71■□□□□ 0.1
COL9A3-201ENST00000343916 LRBAP50851 2863 aa15.7■□□□□ 0.1
COL9A3-201ENST00000343916 F6UZH7 168 aa15.7■□□□□ 0.1
COL9A3-201ENST00000343916 SSTP61278 116 aa15.7■□□□□ 0.1
COL9A3-201ENST00000343916 RPL8P62917 257 aaKnown RBP15.7■□□□□ 0.1
COL9A3-201ENST00000343916 TMEM144Q7Z5S9 345 aa15.7■□□□□ 0.1
COL9A3-201ENST00000343916 ZNF664Q8N3J9 261 aa15.7■□□□□ 0.1
COL9A3-201ENST00000343916 OR9G1Q8NH87 305 aa15.7■□□□□ 0.1
COL9A3-201ENST00000343916 FKBP11Q9NYL4 201 aa15.7■□□□□ 0.1
COL9A3-201ENST00000343916 FUT9Q9Y231 359 aa15.7■□□□□ 0.1
COL9A3-201ENST00000343916 SNRPCP09234 159 aaKnown RBP15.7■□□□□ 0.1
COL9A3-201ENST00000343916 C2orf83Q53S99 150 aa15.7■□□□□ 0.1
COL9A3-201ENST00000343916 NABP2Q9BQ15 211 aa15.7■□□□□ 0.1
COL9A3-201ENST00000343916 NGBQ9NPG2 151 aa15.7■□□□□ 0.1
COL9A3-201ENST00000343916 SLC45A2Q9UMX9 530 aa15.7■□□□□ 0.1
COL9A3-201ENST00000343916 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.69■□□□□ 0.1
COL9A3-201ENST00000343916 LYNX1G3V0Z9 82 aa15.69■□□□□ 0.1
COL9A3-201ENST00000343916 LYNX1P0DP58 116 aa15.69■□□□□ 0.1
COL9A3-201ENST00000343916 OR10J1P30954 320 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms