RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 TBR1Q16650 682 aa12.13□□□□□ -0.47
VIPAS39-202ENST00000343765 MIR17HGQ75NE6 70 aa12.13□□□□□ -0.47
VIPAS39-202ENST00000343765 OR51M1Q9H341 326 aa12.13□□□□□ -0.47
VIPAS39-202ENST00000343765 TGOLN2O43493 480 aa12.12□□□□□ -0.47
VIPAS39-202ENST00000343765 PRB3Q04118 309 aaPredicted RBP12.12□□□□□ -0.47
VIPAS39-202ENST00000343765 ZNF833PQ6ZTB9 187 aa12.12□□□□□ -0.47
VIPAS39-202ENST00000343765 OR2T10Q8NGZ9 312 aa12.12□□□□□ -0.47
VIPAS39-202ENST00000343765 CTSZQ9UBR2 303 aa12.12□□□□□ -0.47
VIPAS39-202ENST00000343765 IGKV1OR2-108A0A075B7D4 117 aa12.12□□□□□ -0.47
VIPAS39-202ENST00000343765 F6UZH7 168 aa12.12□□□□□ -0.47
VIPAS39-202ENST00000343765 H0YJW9 148 aa12.12□□□□□ -0.47
VIPAS39-202ENST00000343765 NDUFB3O43676 98 aa12.12□□□□□ -0.47
VIPAS39-202ENST00000343765 DVL1O14640 695 aa12.11□□□□□ -0.47
VIPAS39-202ENST00000343765 RPL29P47914 159 aaKnown RBP12.11□□□□□ -0.47
VIPAS39-202ENST00000343765 DLX1P56177 255 aa12.11□□□□□ -0.47
VIPAS39-202ENST00000343765 MEF2CQ06413 473 aaPredicted RBP12.11□□□□□ -0.47
VIPAS39-202ENST00000343765 TMEM249Q2WGJ8 235 aa12.11□□□□□ -0.47
VIPAS39-202ENST00000343765 C10orf55Q5SWW7 151 aa12.11□□□□□ -0.47
VIPAS39-202ENST00000343765 RNASE6Q93091 150 aaKnown RBP12.11□□□□□ -0.47
VIPAS39-202ENST00000343765 PYGO2Q9BRQ0 406 aa12.11□□□□□ -0.47
VIPAS39-202ENST00000343765 ZNF257Q9Y2Q1 563 aa12.11□□□□□ -0.47
VIPAS39-202ENST00000343765 E7EQL1 145 aa12.11□□□□□ -0.47
VIPAS39-202ENST00000343765 E7EUB6 86 aa12.11□□□□□ -0.47
VIPAS39-202ENST00000343765 TMEM30BQ3MIR4 351 aa12.11□□□□□ -0.47
VIPAS39-202ENST00000343765 LRRC10Q5BKY1 277 aa12.11□□□□□ -0.47
VIPAS39-202ENST00000343765 TMEM37Q8WXS4 190 aa12.11□□□□□ -0.47
VIPAS39-202ENST00000343765 SCNM1Q9BWG6 230 aa12.11□□□□□ -0.47
VIPAS39-202ENST00000343765 COMMD5Q9GZQ3 224 aa12.11□□□□□ -0.47
VIPAS39-202ENST00000343765 JKAMPQ9P055 326 aa12.11□□□□□ -0.47
VIPAS39-202ENST00000343765 FUT9Q9Y231 359 aa12.11□□□□□ -0.47
VIPAS39-202ENST00000343765 ELOA3CA0A087WX78 387 aaPredicted RBP12.1□□□□□ -0.47
VIPAS39-202ENST00000343765 IGHV3-48P01763 117 aa12.1□□□□□ -0.47
VIPAS39-202ENST00000343765 LINC00869P0C866 280 aa12.1□□□□□ -0.47
VIPAS39-202ENST00000343765 OR10J1P30954 320 aa12.1□□□□□ -0.47
VIPAS39-202ENST00000343765 PRR20EP86478 221 aa12.1□□□□□ -0.47
VIPAS39-202ENST00000343765 PRR20CP86479 221 aa12.1□□□□□ -0.47
VIPAS39-202ENST00000343765 PRR20DP86480 221 aa12.1□□□□□ -0.47
VIPAS39-202ENST00000343765 PRR20BP86481 221 aa12.1□□□□□ -0.47
VIPAS39-202ENST00000343765 PRR20AP86496 221 aa12.1□□□□□ -0.47
VIPAS39-202ENST00000343765 GAMTQ14353 236 aa12.1□□□□□ -0.47
VIPAS39-202ENST00000343765 PRSS8Q16651 343 aa12.1□□□□□ -0.47
VIPAS39-202ENST00000343765 OR9G1Q8NH87 305 aa12.1□□□□□ -0.47
VIPAS39-202ENST00000343765 BET1LQ9NYM9 111 aa12.1□□□□□ -0.47
VIPAS39-202ENST00000343765 RALYQ9UKM9 306 aaKnown RBP12.1□□□□□ -0.47
VIPAS39-202ENST00000343765 TRBV23-1A0A0A0MS06 115 aa12.1□□□□□ -0.47
VIPAS39-202ENST00000343765 FLYWCH2Q96CP2 140 aaKnown RBP12.1□□□□□ -0.47
VIPAS39-202ENST00000343765 ACY3Q96HD9 319 aa12.1□□□□□ -0.47
VIPAS39-202ENST00000343765 NABP2Q9BQ15 211 aa12.1□□□□□ -0.47
VIPAS39-202ENST00000343765 IGHV3-72A0A0B4J1Y9 119 aa12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 SHISA9B4DS77 424 aa12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 RNASE2P10153 161 aaKnown RBP12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 PSG5Q15238 335 aa12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 KCNIP4Q6PIL6 250 aa12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 SLC45A2Q9UMX9 530 aa12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 MED13LQ71F56 2210 aa12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 PLXNB1O43157 2135 aa12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 AKAP6Q13023 2319 aa12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 MDFIC2A0A1B0GVS7 189 aa12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 SRP14P37108 136 aaKnown RBP12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 RPL8P62917 257 aaKnown RBP12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 OR5B3Q8NH48 314 aa12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 OR2T6Q8NHC8 308 aa12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 OSR1Q8TAX0 266 aaPredicted RBP12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 SFRP2Q96HF1 295 aa12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 FKBP11Q9NYL4 201 aa12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 PITPNC1Q9UKF7 332 aa12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 ZNF835Q9Y2P0 537 aa12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 SPTBN1Q01082 2364 aaKnown RBP12.09□□□□□ -0.47
VIPAS39-202ENST00000343765 XKRY2A2RUG3 117 aa12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 VSTM5A8MXK1 200 aa12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 LYNX1G3V0Z9 82 aa12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 GGCTO75223 188 aaKnown RBP12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 LYNX1P0DP58 116 aa12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 IL3RAP26951 378 aa12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 CTAG1AP78358 180 aa12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 TMEM144Q7Z5S9 345 aa12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 DMRTC2Q8IXT2 367 aaPredicted RBP12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 OCC1Q8TAD7 63 aa12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 ZNF320A2RRD8 509 aa12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 OR7C2O60412 319 aa12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 NDUFS6O75380 124 aaKnown RBP12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 PLAUP00749 431 aa12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 OR10J4P0C629 311 aa12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 LOXP28300 417 aaPredicted RBP12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 OR5AN1Q8NGI8 311 aa12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 PACRGQ96M98 296 aaPredicted RBP12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 HIST1H2BLQ99880 126 aa12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 NAV3Q8IVL0 2385 aa12.08□□□□□ -0.48
VIPAS39-202ENST00000343765 MT-CO2P00403 227 aa12.07□□□□□ -0.48
VIPAS39-202ENST00000343765 C2orf83Q53S99 150 aa12.07□□□□□ -0.48
VIPAS39-202ENST00000343765 SGMS2Q8NHU3 365 aa12.07□□□□□ -0.48
VIPAS39-202ENST00000343765 TPSG1Q9NRR2 321 aa12.07□□□□□ -0.48
VIPAS39-202ENST00000343765 TRAV20A0A0B4J274 112 aa12.07□□□□□ -0.48
VIPAS39-202ENST00000343765 ENSAO43768 121 aaKnown RBP12.07□□□□□ -0.48
VIPAS39-202ENST00000343765 REG1AP05451 166 aa12.07□□□□□ -0.48
VIPAS39-202ENST00000343765 OR1L8Q8NGR8 309 aa12.07□□□□□ -0.48
VIPAS39-202ENST00000343765 LINC01560Q8TB33 94 aa12.07□□□□□ -0.48
VIPAS39-202ENST00000343765 NDUFA4L2Q9NRX3 87 aa12.07□□□□□ -0.48
VIPAS39-202ENST00000343765 SSBP2P81877 361 aaPredicted RBP12.07□□□□□ -0.48
VIPAS39-202ENST00000343765 OR4C13Q8NGP0 309 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms