RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CBY1Q9Y3M2 126 aa6.88□□□□□ -1.31
HMGB1-203ENST00000341423 IGKV1OR2-108A0A075B7D4 117 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 RNASE4P34096 147 aaKnown RBP6.87□□□□□ -1.31
HMGB1-203ENST00000341423 CDC34P49427 236 aaPredicted RBP6.87□□□□□ -1.31
HMGB1-203ENST00000341423 OR2D3Q8NGH3 330 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 NOL4LQ96MY1 436 aaPredicted RBP6.87□□□□□ -1.31
HMGB1-203ENST00000341423 SPAG8Q99932 426 aaPredicted RBP6.87□□□□□ -1.31
HMGB1-203ENST00000341423 CTDSP1Q9GZU7 261 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 PARP14Q460N5 1801 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 ATP6V1G2O95670 118 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 HRH1P35367 487 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 DEFB135Q30KP9 77 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 SIGLEC15Q6ZMC9 328 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 TMEM37Q8WXS4 190 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 PTX4Q96A99 478 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 KIR2DL4Q99706 377 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 MALRD1Q5VYJ5 2156 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 LAMB1P07942 1786 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 FOXI3A8MTJ6 420 aaPredicted RBP6.87□□□□□ -1.31
HMGB1-203ENST00000341423 LYPD2Q6UXB3 125 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 C11orf42Q8N5U0 333 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 OR11H4Q8NGC9 324 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 ZNF747Q9BV97 191 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 TMSB15BA0A087X1C1 80 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 A0A1B0GTI1 187 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 TMEM127O75204 238 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 GHRHP01286 108 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 PPYP01298 95 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 FA2HQ7L5A8 372 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 SHROOM3Q8TF72 1996 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 MED13Q9UHV7 2174 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 PI3P19957 117 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 PPIFP30405 207 aaKnown RBP6.87□□□□□ -1.31
HMGB1-203ENST00000341423 FAM162BQ5T6X4 162 aa6.87□□□□□ -1.31
HMGB1-203ENST00000341423 BRCA1P38398 1863 aaKnown RBP6.86□□□□□ -1.31
HMGB1-203ENST00000341423 NDUFA4O00483 81 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 EIF3GO75821 320 aaKnown RBP eCLIP6.86□□□□□ -1.31
HMGB1-203ENST00000341423 RAB6AP20340 208 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 RPL13AP40429 203 aaKnown RBP6.86□□□□□ -1.31
HMGB1-203ENST00000341423 MEIG1Q5JSS6 88 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 C1orf229Q6ZS94 237 aaPredicted RBP6.86□□□□□ -1.31
HMGB1-203ENST00000341423 OR2G3Q8NGZ4 309 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 LINC01548A6NM66 108 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 H3F3AP84243 136 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 LSAMPQ13449 338 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 TBC1D26Q86UD7 250 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 TVP23CQ96ET8 276 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 THAP7Q9BT49 309 aaPredicted RBP6.86□□□□□ -1.31
HMGB1-203ENST00000341423 CLEC2DQ9UHP7 191 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 ARL2-SNX15V9GYD0 113 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 DLEC1Q9Y238 1755 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 KHDC3LQ587J8 217 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 WIPF2Q8TF74 440 aaPredicted RBP6.86□□□□□ -1.31
HMGB1-203ENST00000341423 SLC35B3Q9H1N7 401 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 ZNF230Q9UIE0 474 aaPredicted RBP6.86□□□□□ -1.31
HMGB1-203ENST00000341423 LHFPL6Q9Y693 200 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 TP53BP1Q12888 1972 aaPredicted RBP6.86□□□□□ -1.31
HMGB1-203ENST00000341423 MGAMO43451 1857 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 PIEZO2Q9H5I5 2752 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 M0R2N4 97 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 MRPL23Q16540 153 aaKnown RBP6.86□□□□□ -1.31
HMGB1-203ENST00000341423 OR10AC1Q8NH08 325 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 SAMD10Q9BYL1 202 aa6.86□□□□□ -1.31
HMGB1-203ENST00000341423 MRPS16Q9Y3D3 137 aaKnown RBP6.86□□□□□ -1.31
HMGB1-203ENST00000341423 TRAV10A0A0B4J240 114 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 PRR32B1ATL7 298 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 ZNF324O75467 553 aaPredicted RBP6.85□□□□□ -1.31
HMGB1-203ENST00000341423 AQP10Q96PS8 301 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 F8WEM9 126 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 GZMBP10144 247 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 P2RY1P47900 373 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 PRSS8Q16651 343 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 SFT2D1Q8WV19 159 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 ISOC2Q96AB3 205 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 MRGPRFQ96AM1 343 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 TMEM160Q9NX00 188 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 RFNGQ9Y644 331 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 ICOSQ9Y6W8 199 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 MED12Q93074 2177 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 MAST4O15021 2626 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 RANP62826 216 aaKnown RBP6.85□□□□□ -1.31
HMGB1-203ENST00000341423 FOXB2Q5VYV0 432 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 FDX2Q6P4F2 183 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 IFITM5A6NNB3 132 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 RPS27AP62979 156 aaKnown RBP6.85□□□□□ -1.31
HMGB1-203ENST00000341423 ZNF146Q15072 292 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 SMUG1Q53HV7 270 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 KCNRGQ8N5I3 272 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 NPIPB3Q92617 1050 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 NPVFQ9HCQ7 196 aa6.85□□□□□ -1.31
HMGB1-203ENST00000341423 RBMY1BA6NDE4 496 aaKnown RBP6.84□□□□□ -1.31
HMGB1-203ENST00000341423 RBMY1EA6NEQ0 496 aaKnown RBP6.84□□□□□ -1.31
HMGB1-203ENST00000341423 ALPLP05186 524 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 RBMY1DP0C7P1 496 aaKnown RBP6.84□□□□□ -1.31
HMGB1-203ENST00000341423 UCP3P55916 312 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 KIAA0141Q14154 515 aaPredicted RBP6.84□□□□□ -1.31
HMGB1-203ENST00000341423 GUK1Q16774 197 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 DEFB136Q30KP8 78 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 RPL39P5Q59GN2 51 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 OXLD1Q5BKU9 147 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms