RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 LINC00305Q7Z4B0 112 aa16.18■□□□□ 0.18
USP48-201ENST00000308271 CCL8P80075 99 aa16.18■□□□□ 0.18
USP48-201ENST00000308271 TRBV6-6A0A0A6YYG2 114 aa16.18■□□□□ 0.18
USP48-201ENST00000308271 FAM90A9PA6NNJ1 464 aa16.18■□□□□ 0.18
USP48-201ENST00000308271 TDGF1P3P51864 188 aa16.18■□□□□ 0.18
USP48-201ENST00000308271 C17orf82Q86X59 251 aaPredicted RBP16.18■□□□□ 0.18
USP48-201ENST00000308271 OSR1Q8TAX0 266 aaPredicted RBP16.18■□□□□ 0.18
USP48-201ENST00000308271 DIRC2Q96SL1 478 aa16.18■□□□□ 0.18
USP48-201ENST00000308271 TMEM208Q9BTX3 173 aa16.18■□□□□ 0.18
USP48-201ENST00000308271 ZNF581Q9P0T4 197 aa16.18■□□□□ 0.18
USP48-201ENST00000308271 ZNRF1Q8ND25 227 aa16.18■□□□□ 0.18
USP48-201ENST00000308271 ST6GALNAC3Q8NDV1 305 aa16.17■□□□□ 0.18
USP48-201ENST00000308271 FNDC1Q4ZHG4 1894 aaPredicted RBP16.17■□□□□ 0.18
USP48-201ENST00000308271 HIGD1CA8MV81 97 aa16.17■□□□□ 0.18
USP48-201ENST00000308271 IQCF6A8MYZ5 107 aa16.17■□□□□ 0.18
USP48-201ENST00000308271 FAM157AC9JC47 383 aa16.17■□□□□ 0.18
USP48-201ENST00000308271 C9JCJ5 164 aa16.17■□□□□ 0.18
USP48-201ENST00000308271 ESPL1Q14674 2120 aa16.17■□□□□ 0.18
USP48-201ENST00000308271 RAB1CQ92928 201 aa16.17■□□□□ 0.18
USP48-201ENST00000308271 RPP21Q9H633 154 aaKnown RBP16.17■□□□□ 0.18
USP48-201ENST00000308271 DEPPQ9NTK1 212 aa16.17■□□□□ 0.18
USP48-201ENST00000308271 PLXNA2O75051 1894 aa16.17■□□□□ 0.18
USP48-201ENST00000308271 RPS20P60866 119 aaKnown RBP16.17■□□□□ 0.18
USP48-201ENST00000308271 CFHR1Q03591 330 aa16.17■□□□□ 0.18
USP48-201ENST00000308271 Q6ZT83 130 aa16.17■□□□□ 0.18
USP48-201ENST00000308271 MUC15Q8N387 334 aa16.17■□□□□ 0.18
USP48-201ENST00000308271 PNKDQ8N490 385 aa16.17■□□□□ 0.18
USP48-201ENST00000308271 MAP1LC3AQ9H492 121 aa16.16■□□□□ 0.18
USP48-201ENST00000308271 WIPF3A6NGB9 483 aa16.16■□□□□ 0.18
USP48-201ENST00000308271 CELA3AP09093 270 aa16.16■□□□□ 0.18
USP48-201ENST00000308271 TREML4Q6UXN2 200 aa16.16■□□□□ 0.18
USP48-201ENST00000308271 FOXL2NBQ6ZUU3 175 aa16.16■□□□□ 0.18
USP48-201ENST00000308271 TCF24Q7RTU0 167 aa16.16■□□□□ 0.18
USP48-201ENST00000308271 UMODP07911 640 aa16.16■□□□□ 0.18
USP48-201ENST00000308271 GOLT1AQ6ZVE7 132 aa16.16■□□□□ 0.18
USP48-201ENST00000308271 FANCMQ8IYD8 2048 aa16.16■□□□□ 0.18
USP48-201ENST00000308271 AHRRA9YTQ3 701 aa16.16■□□□□ 0.18
USP48-201ENST00000308271 GPR82Q96P67 336 aa16.16■□□□□ 0.18
USP48-201ENST00000308271 DCTN5Q9BTE1 182 aa16.16■□□□□ 0.18
USP48-201ENST00000308271 GGTLC1Q9BX51 225 aa16.16■□□□□ 0.18
USP48-201ENST00000308271 PILRBQ9UKJ0 227 aa16.16■□□□□ 0.18
USP48-201ENST00000308271 RPL7P18124 248 aaKnown RBP16.15■□□□□ 0.18
USP48-201ENST00000308271 GPR6P46095 362 aaPredicted RBP16.15■□□□□ 0.18
USP48-201ENST00000308271 ARL6IP6Q8N6S5 226 aa16.15■□□□□ 0.18
USP48-201ENST00000308271 OR52E5Q8NH55 327 aa16.15■□□□□ 0.18
USP48-201ENST00000308271 TMEM186Q96B77 213 aa16.15■□□□□ 0.18
USP48-201ENST00000308271 A0A0G2JRQ6 117 aa16.15■□□□□ 0.18
USP48-201ENST00000308271 YPEL1O60688 119 aa16.15■□□□□ 0.18
USP48-201ENST00000308271 YPEL2Q96QA6 119 aa16.15■□□□□ 0.18
USP48-201ENST00000308271 DERL1Q9BUN8 251 aa16.15■□□□□ 0.18
USP48-201ENST00000308271 C15orf61A6NNL5 157 aa16.15■□□□□ 0.18
USP48-201ENST00000308271 LGALS7P47929 136 aa16.15■□□□□ 0.18
USP48-201ENST00000308271 A0A1B0GUT8 65 aa16.14■□□□□ 0.18
USP48-201ENST00000308271 TMEM238LA0A1B0GVL6 79 aa16.14■□□□□ 0.18
USP48-201ENST00000308271 A6NJY4 79 aa16.14■□□□□ 0.18
USP48-201ENST00000308271 F5H697 171 aa16.14■□□□□ 0.18
USP48-201ENST00000308271 LY96Q9Y6Y9 160 aa16.14■□□□□ 0.18
USP48-201ENST00000308271 H3BTX0 84 aa16.14■□□□□ 0.17
USP48-201ENST00000308271 TMEM136Q6ZRR5 245 aa16.14■□□□□ 0.17
USP48-201ENST00000308271 IGHV3-72A0A0B4J1Y9 119 aa16.14■□□□□ 0.17
USP48-201ENST00000308271 TRGV8A0A0C4DH27 118 aa16.14■□□□□ 0.17
USP48-201ENST00000308271 GOSR1O95249 250 aa16.14■□□□□ 0.17
USP48-201ENST00000308271 IGHV3-48P01763 117 aa16.14■□□□□ 0.17
USP48-201ENST00000308271 GATA2P23769 480 aaPredicted RBP16.14■□□□□ 0.17
USP48-201ENST00000308271 RBPMS2Q6ZRY4 209 aaKnown RBP16.14■□□□□ 0.17
USP48-201ENST00000308271 ZNF414Q96IQ9 312 aa16.14■□□□□ 0.17
USP48-201ENST00000308271 DUTP33316 252 aaKnown RBP16.14■□□□□ 0.17
USP48-201ENST00000308271 PSMB2P49721 201 aa16.14■□□□□ 0.17
USP48-201ENST00000308271 Q6ZRM9 215 aa16.14■□□□□ 0.17
USP48-201ENST00000308271 C1RLQ9NZP8 487 aa16.14■□□□□ 0.17
USP48-201ENST00000308271 SEMA5BQ9P283 1151 aa16.14■□□□□ 0.17
USP48-201ENST00000308271 OR9G9P0C7N8 305 aa16.13■□□□□ 0.17
USP48-201ENST00000308271 C20orf144Q9BQM9 153 aa16.13■□□□□ 0.17
USP48-201ENST00000308271 SNHG12Q9BXW3 62 aa16.13■□□□□ 0.17
USP48-201ENST00000308271 CACNA1HO95180 2353 aa16.13■□□□□ 0.17
USP48-201ENST00000308271 ERASQ7Z444 233 aa16.13■□□□□ 0.17
USP48-201ENST00000308271 RNF166Q96A37 237 aaPredicted RBP16.13■□□□□ 0.17
USP48-201ENST00000308271 PPIHO43447 177 aaKnown RBP16.13■□□□□ 0.17
USP48-201ENST00000308271 APOHP02749 345 aaPredicted RBP16.13■□□□□ 0.17
USP48-201ENST00000308271 PSMG4Q5JS54 123 aa16.13■□□□□ 0.17
USP48-201ENST00000308271 SPANXN1Q5VSR9 72 aa16.13■□□□□ 0.17
USP48-201ENST00000308271 FAM90A1Q86YD7 464 aa16.13■□□□□ 0.17
USP48-201ENST00000308271 SMIM13P0DJ93 91 aa16.12■□□□□ 0.17
USP48-201ENST00000308271 E9PLN8 166 aa16.12■□□□□ 0.17
USP48-201ENST00000308271 TMEM50AO95807 157 aa16.12■□□□□ 0.17
USP48-201ENST00000308271 LPAR2Q9HBW0 351 aa16.12■□□□□ 0.17
USP48-201ENST00000308271 MOSP00540 346 aa16.12■□□□□ 0.17
USP48-201ENST00000308271 C5orf24Q7Z6I8 188 aa16.12■□□□□ 0.17
USP48-201ENST00000308271 FMC1Q96HJ9 113 aa16.12■□□□□ 0.17
USP48-201ENST00000308271 ST20Q9HBF5 79 aa16.12■□□□□ 0.17
USP48-201ENST00000308271 F11RQ9Y624 299 aaKnown RBP16.12■□□□□ 0.17
USP48-201ENST00000308271 ICE1Q9Y2F5 2266 aa16.12■□□□□ 0.17
USP48-201ENST00000308271 ANAPC1Q9H1A4 1944 aa16.12■□□□□ 0.17
USP48-201ENST00000308271 TANC1Q9C0D5 1861 aa16.12■□□□□ 0.17
USP48-201ENST00000308271 ACACAQ13085 2346 aa16.12■□□□□ 0.17
USP48-201ENST00000308271 KBTBD11-OT1A0A1B0GTJ5 212 aa16.12■□□□□ 0.17
USP48-201ENST00000308271 GPR183P32249 361 aa16.12■□□□□ 0.17
USP48-201ENST00000308271 IGKV3D-15A0A087WSY6 115 aa16.11■□□□□ 0.17
USP48-201ENST00000308271 A0A1B0GW15 77 aa16.11■□□□□ 0.17
USP48-201ENST00000308271 C16orf97H3BN30 126 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms