RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ATP6V0BQ99437 205 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 DEFB127Q9H1M4 99 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 YAE1D1Q9NRH1 226 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 LSM4Q9Y4Z0 139 aaKnown RBP5.45□□□□□ -1.54
VPS35-201ENST00000299138 IGHV3-20A0A0C4DH32 117 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 A0A1W2PQF6 199 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 SEC11AP67812 179 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 PRSS41Q7RTY9 318 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 TAF15Q92804 592 aaKnown RBP eCLIP5.45□□□□□ -1.54
VPS35-201ENST00000299138 LOXL4Q96JB6 756 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 YPEL4Q96NS1 127 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 KIR2DL4Q99706 377 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 MUC21A0A0G2JKD1 596 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 MUC21A0A140T8X8 626 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 C9JCJ5 164 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 HBDP02042 147 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 B4GALT1P15291 398 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 TDGF1P3P51864 188 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 MUC21Q5SSG8 566 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 GFI1BQ5VTD9 330 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 MRGPRFQ96AM1 343 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 LAMTOR3Q9UHA4 124 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 HIGD1AQ9Y241 93 aa5.45□□□□□ -1.54
VPS35-201ENST00000299138 NAPSAO96009 420 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 CLPSP04118 112 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 PFN1P07737 140 aaKnown RBP5.44□□□□□ -1.54
VPS35-201ENST00000299138 YPEL3P61236 119 aaPredicted RBP5.44□□□□□ -1.54
VPS35-201ENST00000299138 TMEM78Q5T7P6 136 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 UNQ5815/PRO19632Q6UWF5 114 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 CST9LQ9H4G1 147 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 FAM60AQ9NP50 221 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 COL10A1Q03692 680 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 C2orf82Q6UX34 121 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 MDP1Q86V88 176 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 WDYHV1Q96HA8 205 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 C16orf92Q96LL3 132 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 VKORC1Q9BQB6 163 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 LRRC61Q9BV99 259 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 TMEM126AQ9H061 195 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 PGPA6NDG6 321 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 TNFSF13O75888 250 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 OR2H2O95918 312 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 UMODP07911 640 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 P2RY6Q15077 328 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 METTL26Q96S19 204 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 KLF12Q9Y4X4 402 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 PXMP4Q9Y6I8 212 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 IGHV3-64A0A075B6Q5 118 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 A0A0G2JLM5 398 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 KIR2DL5BA0A0G2JN68 375 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 KIR2DL5BA0A0G2JPC4 375 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.44□□□□□ -1.54
VPS35-201ENST00000299138 SS18L1O75177 396 aaPredicted RBP5.44□□□□□ -1.54
VPS35-201ENST00000299138 SCRG1O75711 98 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 IFITM1P13164 125 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 CRYGSP22914 178 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 ADMP35318 185 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 KIR2DL5AQ8N109 375 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 GAPTQ8N292 157 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 FOXB1Q99853 325 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 DIDO1Q9BTC0 2240 aaKnown RBP5.44□□□□□ -1.54
VPS35-201ENST00000299138 B5MCH6 92 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 SRSF3P84103 164 aaKnown RBP5.44□□□□□ -1.54
VPS35-201ENST00000299138 IL11RAQ14626 422 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 ADAMTSL5Q6ZMM2 481 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 BAALCQ8WXS3 180 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 JMJD8Q96S16 334 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 PLA2G2FQ9BZM2 168 aa5.44□□□□□ -1.54
VPS35-201ENST00000299138 KIAA0100Q14667 2235 aaKnown RBP5.44□□□□□ -1.54
VPS35-201ENST00000299138 IGHV1OR21-1A0A087WYE8 117 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 A0A0G2JMM0 328 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 A0A1W2PPB8 328 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 ODAMA1E959 279 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 GAGE12BA1L429 117 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 KIR3DP1A8MWS1 328 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 ID1P41134 155 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 MRPL55Q7Z7F7 128 aaKnown RBP5.43□□□□□ -1.54
VPS35-201ENST00000299138 BRK1Q8WUW1 75 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 SCRT1Q9BWW7 348 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 LPAR2Q9HBW0 351 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 TOMM40O96008 361 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 PSG2P11465 335 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 SRFP11831 508 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 Q0VG73 95 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 FAM90A2PQ658T7 463 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 ZNF525Q8N782 197 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 CCDC88CQ9P219 2028 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 ACTL10Q5JWF8 245 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 MMD2Q8IY49 270 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 ABHD17AQ96GS6 310 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 M0R2P5 195 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 C1QTNF9P0C862 333 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 TDGF1P13385 188 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 EVI2AP22794 236 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 TSPAN7P41732 249 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 CEACAM21Q3KPI0 293 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 ERG28Q9UKR5 140 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 COL4A3Q01955 1670 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 CACNA1IQ9P0X4 2223 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 CEP350Q5VT06 3117 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms