RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 VAMP1P23763 118 aa13.83□□□□□ -0.2
CLN3-247ENST00000636351 CDX1P47902 265 aaPredicted RBP13.83□□□□□ -0.2
CLN3-247ENST00000636351 DEFA5Q01523 94 aa13.83□□□□□ -0.2
CLN3-247ENST00000636351 TMEM268Q5VZI3 342 aa13.83□□□□□ -0.2
CLN3-247ENST00000636351 GLYATL2Q8WU03 294 aa13.83□□□□□ -0.2
CLN3-247ENST00000636351 C4orf3Q8WVX3 66 aa13.83□□□□□ -0.2
CLN3-247ENST00000636351 RBPMSQ93062 196 aaKnown RBP13.83□□□□□ -0.2
CLN3-247ENST00000636351 GNB4Q9HAV0 340 aa13.83□□□□□ -0.2
CLN3-247ENST00000636351 FKBP11Q9NYL4 201 aa13.83□□□□□ -0.2
CLN3-247ENST00000636351 PRR13Q9NZ81 148 aa13.83□□□□□ -0.2
CLN3-247ENST00000636351 A0A1B0GW64 132 aa13.82□□□□□ -0.2
CLN3-247ENST00000636351 NDUFB6O95139 128 aa13.82□□□□□ -0.2
CLN3-247ENST00000636351 DUS4LO95620 317 aaKnown RBP13.82□□□□□ -0.2
CLN3-247ENST00000636351 REG1AP05451 166 aa13.82□□□□□ -0.2
CLN3-247ENST00000636351 TRAPPC2P0DI81 140 aa13.82□□□□□ -0.2
CLN3-247ENST00000636351 TRAPPC2BP0DI82 140 aa13.82□□□□□ -0.2
CLN3-247ENST00000636351 AREGP15514 252 aa13.82□□□□□ -0.2
CLN3-247ENST00000636351 SLC6A1P30531 599 aa13.82□□□□□ -0.2
CLN3-247ENST00000636351 HOXD3P31249 432 aaPredicted RBP13.82□□□□□ -0.2
CLN3-247ENST00000636351 BTCP35070 178 aa13.82□□□□□ -0.2
CLN3-247ENST00000636351 MECP2P51608 486 aaKnown RBP13.82□□□□□ -0.2
CLN3-247ENST00000636351 IZUMO4Q1ZYL8 232 aa13.82□□□□□ -0.2
CLN3-247ENST00000636351 DEFB136Q30KP8 78 aa13.82□□□□□ -0.2
CLN3-247ENST00000636351 CADM3Q8N126 398 aa13.82□□□□□ -0.2
CLN3-247ENST00000636351 ZNF491Q8N8L2 437 aa13.82□□□□□ -0.2
CLN3-247ENST00000636351 MYOZ3Q8TDC0 251 aa13.82□□□□□ -0.2
CLN3-247ENST00000636351 GALNT14Q96FL9 552 aa13.82□□□□□ -0.2
CLN3-247ENST00000636351 UBE2E2Q96LR5 201 aa13.82□□□□□ -0.2
CLN3-247ENST00000636351 DNAH9Q9NYC9 4486 aa13.81□□□□□ -0.2
CLN3-247ENST00000636351 TEX50A0A1B0GTY4 177 aa13.81□□□□□ -0.2
CLN3-247ENST00000636351 C13orf42A0A1B0GVH6 325 aa13.81□□□□□ -0.2
CLN3-247ENST00000636351 PLA2G10O15496 165 aa13.81□□□□□ -0.2
CLN3-247ENST00000636351 CDS2O95674 445 aa13.81□□□□□ -0.2
CLN3-247ENST00000636351 IGHV3-11P01762 117 aa13.81□□□□□ -0.2
CLN3-247ENST00000636351 PRH1P02810 166 aa13.81□□□□□ -0.2
CLN3-247ENST00000636351 RAB25P57735 213 aa13.81□□□□□ -0.2
CLN3-247ENST00000636351 SRPXP78539 464 aa13.81□□□□□ -0.2
CLN3-247ENST00000636351 TMEM187Q14656 261 aa13.81□□□□□ -0.2
CLN3-247ENST00000636351 TMEM128Q5BJH2 165 aa13.81□□□□□ -0.2
CLN3-247ENST00000636351 THOC7Q6I9Y2 204 aaKnown RBP13.81□□□□□ -0.2
CLN3-247ENST00000636351 SELENOHQ8IZQ5 122 aaKnown RBP13.81□□□□□ -0.2
CLN3-247ENST00000636351 TTC9CQ8N5M4 171 aa13.81□□□□□ -0.2
CLN3-247ENST00000636351 OR5B3Q8NH48 314 aa13.81□□□□□ -0.2
CLN3-247ENST00000636351 LHFPL5Q8TAF8 219 aa13.81□□□□□ -0.2
CLN3-247ENST00000636351 DUX3Q96PT4 197 aa13.81□□□□□ -0.2
CLN3-247ENST00000636351 TMEM14BQ9NUH8 114 aa13.81□□□□□ -0.2
CLN3-247ENST00000636351 ZNF257Q9Y2Q1 563 aa13.81□□□□□ -0.2
CLN3-247ENST00000636351 COL7A1Q02388 2944 aa13.81□□□□□ -0.2
CLN3-247ENST00000636351 CGB1A6NKQ9 187 aa13.8□□□□□ -0.2
CLN3-247ENST00000636351 DBX1A6NMT0 343 aa13.8□□□□□ -0.2
CLN3-247ENST00000636351 NPIPB5A8MRT5 1133 aa13.8□□□□□ -0.2
CLN3-247ENST00000636351 DHFRP00374 187 aa13.8□□□□□ -0.2
CLN3-247ENST00000636351 DEFA4P12838 97 aa13.8□□□□□ -0.2
CLN3-247ENST00000636351 PSMB6P28072 239 aa13.8□□□□□ -0.2
CLN3-247ENST00000636351 SUPT4H1P63272 117 aaKnown RBP13.8□□□□□ -0.2
CLN3-247ENST00000636351 C19orf35Q6ZS72 473 aa13.8□□□□□ -0.2
CLN3-247ENST00000636351 LINC00482Q8N8I6 264 aa13.8□□□□□ -0.2
CLN3-247ENST00000636351 SRSF8Q9BRL6 282 aaKnown RBP13.8□□□□□ -0.2
CLN3-247ENST00000636351 PDCD10Q9BUL8 212 aa13.8□□□□□ -0.2
CLN3-247ENST00000636351 FLVCR2Q9UPI3 526 aa13.8□□□□□ -0.2
CLN3-247ENST00000636351 TENM3Q9P273 2699 aa13.79□□□□□ -0.2
CLN3-247ENST00000636351 A0A0G2JLM5 398 aa13.79□□□□□ -0.2
CLN3-247ENST00000636351 IGLC7A0M8Q6 106 aa13.79□□□□□ -0.2
CLN3-247ENST00000636351 CCL24O00175 119 aa13.79□□□□□ -0.2
CLN3-247ENST00000636351 UPK1BO75841 260 aa13.79□□□□□ -0.2
CLN3-247ENST00000636351 RHOGP84095 191 aa13.79□□□□□ -0.2
CLN3-247ENST00000636351 CD69Q07108 199 aa13.79□□□□□ -0.2
CLN3-247ENST00000636351 EGFEM1PQ0D2K5 195 aa13.79□□□□□ -0.2
CLN3-247ENST00000636351 PPP1R1AQ13522 171 aa13.79□□□□□ -0.2
CLN3-247ENST00000636351 KIAA0141Q14154 515 aaPredicted RBP13.79□□□□□ -0.2
CLN3-247ENST00000636351 MZT2BQ6NZ67 158 aa13.79□□□□□ -0.2
CLN3-247ENST00000636351 ETV3LQ6ZN32 361 aa13.79□□□□□ -0.2
CLN3-247ENST00000636351 FAM219AQ8IW50 185 aa13.79□□□□□ -0.2
CLN3-247ENST00000636351 LGI3Q8N145 548 aa13.79□□□□□ -0.2
CLN3-247ENST00000636351 SLC35G3Q8N808 338 aa13.79□□□□□ -0.2
CLN3-247ENST00000636351 OR10W1Q8NGF6 305 aa13.79□□□□□ -0.2
CLN3-247ENST00000636351 IL22RA2Q969J5 263 aa13.79□□□□□ -0.2
CLN3-247ENST00000636351 LSM10Q969L4 123 aaKnown RBP13.79□□□□□ -0.2
CLN3-247ENST00000636351 RAX2Q96IS3 184 aa13.79□□□□□ -0.2
CLN3-247ENST00000636351 TMEM56Q96MV1 263 aa13.79□□□□□ -0.2
CLN3-247ENST00000636351 ALX4Q9H161 411 aaPredicted RBP13.79□□□□□ -0.2
CLN3-247ENST00000636351 TMEM56-RWDD3S4R434 201 aa13.79□□□□□ -0.2
CLN3-247ENST00000636351 A0A0G2JRQ6 117 aa13.78□□□□□ -0.2
CLN3-247ENST00000636351 OR2J3O76001 311 aa13.78□□□□□ -0.2
CLN3-247ENST00000636351 IFNA17P01571 189 aa13.78□□□□□ -0.2
CLN3-247ENST00000636351 LGALS1P09382 135 aaKnown RBP13.78□□□□□ -0.2
CLN3-247ENST00000636351 P0C879 139 aa13.78□□□□□ -0.2
CLN3-247ENST00000636351 OR13C7P0DN81 318 aa13.78□□□□□ -0.2
CLN3-247ENST00000636351 MYCNOSP40205 109 aa13.78□□□□□ -0.2
CLN3-247ENST00000636351 HSD17B13Q7Z5P4 300 aaPredicted RBP13.78□□□□□ -0.2
CLN3-247ENST00000636351 MRPL41Q8IXM3 137 aaKnown RBP13.78□□□□□ -0.2
CLN3-247ENST00000636351 C20orf85Q9H1P6 137 aa13.78□□□□□ -0.2
CLN3-247ENST00000636351 PLEKHA3Q9HB20 300 aa13.78□□□□□ -0.2
CLN3-247ENST00000636351 NDUFA4L2Q9NRX3 87 aa13.78□□□□□ -0.2
CLN3-247ENST00000636351 CACNG5Q9UF02 275 aa13.78□□□□□ -0.2
CLN3-247ENST00000636351 TBC1D24Q9ULP9 559 aa13.78□□□□□ -0.2
CLN3-247ENST00000636351 A0A0B4J293 547 aa13.77□□□□□ -0.21
CLN3-247ENST00000636351 PIGBOS1A0A0B4J2F0 54 aa13.77□□□□□ -0.21
CLN3-247ENST00000636351 FAM223BA6NKX1 122 aa13.77□□□□□ -0.21
CLN3-247ENST00000636351 SFT2D2O95562 160 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms