RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 IGKV1D-39P04432 117 aa12.24□□□□□ -0.45
BRCA1-228ENST00000618469 SERPINE2P07093 398 aa12.24□□□□□ -0.45
BRCA1-228ENST00000618469 AKAIN1P0CW23 69 aa12.24□□□□□ -0.45
BRCA1-228ENST00000618469 THOC7Q6I9Y2 204 aaKnown RBP12.24□□□□□ -0.45
BRCA1-228ENST00000618469 HAPLN4Q86UW8 402 aa12.24□□□□□ -0.45
BRCA1-228ENST00000618469 CCDC71LQ8N9Z2 235 aa12.24□□□□□ -0.45
BRCA1-228ENST00000618469 OR10W1Q8NGF6 305 aa12.24□□□□□ -0.45
BRCA1-228ENST00000618469 OR1L8Q8NGR8 309 aa12.24□□□□□ -0.45
BRCA1-228ENST00000618469 TERB2Q8NHR7 220 aa12.24□□□□□ -0.45
BRCA1-228ENST00000618469 MARCH1Q8TCQ1 289 aa12.24□□□□□ -0.45
BRCA1-228ENST00000618469 OR4C12Q96R67 309 aa12.24□□□□□ -0.45
BRCA1-228ENST00000618469 TSC22D3Q99576 134 aa12.24□□□□□ -0.45
BRCA1-228ENST00000618469 B9D2Q9BPU9 175 aa12.24□□□□□ -0.45
BRCA1-228ENST00000618469 ELOVL1Q9BW60 279 aa12.24□□□□□ -0.45
BRCA1-228ENST00000618469 COPZ2Q9P299 210 aa12.24□□□□□ -0.45
BRCA1-228ENST00000618469 PRNDQ9UKY0 176 aa12.24□□□□□ -0.45
BRCA1-228ENST00000618469 OR51B2Q9Y5P1 312 aa12.24□□□□□ -0.45
BRCA1-228ENST00000618469 S4R3C0 116 aa12.24□□□□□ -0.45
BRCA1-228ENST00000618469 IGLV11-55A0A075B6I3 123 aa12.23□□□□□ -0.45
BRCA1-228ENST00000618469 FABP12A6NFH5 140 aa12.23□□□□□ -0.45
BRCA1-228ENST00000618469 C15orf61A6NNL5 157 aa12.23□□□□□ -0.45
BRCA1-228ENST00000618469 BMPR1BO00238 502 aa12.23□□□□□ -0.45
BRCA1-228ENST00000618469 GSTZ1O43708 216 aaPredicted RBP12.23□□□□□ -0.45
BRCA1-228ENST00000618469 NDUFB8O95169 186 aa12.23□□□□□ -0.45
BRCA1-228ENST00000618469 TRAPPC2P0DI81 140 aa12.23□□□□□ -0.45
BRCA1-228ENST00000618469 TRAPPC2BP0DI82 140 aa12.23□□□□□ -0.45
BRCA1-228ENST00000618469 HIST1H1BP16401 226 aaKnown RBP12.23□□□□□ -0.45
BRCA1-228ENST00000618469 PTBP1P26599 531 aaKnown RBP eCLIP12.23□□□□□ -0.45
BRCA1-228ENST00000618469 DCTN2Q13561 401 aaKnown RBP12.23□□□□□ -0.45
BRCA1-228ENST00000618469 KLF5Q13887 457 aaPredicted RBP12.23□□□□□ -0.45
BRCA1-228ENST00000618469 H2BFWTQ7Z2G1 175 aa12.23□□□□□ -0.45
BRCA1-228ENST00000618469 OR9G4Q8NGQ1 327 aa12.23□□□□□ -0.45
BRCA1-228ENST00000618469 OR6Q1Q8NGQ2 317 aa12.23□□□□□ -0.45
BRCA1-228ENST00000618469 ZFAND1Q8TCF1 268 aa12.23□□□□□ -0.45
BRCA1-228ENST00000618469 LSM10Q969L4 123 aaKnown RBP12.23□□□□□ -0.45
BRCA1-228ENST00000618469 SEC22AQ96IW7 307 aa12.23□□□□□ -0.45
BRCA1-228ENST00000618469 TP53RKQ96S44 253 aa12.23□□□□□ -0.45
BRCA1-228ENST00000618469 SRSF8Q9BRL6 282 aaKnown RBP12.23□□□□□ -0.45
BRCA1-228ENST00000618469 TEX50A0A1B0GTY4 177 aa12.22□□□□□ -0.45
BRCA1-228ENST00000618469 ANKRD20A5PA0PJZ0 165 aa12.22□□□□□ -0.45
BRCA1-228ENST00000618469 DBX1A6NMT0 343 aa12.22□□□□□ -0.45
BRCA1-228ENST00000618469 PPP5D1E7EU14 171 aa12.22□□□□□ -0.45
BRCA1-228ENST00000618469 CTSDP07339 412 aaPredicted RBP12.22□□□□□ -0.45
BRCA1-228ENST00000618469 FAM209BQ5JX69 171 aa12.22□□□□□ -0.45
BRCA1-228ENST00000618469 HSD17B13Q7Z5P4 300 aaPredicted RBP12.22□□□□□ -0.45
BRCA1-228ENST00000618469 CADM3Q8N126 398 aa12.22□□□□□ -0.45
BRCA1-228ENST00000618469 GDPD1Q8N9F7 314 aa12.22□□□□□ -0.45
BRCA1-228ENST00000618469 EEF1AKMT3Q96AZ1 226 aa12.22□□□□□ -0.45
BRCA1-228ENST00000618469 CCDC140Q96MF4 163 aa12.22□□□□□ -0.45
BRCA1-228ENST00000618469 C14orf166Q9Y224 244 aaKnown RBP12.22□□□□□ -0.45
BRCA1-228ENST00000618469 TENM2Q9NT68 2774 aa12.22□□□□□ -0.45
BRCA1-228ENST00000618469 C3orf85A0A1B0GTC6 90 aa12.21□□□□□ -0.45
BRCA1-228ENST00000618469 MFSD2BA6NFX1 497 aa12.21□□□□□ -0.45
BRCA1-228ENST00000618469 ZNF701M0R085 212 aaPredicted RBP12.21□□□□□ -0.45
BRCA1-228ENST00000618469 OR13C7P0DN81 318 aa12.21□□□□□ -0.45
BRCA1-228ENST00000618469 SPNP16150 400 aa12.21□□□□□ -0.45
BRCA1-228ENST00000618469 S100A5P33763 92 aa12.21□□□□□ -0.45
BRCA1-228ENST00000618469 MECP2P51608 486 aaKnown RBP12.21□□□□□ -0.45
BRCA1-228ENST00000618469 AKR1C2P52895 323 aa12.21□□□□□ -0.45
BRCA1-228ENST00000618469 WT1-ASQ06250 92 aa12.21□□□□□ -0.45
BRCA1-228ENST00000618469 TRIM16LQ309B1 348 aa12.21□□□□□ -0.45
BRCA1-228ENST00000618469 OR51S1Q8NGJ8 323 aa12.21□□□□□ -0.45
BRCA1-228ENST00000618469 OR5B3Q8NH48 314 aa12.21□□□□□ -0.45
BRCA1-228ENST00000618469 OR4A16Q8NH70 328 aa12.21□□□□□ -0.45
BRCA1-228ENST00000618469 PRRT1Q99946 306 aa12.21□□□□□ -0.45
BRCA1-228ENST00000618469 SOSTQ9BQB4 213 aa12.21□□□□□ -0.45
BRCA1-228ENST00000618469 NDUFA4L2Q9NRX3 87 aa12.21□□□□□ -0.45
BRCA1-228ENST00000618469 TMEM14BQ9NUH8 114 aa12.21□□□□□ -0.45
BRCA1-228ENST00000618469 DMRT1Q9Y5R6 373 aa12.21□□□□□ -0.45
BRCA1-228ENST00000618469 HLA-AP01891 365 aaKnown RBP12.2□□□□□ -0.46
BRCA1-228ENST00000618469 TATDN3Q17R31 274 aa12.2□□□□□ -0.46
BRCA1-228ENST00000618469 KLK9Q2XQG4 91 aa12.2□□□□□ -0.46
BRCA1-228ENST00000618469 SP6Q3SY56 376 aa12.2□□□□□ -0.46
BRCA1-228ENST00000618469 PYDC2Q56P42 97 aa12.2□□□□□ -0.46
BRCA1-228ENST00000618469 CLEC19AQ6UXS0 136 aa12.2□□□□□ -0.46
BRCA1-228ENST00000618469 MCUBQ9NWR8 336 aa12.2□□□□□ -0.46
BRCA1-228ENST00000618469 FKBP11Q9NYL4 201 aa12.2□□□□□ -0.46
BRCA1-228ENST00000618469 KLK9Q9UKQ9 250 aa12.2□□□□□ -0.46
BRCA1-228ENST00000618469 V9GYH0 126 aa12.2□□□□□ -0.46
BRCA1-228ENST00000618469 CYB5BO43169 146 aa12.19□□□□□ -0.46
BRCA1-228ENST00000618469 IGKV1-5P01602 117 aa12.19□□□□□ -0.46
BRCA1-228ENST00000618469 GP9P14770 177 aa12.19□□□□□ -0.46
BRCA1-228ENST00000618469 ARL3P36405 182 aa12.19□□□□□ -0.46
BRCA1-228ENST00000618469 SURF2Q15527 256 aaPredicted RBP12.19□□□□□ -0.46
BRCA1-228ENST00000618469 IZUMO4Q1ZYL8 232 aa12.19□□□□□ -0.46
BRCA1-228ENST00000618469 CXorf58Q96LI9 332 aa12.19□□□□□ -0.46
BRCA1-228ENST00000618469 TMEM56Q96MV1 263 aa12.19□□□□□ -0.46
BRCA1-228ENST00000618469 THYN1Q9P016 225 aa12.19□□□□□ -0.46
BRCA1-228ENST00000618469 PEMTQ9UBM1 199 aa12.19□□□□□ -0.46
BRCA1-228ENST00000618469 F11RQ9Y624 299 aaKnown RBP12.19□□□□□ -0.46
BRCA1-228ENST00000618469 U3KQK5 164 aa12.19□□□□□ -0.46
BRCA1-228ENST00000618469 TEX13DA0A0J9YY54 714 aaPredicted RBP12.18□□□□□ -0.46
BRCA1-228ENST00000618469 GGCTO75223 188 aaKnown RBP12.18□□□□□ -0.46
BRCA1-228ENST00000618469 IGLV1-51P01701 117 aa12.18□□□□□ -0.46
BRCA1-228ENST00000618469 OR5AC1P0C628 307 aa12.18□□□□□ -0.46
BRCA1-228ENST00000618469 UCP1P25874 307 aa12.18□□□□□ -0.46
BRCA1-228ENST00000618469 ZNF79Q15937 498 aa12.18□□□□□ -0.46
BRCA1-228ENST00000618469 IL34Q6ZMJ4 242 aa12.18□□□□□ -0.46
BRCA1-228ENST00000618469 Q8N402 240 aa12.18□□□□□ -0.46
BRCA1-228ENST00000618469 RNASE11Q8TAA1 199 aaKnown RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms