RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 RBPMSQ93062 196 aaKnown RBP12.86□□□□□ -0.35
CCDC28A-202ENST00000611852 TMEM56Q96MV1 263 aa12.86□□□□□ -0.35
CCDC28A-202ENST00000611852 QTRT1Q9BXR0 403 aaKnown RBP12.86□□□□□ -0.35
CCDC28A-202ENST00000611852 GNB4Q9HAV0 340 aa12.86□□□□□ -0.35
CCDC28A-202ENST00000611852 OR51B2Q9Y5P1 312 aa12.86□□□□□ -0.35
CCDC28A-202ENST00000611852 TMEM56-RWDD3S4R434 201 aa12.86□□□□□ -0.35
CCDC28A-202ENST00000611852 PFDN1O60925 122 aa12.85□□□□□ -0.35
CCDC28A-202ENST00000611852 TRGV3P03979 118 aa12.85□□□□□ -0.35
CCDC28A-202ENST00000611852 AREGP15514 252 aa12.85□□□□□ -0.35
CCDC28A-202ENST00000611852 BCAP31P51572 246 aa12.85□□□□□ -0.35
CCDC28A-202ENST00000611852 ETV3LQ6ZN32 361 aa12.85□□□□□ -0.35
CCDC28A-202ENST00000611852 SLC25A42Q86VD7 318 aa12.85□□□□□ -0.35
CCDC28A-202ENST00000611852 SELENOHQ8IZQ5 122 aaKnown RBP12.85□□□□□ -0.35
CCDC28A-202ENST00000611852 OR1L8Q8NGR8 309 aa12.85□□□□□ -0.35
CCDC28A-202ENST00000611852 OR4A16Q8NH70 328 aa12.85□□□□□ -0.35
CCDC28A-202ENST00000611852 NDUFA4L2Q9NRX3 87 aa12.85□□□□□ -0.35
CCDC28A-202ENST00000611852 FKBP11Q9NYL4 201 aa12.85□□□□□ -0.35
CCDC28A-202ENST00000611852 PRR13Q9NZ81 148 aa12.85□□□□□ -0.35
CCDC28A-202ENST00000611852 A0A0G2JRQ6 117 aa12.84□□□□□ -0.35
CCDC28A-202ENST00000611852 IGLC7A0M8Q6 106 aa12.84□□□□□ -0.35
CCDC28A-202ENST00000611852 NPIPB5A8MRT5 1133 aa12.84□□□□□ -0.35
CCDC28A-202ENST00000611852 TRAPPC2P0DI81 140 aa12.84□□□□□ -0.35
CCDC28A-202ENST00000611852 TRAPPC2BP0DI82 140 aa12.84□□□□□ -0.35
CCDC28A-202ENST00000611852 TMEM268Q5VZI3 342 aa12.84□□□□□ -0.35
CCDC28A-202ENST00000611852 OR10W1Q8NGF6 305 aa12.84□□□□□ -0.35
CCDC28A-202ENST00000611852 OR5B3Q8NH48 314 aa12.84□□□□□ -0.35
CCDC28A-202ENST00000611852 RRNAD1Q96FB5 475 aaKnown RBP12.84□□□□□ -0.35
CCDC28A-202ENST00000611852 SRSF8Q9BRL6 282 aaKnown RBP12.84□□□□□ -0.35
CCDC28A-202ENST00000611852 ZNF257Q9Y2Q1 563 aa12.84□□□□□ -0.35
CCDC28A-202ENST00000611852 A0A0B4J293 547 aa12.83□□□□□ -0.35
CCDC28A-202ENST00000611852 I3L521 148 aa12.83□□□□□ -0.35
CCDC28A-202ENST00000611852 RBMXL2O75526 392 aaKnown RBP12.83□□□□□ -0.35
CCDC28A-202ENST00000611852 PF4P02776 101 aa12.83□□□□□ -0.35
CCDC28A-202ENST00000611852 PRH1P02810 166 aa12.83□□□□□ -0.35
CCDC28A-202ENST00000611852 CRYGCP07315 174 aa12.83□□□□□ -0.35
CCDC28A-202ENST00000611852 ANXA3P12429 323 aa12.83□□□□□ -0.35
CCDC28A-202ENST00000611852 PSMB6P28072 239 aa12.83□□□□□ -0.35
CCDC28A-202ENST00000611852 RUNX1Q01196 453 aa12.83□□□□□ -0.35
CCDC28A-202ENST00000611852 DEFB136Q30KP8 78 aa12.83□□□□□ -0.35
CCDC28A-202ENST00000611852 THOC7Q6I9Y2 204 aaKnown RBP12.83□□□□□ -0.35
CCDC28A-202ENST00000611852 ZNF429Q86V71 674 aa12.83□□□□□ -0.35
CCDC28A-202ENST00000611852 IL22RA2Q969J5 263 aa12.83□□□□□ -0.35
CCDC28A-202ENST00000611852 RAX2Q96IS3 184 aa12.83□□□□□ -0.35
CCDC28A-202ENST00000611852 OR5B12Q96R08 314 aa12.83□□□□□ -0.35
CCDC28A-202ENST00000611852 FLVCR2Q9UPI3 526 aa12.83□□□□□ -0.35
CCDC28A-202ENST00000611852 TRBV9A0A0B4J1U6 114 aa12.83□□□□□ -0.36
CCDC28A-202ENST00000611852 REG1AP05451 166 aa12.83□□□□□ -0.36
CCDC28A-202ENST00000611852 CTRB1P17538 263 aa12.83□□□□□ -0.36
CCDC28A-202ENST00000611852 WT1-ASQ06250 92 aa12.83□□□□□ -0.36
CCDC28A-202ENST00000611852 PPP1R1AQ13522 171 aa12.83□□□□□ -0.36
CCDC28A-202ENST00000611852 CTRB2Q6GPI1 263 aa12.83□□□□□ -0.36
CCDC28A-202ENST00000611852 C19orf35Q6ZS72 473 aa12.83□□□□□ -0.36
CCDC28A-202ENST00000611852 FAM219AQ8IW50 185 aa12.83□□□□□ -0.36
CCDC28A-202ENST00000611852 SLC35G3Q8N808 338 aa12.83□□□□□ -0.36
CCDC28A-202ENST00000611852 RNASE11Q8TAA1 199 aaKnown RBP12.83□□□□□ -0.36
CCDC28A-202ENST00000611852 DUX3Q96PT4 197 aa12.83□□□□□ -0.36
CCDC28A-202ENST00000611852 P2RX4Q99571 388 aa12.83□□□□□ -0.36
CCDC28A-202ENST00000611852 MARVELD1Q9BSK0 173 aa12.83□□□□□ -0.36
CCDC28A-202ENST00000611852 HINT2Q9BX68 163 aa12.83□□□□□ -0.36
CCDC28A-202ENST00000611852 NUDT15Q9NV35 164 aa12.83□□□□□ -0.36
CCDC28A-202ENST00000611852 A0A0G2JLM5 398 aa12.82□□□□□ -0.36
CCDC28A-202ENST00000611852 CCL24O00175 119 aa12.82□□□□□ -0.36
CCDC28A-202ENST00000611852 IGHV3-11P01762 117 aa12.82□□□□□ -0.36
CCDC28A-202ENST00000611852 TCRBP04435 133 aa12.82□□□□□ -0.36
CCDC28A-202ENST00000611852 VAMP1P23763 118 aa12.82□□□□□ -0.36
CCDC28A-202ENST00000611852 MYCNOSP40205 109 aa12.82□□□□□ -0.36
CCDC28A-202ENST00000611852 UBE2MP61081 183 aaKnown RBP12.82□□□□□ -0.36
CCDC28A-202ENST00000611852 DEFA5Q01523 94 aa12.82□□□□□ -0.36
CCDC28A-202ENST00000611852 Q6ZRM9 215 aa12.82□□□□□ -0.36
CCDC28A-202ENST00000611852 HSD17B13Q7Z5P4 300 aaPredicted RBP12.82□□□□□ -0.36
CCDC28A-202ENST00000611852 LSM10Q969L4 123 aaKnown RBP12.82□□□□□ -0.36
CCDC28A-202ENST00000611852 INMT-MINDY4F8WBC2 141 aa12.81□□□□□ -0.36
CCDC28A-202ENST00000611852 SFT2D2O95562 160 aa12.81□□□□□ -0.36
CCDC28A-202ENST00000611852 LGALS1P09382 135 aaKnown RBP12.81□□□□□ -0.36
CCDC28A-202ENST00000611852 OR13C7P0DN81 318 aa12.81□□□□□ -0.36
CCDC28A-202ENST00000611852 HSPE1P61604 102 aaKnown RBP12.81□□□□□ -0.36
CCDC28A-202ENST00000611852 SRPXP78539 464 aa12.81□□□□□ -0.36
CCDC28A-202ENST00000611852 RHOGP84095 191 aa12.81□□□□□ -0.36
CCDC28A-202ENST00000611852 MRPL41Q8IXM3 137 aaKnown RBP12.81□□□□□ -0.36
CCDC28A-202ENST00000611852 LGI3Q8N145 548 aa12.81□□□□□ -0.36
CCDC28A-202ENST00000611852 OR11H1Q8NG94 326 aa12.81□□□□□ -0.36
CCDC28A-202ENST00000611852 USMG5Q96IX5 58 aa12.81□□□□□ -0.36
CCDC28A-202ENST00000611852 ALX4Q9H161 411 aaPredicted RBP12.81□□□□□ -0.36
CCDC28A-202ENST00000611852 A0A0B4J2A0 478 aa12.8□□□□□ -0.36
CCDC28A-202ENST00000611852 C13orf42A0A1B0GVH6 325 aa12.8□□□□□ -0.36
CCDC28A-202ENST00000611852 FAM223BA6NKX1 122 aa12.8□□□□□ -0.36
CCDC28A-202ENST00000611852 DHFRP00374 187 aa12.8□□□□□ -0.36
CCDC28A-202ENST00000611852 PRCDQ00LT1 54 aa12.8□□□□□ -0.36
CCDC28A-202ENST00000611852 FHL3Q13643 280 aa12.8□□□□□ -0.36
CCDC28A-202ENST00000611852 KLK9Q2XQG4 91 aa12.8□□□□□ -0.36
CCDC28A-202ENST00000611852 ANKRD55Q3KP44 614 aa12.8□□□□□ -0.36
CCDC28A-202ENST00000611852 LYZL2Q7Z4W2 148 aa12.8□□□□□ -0.36
CCDC28A-202ENST00000611852 FAM223AQ8IWN6 122 aa12.8□□□□□ -0.36
CCDC28A-202ENST00000611852 LINC00482Q8N8I6 264 aa12.8□□□□□ -0.36
CCDC28A-202ENST00000611852 NECAP1Q8NC96 275 aa12.8□□□□□ -0.36
CCDC28A-202ENST00000611852 WFDC9Q8NEX5 89 aa12.8□□□□□ -0.36
CCDC28A-202ENST00000611852 GPR146Q96CH1 333 aa12.8□□□□□ -0.36
CCDC28A-202ENST00000611852 FANCD2OSQ96PS1 177 aa12.8□□□□□ -0.36
CCDC28A-202ENST00000611852 C20orf85Q9H1P6 137 aa12.8□□□□□ -0.36
CCDC28A-202ENST00000611852 SHPKQ9UHJ6 478 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 361.4 ms