RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 SNAPC5O75971 98 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 PF4P02776 101 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 FGF2P09038 288 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 LGALS1P09382 135 aaKnown RBP10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 TRAPPC2P0DI81 140 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 TRAPPC2BP0DI82 140 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 IGLL1P15814 213 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 IFITM3Q01628 133 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 DHODHQ02127 395 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 FHL3Q13643 280 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 KLK9Q2XQG4 91 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 OXLD1Q5BKU9 147 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 TMED4Q7Z7H5 227 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 C1QL4Q86Z23 238 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 OR1L8Q8NGR8 309 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 OR1N2Q8NGR9 330 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 GPR146Q96CH1 333 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 TMEM56Q96MV1 263 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 SCGB3A2Q96PL1 93 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 SLC25A21Q9BQT8 299 aaPredicted RBP10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 KLK9Q9UKQ9 250 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 TMEM56-RWDD3S4R434 201 aa10.97□□□□□ -0.65
SHKBP1-217ENST00000598558 IGHV4OR15-8A0A075B7B6 117 aa10.96□□□□□ -0.65
SHKBP1-217ENST00000598558 A0A087WW49 117 aa10.96□□□□□ -0.65
SHKBP1-217ENST00000598558 OR2J3O76001 311 aa10.96□□□□□ -0.65
SHKBP1-217ENST00000598558 NDUFB6O95139 128 aa10.96□□□□□ -0.65
SHKBP1-217ENST00000598558 NDUFB8O95169 186 aa10.96□□□□□ -0.65
SHKBP1-217ENST00000598558 TRBV12-3P01733 135 aa10.96□□□□□ -0.65
SHKBP1-217ENST00000598558 SLC6A1P30531 599 aa10.96□□□□□ -0.65
SHKBP1-217ENST00000598558 INPP1P49441 399 aa10.96□□□□□ -0.65
SHKBP1-217ENST00000598558 MFAP2P55001 183 aa10.96□□□□□ -0.65
SHKBP1-217ENST00000598558 RHOGP84095 191 aa10.96□□□□□ -0.65
SHKBP1-217ENST00000598558 SGPP2Q8IWX5 399 aa10.96□□□□□ -0.65
SHKBP1-217ENST00000598558 HINT2Q9BX68 163 aa10.96□□□□□ -0.65
SHKBP1-217ENST00000598558 PRNDQ9UKY0 176 aa10.96□□□□□ -0.65
SHKBP1-217ENST00000598558 ANKRD34BA5PLL1 514 aa10.95□□□□□ -0.66
SHKBP1-217ENST00000598558 NAP1L6A6NFF2 107 aa10.95□□□□□ -0.66
SHKBP1-217ENST00000598558 B3GALNT1O75752 331 aa10.95□□□□□ -0.66
SHKBP1-217ENST00000598558 OR13C7P0DN81 318 aa10.95□□□□□ -0.66
SHKBP1-217ENST00000598558 CD40LGP29965 261 aa10.95□□□□□ -0.66
SHKBP1-217ENST00000598558 ANKRD55Q3KP44 614 aa10.95□□□□□ -0.66
SHKBP1-217ENST00000598558 SPINK9Q5DT21 86 aa10.95□□□□□ -0.66
SHKBP1-217ENST00000598558 SAMD5Q5TGI4 173 aa10.95□□□□□ -0.66
SHKBP1-217ENST00000598558 TMEM268Q5VZI3 342 aa10.95□□□□□ -0.66
SHKBP1-217ENST00000598558 LYZL2Q7Z4W2 148 aa10.95□□□□□ -0.66
SHKBP1-217ENST00000598558 SLC25A42Q86VD7 318 aa10.95□□□□□ -0.66
SHKBP1-217ENST00000598558 OR4A16Q8NH70 328 aa10.95□□□□□ -0.66
SHKBP1-217ENST00000598558 S100ZQ8WXG8 99 aa10.95□□□□□ -0.66
SHKBP1-217ENST00000598558 RBPMSQ93062 196 aaKnown RBP10.95□□□□□ -0.66
SHKBP1-217ENST00000598558 TSC22D3Q99576 134 aa10.95□□□□□ -0.66
SHKBP1-217ENST00000598558 CCDC32Q9BV29 185 aa10.95□□□□□ -0.66
SHKBP1-217ENST00000598558 TBC1D24Q9ULP9 559 aa10.95□□□□□ -0.66
SHKBP1-217ENST00000598558 ZNF257Q9Y2Q1 563 aa10.95□□□□□ -0.66
SHKBP1-217ENST00000598558 S4R3C0 116 aa10.95□□□□□ -0.66
SHKBP1-217ENST00000598558 IGLV11-55A0A075B6I3 123 aa10.94□□□□□ -0.66
SHKBP1-217ENST00000598558 ST8SIA3O43173 380 aa10.94□□□□□ -0.66
SHKBP1-217ENST00000598558 CD33P20138 364 aa10.94□□□□□ -0.66
SHKBP1-217ENST00000598558 AKR1C2P52895 323 aa10.94□□□□□ -0.66
SHKBP1-217ENST00000598558 SLURP1P55000 103 aa10.94□□□□□ -0.66
SHKBP1-217ENST00000598558 HSPE1P61604 102 aaKnown RBP10.94□□□□□ -0.66
SHKBP1-217ENST00000598558 PPP1R1AQ13522 171 aa10.94□□□□□ -0.66
SHKBP1-217ENST00000598558 RBMS2Q15434 407 aaKnown RBP10.94□□□□□ -0.66
SHKBP1-217ENST00000598558 ZNF343Q6P1L6 599 aa10.94□□□□□ -0.66
SHKBP1-217ENST00000598558 SLC35G3Q8N808 338 aa10.94□□□□□ -0.66
SHKBP1-217ENST00000598558 C7orf50Q9BRJ6 194 aaKnown RBP10.94□□□□□ -0.66
SHKBP1-217ENST00000598558 SRSF8Q9BRL6 282 aaKnown RBP10.94□□□□□ -0.66
SHKBP1-217ENST00000598558 FBXL7Q9UJT9 491 aa10.94□□□□□ -0.66
SHKBP1-217ENST00000598558 KCNIP3Q9Y2W7 256 aa10.94□□□□□ -0.66
SHKBP1-217ENST00000598558 C13orf42A0A1B0GVH6 325 aa10.93□□□□□ -0.66
SHKBP1-217ENST00000598558 LYRM1O43325 122 aa10.93□□□□□ -0.66
SHKBP1-217ENST00000598558 IGHV3-23P01764 117 aa10.93□□□□□ -0.66
SHKBP1-217ENST00000598558 HSPB1P04792 205 aaKnown RBP10.93□□□□□ -0.66
SHKBP1-217ENST00000598558 RAB25P57735 213 aa10.93□□□□□ -0.66
SHKBP1-217ENST00000598558 ZNF616Q08AN1 781 aa10.93□□□□□ -0.66
SHKBP1-217ENST00000598558 TMEM128Q5BJH2 165 aa10.93□□□□□ -0.66
SHKBP1-217ENST00000598558 C11orf87Q6NUJ2 197 aa10.93□□□□□ -0.66
SHKBP1-217ENST00000598558 ZNF429Q86V71 674 aa10.93□□□□□ -0.66
SHKBP1-217ENST00000598558 OR5B3Q8NH48 314 aa10.93□□□□□ -0.66
SHKBP1-217ENST00000598558 DCUN1D4Q92564 292 aa10.93□□□□□ -0.66
SHKBP1-217ENST00000598558 DLX4Q92988 240 aaPredicted RBP10.93□□□□□ -0.66
SHKBP1-217ENST00000598558 USMG5Q96IX5 58 aa10.93□□□□□ -0.66
SHKBP1-217ENST00000598558 FKBP11Q9NYL4 201 aa10.93□□□□□ -0.66
SHKBP1-217ENST00000598558 A0A0G2JLM5 398 aa10.92□□□□□ -0.66
SHKBP1-217ENST00000598558 MFSD2BA6NFX1 497 aa10.92□□□□□ -0.66
SHKBP1-217ENST00000598558 LINC01619G3V211 115 aa10.92□□□□□ -0.66
SHKBP1-217ENST00000598558 SFT2D2O95562 160 aa10.92□□□□□ -0.66
SHKBP1-217ENST00000598558 ANXA7P20073 488 aaKnown RBP10.92□□□□□ -0.66
SHKBP1-217ENST00000598558 PRCDQ00LT1 54 aa10.92□□□□□ -0.66
SHKBP1-217ENST00000598558 ATP5G2Q06055 141 aa10.92□□□□□ -0.66
SHKBP1-217ENST00000598558 ZNF846Q147U1 533 aa10.92□□□□□ -0.66
SHKBP1-217ENST00000598558 C15orf32Q32M92 178 aa10.92□□□□□ -0.66
SHKBP1-217ENST00000598558 BEAN1Q3B7T3 259 aa10.92□□□□□ -0.66
SHKBP1-217ENST00000598558 AARDQ4LEZ3 155 aa10.92□□□□□ -0.66
SHKBP1-217ENST00000598558 CENPSQ8N2Z9 138 aa10.92□□□□□ -0.66
SHKBP1-217ENST00000598558 NECAP1Q8NC96 275 aa10.92□□□□□ -0.66
SHKBP1-217ENST00000598558 IL22RA2Q969J5 263 aa10.92□□□□□ -0.66
SHKBP1-217ENST00000598558 LSM10Q969L4 123 aaKnown RBP10.92□□□□□ -0.66
SHKBP1-217ENST00000598558 RRNAD1Q96FB5 475 aaKnown RBP10.92□□□□□ -0.66
SHKBP1-217ENST00000598558 CACNG5Q9UF02 275 aa10.92□□□□□ -0.66
SHKBP1-217ENST00000598558 FAM223BA6NKX1 122 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms