RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 SPANXN2Q5MJ10 180 aa10.66□□□□□ -0.7
UPF1-205ENST00000598209 THOC7Q6I9Y2 204 aaKnown RBP10.66□□□□□ -0.7
UPF1-205ENST00000598209 H2BFWTQ7Z2G1 175 aa10.66□□□□□ -0.7
UPF1-205ENST00000598209 Q8N402 240 aa10.66□□□□□ -0.7
UPF1-205ENST00000598209 NECAP1Q8NC96 275 aa10.66□□□□□ -0.7
UPF1-205ENST00000598209 OR6Q1Q8NGQ2 317 aa10.66□□□□□ -0.7
UPF1-205ENST00000598209 TSC22D3Q99576 134 aa10.66□□□□□ -0.7
UPF1-205ENST00000598209 RTBDNQ9BSG5 229 aaPredicted RBP10.66□□□□□ -0.7
UPF1-205ENST00000598209 MCUBQ9NWR8 336 aa10.66□□□□□ -0.7
UPF1-205ENST00000598209 PEF1Q9UBV8 284 aaKnown RBP10.66□□□□□ -0.7
UPF1-205ENST00000598209 SCP2D1Q9UJQ7 156 aa10.66□□□□□ -0.7
UPF1-205ENST00000598209 PRNDQ9UKY0 176 aa10.66□□□□□ -0.7
UPF1-205ENST00000598209 OR51B2Q9Y5P1 312 aa10.66□□□□□ -0.7
UPF1-205ENST00000598209 C15orf61A6NNL5 157 aa10.65□□□□□ -0.7
UPF1-205ENST00000598209 TRBV12-3P01733 135 aa10.65□□□□□ -0.7
UPF1-205ENST00000598209 DEFA4P12838 97 aa10.65□□□□□ -0.7
UPF1-205ENST00000598209 ZP3P21754 424 aa10.65□□□□□ -0.7
UPF1-205ENST00000598209 ETV6P41212 452 aa10.65□□□□□ -0.7
UPF1-205ENST00000598209 KLF9Q13886 244 aaPredicted RBP10.65□□□□□ -0.7
UPF1-205ENST00000598209 C15orf32Q32M92 178 aa10.65□□□□□ -0.7
UPF1-205ENST00000598209 SP6Q3SY56 376 aa10.65□□□□□ -0.7
UPF1-205ENST00000598209 OR10W1Q8NGF6 305 aa10.65□□□□□ -0.7
UPF1-205ENST00000598209 FANCD2OSQ96PS1 177 aa10.65□□□□□ -0.7
UPF1-205ENST00000598209 HINT2Q9BX68 163 aa10.65□□□□□ -0.7
UPF1-205ENST00000598209 C5orf66Q9H5L9 145 aa10.65□□□□□ -0.7
UPF1-205ENST00000598209 NDUFA4L2Q9NRX3 87 aa10.65□□□□□ -0.7
UPF1-205ENST00000598209 TMEM14BQ9NUH8 114 aa10.65□□□□□ -0.7
UPF1-205ENST00000598209 FKBP11Q9NYL4 201 aa10.65□□□□□ -0.7
UPF1-205ENST00000598209 FBXL7Q9UJT9 491 aa10.65□□□□□ -0.7
UPF1-205ENST00000598209 GPR132Q9UNW8 380 aa10.65□□□□□ -0.7
UPF1-205ENST00000598209 TEX13DA0A0J9YY54 714 aaPredicted RBP10.64□□□□□ -0.71
UPF1-205ENST00000598209 DBX1A6NMT0 343 aa10.64□□□□□ -0.71
UPF1-205ENST00000598209 B3GALNT1O75752 331 aa10.64□□□□□ -0.71
UPF1-205ENST00000598209 NDUFB8O95169 186 aa10.64□□□□□ -0.71
UPF1-205ENST00000598209 HIST1H1BP16401 226 aaKnown RBP10.64□□□□□ -0.71
UPF1-205ENST00000598209 UCP1P25874 307 aa10.64□□□□□ -0.71
UPF1-205ENST00000598209 FAUP35544 74 aaKnown RBP10.64□□□□□ -0.71
UPF1-205ENST00000598209 AP3S2P59780 193 aa10.64□□□□□ -0.71
UPF1-205ENST00000598209 KLK9Q2XQG4 91 aa10.64□□□□□ -0.71
UPF1-205ENST00000598209 TRIM16LQ309B1 348 aa10.64□□□□□ -0.71
UPF1-205ENST00000598209 HSD17B13Q7Z5P4 300 aaPredicted RBP10.64□□□□□ -0.71
UPF1-205ENST00000598209 TOMM5Q8N4H5 51 aa10.64□□□□□ -0.71
UPF1-205ENST00000598209 GDPD1Q8N9F7 314 aa10.64□□□□□ -0.71
UPF1-205ENST00000598209 OR5B3Q8NH48 314 aa10.64□□□□□ -0.71
UPF1-205ENST00000598209 OR4A16Q8NH70 328 aa10.64□□□□□ -0.71
UPF1-205ENST00000598209 MRAPQ8TCY5 172 aa10.64□□□□□ -0.71
UPF1-205ENST00000598209 SRRQ9GZT4 340 aa10.64□□□□□ -0.71
UPF1-205ENST00000598209 NAA60Q9H7X0 242 aa10.64□□□□□ -0.71
UPF1-205ENST00000598209 KLK9Q9UKQ9 250 aa10.64□□□□□ -0.71
UPF1-205ENST00000598209 PRKDCP78527 4128 aaKnown RBP10.64□□□□□ -0.71
UPF1-205ENST00000598209 IGLV11-55A0A075B6I3 123 aa10.63□□□□□ -0.71
UPF1-205ENST00000598209 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.63□□□□□ -0.71
UPF1-205ENST00000598209 ATG12O94817 140 aa10.63□□□□□ -0.71
UPF1-205ENST00000598209 IGKV1-5P01602 117 aa10.63□□□□□ -0.71
UPF1-205ENST00000598209 OR5AC1P0C628 307 aa10.63□□□□□ -0.71
UPF1-205ENST00000598209 OR13C7P0DN81 318 aa10.63□□□□□ -0.71
UPF1-205ENST00000598209 INSL3P51460 131 aa10.63□□□□□ -0.71
UPF1-205ENST00000598209 AKR1C2P52895 323 aa10.63□□□□□ -0.71
UPF1-205ENST00000598209 WT1-ASQ06250 92 aa10.63□□□□□ -0.71
UPF1-205ENST00000598209 IZUMO4Q1ZYL8 232 aa10.63□□□□□ -0.71
UPF1-205ENST00000598209 ACSM6Q6P461 480 aa10.63□□□□□ -0.71
UPF1-205ENST00000598209 LSM10Q969L4 123 aaKnown RBP10.63□□□□□ -0.71
UPF1-205ENST00000598209 SCGB3A2Q96PL1 93 aa10.63□□□□□ -0.71
UPF1-205ENST00000598209 ZMAT5Q9UDW3 170 aaKnown RBP10.63□□□□□ -0.71
UPF1-205ENST00000598209 WI2-2373I1.2A0A1W2PRP0 233 aa10.62□□□□□ -0.71
UPF1-205ENST00000598209 CRYM-AS1A6NIL9 109 aa10.62□□□□□ -0.71
UPF1-205ENST00000598209 SAP30O75446 220 aa10.62□□□□□ -0.71
UPF1-205ENST00000598209 IGHV3-23P01764 117 aa10.62□□□□□ -0.71
UPF1-205ENST00000598209 P0C879 139 aa10.62□□□□□ -0.71
UPF1-205ENST00000598209 MECP2P51608 486 aaKnown RBP10.62□□□□□ -0.71
UPF1-205ENST00000598209 KLF5Q13887 457 aaPredicted RBP10.62□□□□□ -0.71
UPF1-205ENST00000598209 RPEL1Q2QD12 228 aa10.62□□□□□ -0.71
UPF1-205ENST00000598209 FAM209BQ5JX69 171 aa10.62□□□□□ -0.71
UPF1-205ENST00000598209 ZNF429Q86V71 674 aa10.62□□□□□ -0.71
UPF1-205ENST00000598209 GLYATL2Q8WU03 294 aa10.62□□□□□ -0.71
UPF1-205ENST00000598209 TMEM56Q96MV1 263 aa10.62□□□□□ -0.71
UPF1-205ENST00000598209 TMEM222Q9H0R3 208 aa10.62□□□□□ -0.71
UPF1-205ENST00000598209 DMRT1Q9Y5R6 373 aa10.62□□□□□ -0.71
UPF1-205ENST00000598209 S4R3C0 116 aa10.62□□□□□ -0.71
UPF1-205ENST00000598209 SORL1Q92673 2214 aa10.62□□□□□ -0.71
UPF1-205ENST00000598209 K7EIL1 84 aa10.61□□□□□ -0.71
UPF1-205ENST00000598209 BMPR1BO00238 502 aa10.61□□□□□ -0.71
UPF1-205ENST00000598209 CYB5BO43169 146 aa10.61□□□□□ -0.71
UPF1-205ENST00000598209 SYNJ2BPP57105 145 aa10.61□□□□□ -0.71
UPF1-205ENST00000598209 DHODHQ02127 395 aa10.61□□□□□ -0.71
UPF1-205ENST00000598209 ZNF57Q68EA5 555 aaPredicted RBP10.61□□□□□ -0.71
UPF1-205ENST00000598209 SGPP2Q8IWX5 399 aa10.61□□□□□ -0.71
UPF1-205ENST00000598209 RNASE11Q8TAA1 199 aaKnown RBP10.61□□□□□ -0.71
UPF1-205ENST00000598209 DEDD2Q8WXF8 326 aa10.61□□□□□ -0.71
UPF1-205ENST00000598209 TMEM230Q96A57 120 aa10.61□□□□□ -0.71
UPF1-205ENST00000598209 EEF1AKMT3Q96AZ1 226 aa10.61□□□□□ -0.71
UPF1-205ENST00000598209 RRNAD1Q96FB5 475 aaKnown RBP10.61□□□□□ -0.71
UPF1-205ENST00000598209 CCDC140Q96MF4 163 aa10.61□□□□□ -0.71
UPF1-205ENST00000598209 ELOVL1Q9BW60 279 aa10.61□□□□□ -0.71
UPF1-205ENST00000598209 A0A0B4J293 547 aa10.6□□□□□ -0.71
UPF1-205ENST00000598209 A0A0G2JRQ6 117 aa10.6□□□□□ -0.71
UPF1-205ENST00000598209 MFSD2BA6NFX1 497 aa10.6□□□□□ -0.71
UPF1-205ENST00000598209 PPP5D1E7EU14 171 aa10.6□□□□□ -0.71
UPF1-205ENST00000598209 CDS2O95674 445 aa10.6□□□□□ -0.71
UPF1-205ENST00000598209 HSPE1P61604 102 aaKnown RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms