RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 HLA-DRB1P01911 266 aa12.14□□□□□ -0.47
TRIM28-209ENST00000597423 OPN1MWP04001 364 aa12.14□□□□□ -0.47
TRIM28-209ENST00000597423 OPN1MW2P0DN77 364 aa12.14□□□□□ -0.47
TRIM28-209ENST00000597423 OPN1MW3P0DN78 364 aa12.14□□□□□ -0.47
TRIM28-209ENST00000597423 HTR2BP41595 481 aa12.14□□□□□ -0.47
TRIM28-209ENST00000597423 RAB11AP62491 216 aa12.14□□□□□ -0.47
TRIM28-209ENST00000597423 LY6EQ16553 131 aa12.14□□□□□ -0.47
TRIM28-209ENST00000597423 SPANXN5Q5MJ07 72 aa12.14□□□□□ -0.47
TRIM28-209ENST00000597423 STX12Q86Y82 276 aa12.14□□□□□ -0.47
TRIM28-209ENST00000597423 AQP10Q96PS8 301 aa12.14□□□□□ -0.47
TRIM28-209ENST00000597423 TPSG1Q9NRR2 321 aa12.14□□□□□ -0.47
TRIM28-209ENST00000597423 MDFIC2A0A1B0GVS7 189 aa12.13□□□□□ -0.47
TRIM28-209ENST00000597423 TSPAN9O75954 239 aa12.13□□□□□ -0.47
TRIM28-209ENST00000597423 SRD5A1P18405 259 aa12.13□□□□□ -0.47
TRIM28-209ENST00000597423 VDAC2P45880 294 aaPredicted RBP12.13□□□□□ -0.47
TRIM28-209ENST00000597423 AP2S1P53680 142 aaPredicted RBP12.13□□□□□ -0.47
TRIM28-209ENST00000597423 PAX9P55771 341 aa12.13□□□□□ -0.47
TRIM28-209ENST00000597423 BAXQ07812 192 aa12.13□□□□□ -0.47
TRIM28-209ENST00000597423 ZNF345Q14585 488 aa12.13□□□□□ -0.47
TRIM28-209ENST00000597423 IL17RELQ6ZVW7 336 aa12.13□□□□□ -0.47
TRIM28-209ENST00000597423 TMEM219Q86XT9 240 aa12.13□□□□□ -0.47
TRIM28-209ENST00000597423 C5orf56Q8N8D9 126 aa12.13□□□□□ -0.47
TRIM28-209ENST00000597423 GRPEL2Q8TAA5 225 aa12.13□□□□□ -0.47
TRIM28-209ENST00000597423 HSPB11Q9Y547 144 aa12.13□□□□□ -0.47
TRIM28-209ENST00000597423 MSGN1A6NI15 193 aa12.12□□□□□ -0.47
TRIM28-209ENST00000597423 TAAR5O14804 337 aa12.12□□□□□ -0.47
TRIM28-209ENST00000597423 CYB5BO43169 146 aa12.12□□□□□ -0.47
TRIM28-209ENST00000597423 IGHV4-59P01825 116 aa12.12□□□□□ -0.47
TRIM28-209ENST00000597423 HKR1P10072 659 aa12.12□□□□□ -0.47
TRIM28-209ENST00000597423 NKX2-5P52952 324 aaPredicted RBP12.12□□□□□ -0.47
TRIM28-209ENST00000597423 HBG1P69891 147 aa12.12□□□□□ -0.47
TRIM28-209ENST00000597423 HBG2P69892 147 aa12.12□□□□□ -0.47
TRIM28-209ENST00000597423 CX3CL1P78423 397 aa12.12□□□□□ -0.47
TRIM28-209ENST00000597423 MRGPRG-AS1Q2M3A8 158 aa12.12□□□□□ -0.47
TRIM28-209ENST00000597423 SPINK9Q5DT21 86 aa12.12□□□□□ -0.47
TRIM28-209ENST00000597423 TMEM252Q8N6L7 170 aa12.12□□□□□ -0.47
TRIM28-209ENST00000597423 SIGLECL1Q8N7X8 197 aa12.12□□□□□ -0.47
TRIM28-209ENST00000597423 ABHD5Q8WTS1 349 aa12.12□□□□□ -0.47
TRIM28-209ENST00000597423 SRSF12Q8WXF0 261 aaKnown RBP12.12□□□□□ -0.47
TRIM28-209ENST00000597423 TMEM68Q96MH6 324 aa12.12□□□□□ -0.47
TRIM28-209ENST00000597423 C11orf1Q9H5F2 150 aa12.12□□□□□ -0.47
TRIM28-209ENST00000597423 VPREB3Q9UKI3 123 aa12.12□□□□□ -0.47
TRIM28-209ENST00000597423 PAIP2BQ9ULR5 123 aaKnown RBP12.12□□□□□ -0.47
TRIM28-209ENST00000597423 MYO9AB2RTY4 2548 aa12.12□□□□□ -0.47
TRIM28-209ENST00000597423 BAHCC1Q9P281 2608 aa12.12□□□□□ -0.47
TRIM28-209ENST00000597423 KANTRA0A1W2PQU2 76 aa12.11□□□□□ -0.47
TRIM28-209ENST00000597423 FAM24AA6NFZ4 105 aa12.11□□□□□ -0.47
TRIM28-209ENST00000597423 KCNAB3O43448 404 aa12.11□□□□□ -0.47
TRIM28-209ENST00000597423 TMEM50AO95807 157 aa12.11□□□□□ -0.47
TRIM28-209ENST00000597423 OR8U8P0C7N1 319 aa12.11□□□□□ -0.47
TRIM28-209ENST00000597423 OR13C7P0DN81 318 aa12.11□□□□□ -0.47
TRIM28-209ENST00000597423 MYOD1P15172 320 aa12.11□□□□□ -0.47
TRIM28-209ENST00000597423 S100A11P31949 105 aa12.11□□□□□ -0.47
TRIM28-209ENST00000597423 SULT1A1P50225 295 aa12.11□□□□□ -0.47
TRIM28-209ENST00000597423 TMEM267Q0VDI3 215 aaPredicted RBP12.11□□□□□ -0.47
TRIM28-209ENST00000597423 LGALSLQ3ZCW2 172 aaPredicted RBP12.11□□□□□ -0.47
TRIM28-209ENST00000597423 TMUB2Q71RG4 321 aa12.11□□□□□ -0.47
TRIM28-209ENST00000597423 C9orf62Q8N4C0 152 aa12.11□□□□□ -0.47
TRIM28-209ENST00000597423 KCNRGQ8N5I3 272 aa12.11□□□□□ -0.47
TRIM28-209ENST00000597423 OR1L6Q8NGR2 347 aa12.11□□□□□ -0.47
TRIM28-209ENST00000597423 ARPC1AQ92747 370 aa12.11□□□□□ -0.47
TRIM28-209ENST00000597423 SMR3AQ99954 134 aa12.11□□□□□ -0.47
TRIM28-209ENST00000597423 ARL6Q9H0F7 186 aa12.11□□□□□ -0.47
TRIM28-209ENST00000597423 FLNAP21333 2647 aaKnown RBP12.11□□□□□ -0.47
TRIM28-209ENST00000597423 CSPG4Q6UVK1 2322 aa12.1□□□□□ -0.47
TRIM28-209ENST00000597423 TEX15Q9BXT5 2789 aa12.1□□□□□ -0.47
TRIM28-209ENST00000597423 HOXA3O43365 443 aaPredicted RBP12.1□□□□□ -0.47
TRIM28-209ENST00000597423 NPY1RP25929 384 aa12.1□□□□□ -0.47
TRIM28-209ENST00000597423 EWSR1Q01844 656 aaKnown RBP eCLIP12.1□□□□□ -0.47
TRIM28-209ENST00000597423 TMEM14EPQ6UXP3 125 aa12.1□□□□□ -0.47
TRIM28-209ENST00000597423 SLC24A4Q8NFF2 622 aa12.1□□□□□ -0.47
TRIM28-209ENST00000597423 OR10P1Q8NGE3 313 aa12.1□□□□□ -0.47
TRIM28-209ENST00000597423 ZNF418Q8TF45 676 aaPredicted RBP12.1□□□□□ -0.47
TRIM28-209ENST00000597423 ZNF48Q96MX3 618 aaPredicted RBP12.1□□□□□ -0.47
TRIM28-209ENST00000597423 IGHV7-81A0A0B4J1V7 117 aa12.09□□□□□ -0.47
TRIM28-209ENST00000597423 H3BP45 60 aa12.09□□□□□ -0.47
TRIM28-209ENST00000597423 IFNA4P05014 189 aa12.09□□□□□ -0.47
TRIM28-209ENST00000597423 CXCL2P19875 107 aa12.09□□□□□ -0.47
TRIM28-209ENST00000597423 EIF5AP63241 154 aaKnown RBP12.09□□□□□ -0.47
TRIM28-209ENST00000597423 ATP6V1FQ16864 119 aa12.09□□□□□ -0.47
TRIM28-209ENST00000597423 TUSC1Q2TAM9 212 aa12.09□□□□□ -0.47
TRIM28-209ENST00000597423 FBLN7Q53RD9 439 aa12.09□□□□□ -0.47
TRIM28-209ENST00000597423 C2orf83Q53S99 150 aa12.09□□□□□ -0.47
TRIM28-209ENST00000597423 C10orf55Q5SWW7 151 aa12.09□□□□□ -0.47
TRIM28-209ENST00000597423 OR10W1Q8NGF6 305 aa12.09□□□□□ -0.47
TRIM28-209ENST00000597423 OR1S2Q8NGQ3 325 aa12.09□□□□□ -0.47
TRIM28-209ENST00000597423 PINX1Q96BK5 328 aaKnown RBP12.09□□□□□ -0.47
TRIM28-209ENST00000597423 JMJD8Q96S16 334 aa12.09□□□□□ -0.47
TRIM28-209ENST00000597423 ARPC5LQ9BPX5 153 aa12.09□□□□□ -0.47
TRIM28-209ENST00000597423 CSMD1Q96PZ7 3565 aa12.08□□□□□ -0.48
TRIM28-209ENST00000597423 BORCS7-ASMTA0A0B4J1R7 106 aa12.08□□□□□ -0.48
TRIM28-209ENST00000597423 IGSF23A1L1A6 192 aa12.08□□□□□ -0.48
TRIM28-209ENST00000597423 RNF222A6NCQ9 220 aa12.08□□□□□ -0.48
TRIM28-209ENST00000597423 E7EUB6 86 aa12.08□□□□□ -0.48
TRIM28-209ENST00000597423 DFFBO76075 338 aa12.08□□□□□ -0.48
TRIM28-209ENST00000597423 METTL15P1P0C7V9 234 aa12.08□□□□□ -0.48
TRIM28-209ENST00000597423 WT1-ASQ06250 92 aa12.08□□□□□ -0.48
TRIM28-209ENST00000597423 C9orf152Q5JTZ5 239 aa12.08□□□□□ -0.48
TRIM28-209ENST00000597423 ETV3LQ6ZN32 361 aa12.08□□□□□ -0.48
TRIM28-209ENST00000597423 NPFFR1Q9GZQ6 430 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms