RNA–Protein interactions for RNA: ENST00000595758.5

LIG1-208, Transcript of DNA ligase 1, human

TSL 4

Gene LIG1, Length 606 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIG1-208	ENST00000595758	OR5B12	Q96R08	314 aa		11.16	□□□□□ -0.62
LIG1-208	ENST00000595758	SRSF8	Q9BRL6	282 aa	Known RBP	11.16	□□□□□ -0.62
LIG1-208	ENST00000595758	HINT2	Q9BX68	163 aa		11.16	□□□□□ -0.62
LIG1-208	ENST00000595758	GNB4	Q9HAV0	340 aa		11.16	□□□□□ -0.62
LIG1-208	ENST00000595758	NDUFA4L2	Q9NRX3	87 aa		11.16	□□□□□ -0.62
LIG1-208	ENST00000595758	TMEM14B	Q9NUH8	114 aa		11.16	□□□□□ -0.62
LIG1-208	ENST00000595758	ZNF257	Q9Y2Q1	563 aa		11.16	□□□□□ -0.62
LIG1-208	ENST00000595758		A0A0B4J293	547 aa		11.15	□□□□□ -0.62
LIG1-208	ENST00000595758		A0A0G2JLM5	398 aa		11.15	□□□□□ -0.62
LIG1-208	ENST00000595758	IGLC7	A0M8Q6	106 aa		11.15	□□□□□ -0.62
LIG1-208	ENST00000595758	DBX1	A6NMT0	343 aa		11.15	□□□□□ -0.62
LIG1-208	ENST00000595758	NPIPB5	A8MRT5	1133 aa		11.15	□□□□□ -0.62
LIG1-208	ENST00000595758	PF4	P02776	101 aa		11.15	□□□□□ -0.62
LIG1-208	ENST00000595758	PRH1	P02810	166 aa		11.15	□□□□□ -0.62
LIG1-208	ENST00000595758	CRYGC	P07315	174 aa		11.15	□□□□□ -0.62
LIG1-208	ENST00000595758	VAMP1	P23763	118 aa		11.15	□□□□□ -0.62
LIG1-208	ENST00000595758	MYCNOS	P40205	109 aa		11.15	□□□□□ -0.62
LIG1-208	ENST00000595758	SRPX	P78539	464 aa		11.15	□□□□□ -0.62
LIG1-208	ENST00000595758	FAM219A	Q8IW50	185 aa		11.15	□□□□□ -0.62
LIG1-208	ENST00000595758	OR10W1	Q8NGF6	305 aa		11.15	□□□□□ -0.62
LIG1-208	ENST00000595758	IL22RA2	Q969J5	263 aa		11.15	□□□□□ -0.62
LIG1-208	ENST00000595758	RAX2	Q96IS3	184 aa		11.15	□□□□□ -0.62
LIG1-208	ENST00000595758	PRR13	Q9NZ81	148 aa		11.15	□□□□□ -0.62
LIG1-208	ENST00000595758	FLVCR2	Q9UPI3	526 aa		11.15	□□□□□ -0.62
LIG1-208	ENST00000595758	C13orf42	A0A1B0GVH6	325 aa		11.14	□□□□□ -0.63
LIG1-208	ENST00000595758	CCL24	O00175	119 aa		11.14	□□□□□ -0.63
LIG1-208	ENST00000595758	UPK1B	O75841	260 aa		11.14	□□□□□ -0.63
LIG1-208	ENST00000595758	DHFR	P00374	187 aa		11.14	□□□□□ -0.63
LIG1-208	ENST00000595758	IGHV3-11	P01762	117 aa		11.14	□□□□□ -0.63
LIG1-208	ENST00000595758	REG1A	P05451	166 aa		11.14	□□□□□ -0.63
LIG1-208	ENST00000595758	OR13C7	P0DN81	318 aa		11.14	□□□□□ -0.63
LIG1-208	ENST00000595758	UBE2M	P61081	183 aa	Known RBP	11.14	□□□□□ -0.63
LIG1-208	ENST00000595758	HSPE1	P61604	102 aa	Known RBP	11.14	□□□□□ -0.63
LIG1-208	ENST00000595758	RUNX1	Q01196	453 aa		11.14	□□□□□ -0.63
LIG1-208	ENST00000595758	PPP1R1A	Q13522	171 aa		11.14	□□□□□ -0.63
LIG1-208	ENST00000595758	DEFB136	Q30KP8	78 aa		11.14	□□□□□ -0.63
LIG1-208	ENST00000595758	C19orf35	Q6ZS72	473 aa		11.14	□□□□□ -0.63
LIG1-208	ENST00000595758	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	11.14	□□□□□ -0.63
LIG1-208	ENST00000595758	LGI3	Q8N145	548 aa		11.14	□□□□□ -0.63
LIG1-208	ENST00000595758	USMG5	Q96IX5	58 aa		11.14	□□□□□ -0.63
LIG1-208	ENST00000595758	PIGBOS1	A0A0B4J2F0	54 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758		A0A0G2JRQ6	117 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758		I3L521	148 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	SFT2D2	O95562	160 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	LGALS1	P09382	135 aa	Known RBP	11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	DEFA4	P12838	97 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	CTRB1	P17538	263 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	MECP2	P51608	486 aa	Known RBP	11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	RHOG	P84095	191 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	WT1-AS	Q06250	92 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	ASAH1	Q13510	395 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	CTRB2	Q6GPI1	263 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	MZT2B	Q6NZ67	158 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	ETV3L	Q6ZN32	361 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758		Q6ZRM9	215 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	ZNF429	Q86V71	674 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	SLC35G3	Q8N808	338 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	NECAP1	Q8NC96	275 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	OR1N2	Q8NGR9	330 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	LSM10	Q969L4	123 aa	Known RBP	11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	DUX3	Q96PT4	197 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	P2RX4	Q99571	388 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	TBC1D24	Q9ULP9	559 aa		11.13	□□□□□ -0.63
LIG1-208	ENST00000595758	TRBV9	A0A0B4J1U6	114 aa		11.12	□□□□□ -0.63
LIG1-208	ENST00000595758		A0A0B4J2A0	478 aa		11.12	□□□□□ -0.63
LIG1-208	ENST00000595758	FAM223B	A6NKX1	122 aa		11.12	□□□□□ -0.63
LIG1-208	ENST00000595758	ST8SIA3	O43173	380 aa		11.12	□□□□□ -0.63
LIG1-208	ENST00000595758	RAB25	P57735	213 aa		11.12	□□□□□ -0.63
LIG1-208	ENST00000595758	DEFA5	Q01523	94 aa		11.12	□□□□□ -0.63
LIG1-208	ENST00000595758	ATP5G2	Q06055	141 aa		11.12	□□□□□ -0.63
LIG1-208	ENST00000595758	ANKRD55	Q3KP44	614 aa		11.12	□□□□□ -0.63
LIG1-208	ENST00000595758	LYZL2	Q7Z4W2	148 aa		11.12	□□□□□ -0.63
LIG1-208	ENST00000595758	FAM223A	Q8IWN6	122 aa		11.12	□□□□□ -0.63
LIG1-208	ENST00000595758	MRPL41	Q8IXM3	137 aa	Known RBP	11.12	□□□□□ -0.63
LIG1-208	ENST00000595758	OR11H1	Q8NG94	326 aa		11.12	□□□□□ -0.63
LIG1-208	ENST00000595758	GPR146	Q96CH1	333 aa		11.12	□□□□□ -0.63
LIG1-208	ENST00000595758	ALX4	Q9H161	411 aa	Predicted RBP	11.12	□□□□□ -0.63
LIG1-208	ENST00000595758	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	11.12	□□□□□ -0.63
LIG1-208	ENST00000595758	CACNG5	Q9UF02	275 aa		11.12	□□□□□ -0.63
LIG1-208	ENST00000595758	SHPK	Q9UHJ6	478 aa		11.12	□□□□□ -0.63
LIG1-208	ENST00000595758	NBEAL1	Q6ZS30	2694 aa		11.12	□□□□□ -0.63
LIG1-208	ENST00000595758	NOTCH3	Q9UM47	2321 aa		11.12	□□□□□ -0.63
LIG1-208	ENST00000595758	FAM240B	A0A1B0GVZ2	78 aa		11.11	□□□□□ -0.63
LIG1-208	ENST00000595758	OR2J3	O76001	311 aa		11.11	□□□□□ -0.63
LIG1-208	ENST00000595758	IFNA17	P01571	189 aa		11.11	□□□□□ -0.63
LIG1-208	ENST00000595758	TCRB	P04435	133 aa		11.11	□□□□□ -0.63
LIG1-208	ENST00000595758	HIST1H1B	P16401	226 aa	Known RBP	11.11	□□□□□ -0.63
LIG1-208	ENST00000595758	ANXA7	P20073	488 aa	Known RBP	11.11	□□□□□ -0.63
LIG1-208	ENST00000595758	CD33	P20138	364 aa		11.11	□□□□□ -0.63
LIG1-208	ENST00000595758	PRCD	Q00LT1	54 aa		11.11	□□□□□ -0.63
LIG1-208	ENST00000595758	IFITM3	Q01628	133 aa		11.11	□□□□□ -0.63
LIG1-208	ENST00000595758	LINC00482	Q8N8I6	264 aa		11.11	□□□□□ -0.63
LIG1-208	ENST00000595758	WFDC9	Q8NEX5	89 aa		11.11	□□□□□ -0.63
LIG1-208	ENST00000595758	DPF1	Q92782	380 aa		11.11	□□□□□ -0.63
LIG1-208	ENST00000595758	FANCD2OS	Q96PS1	177 aa		11.11	□□□□□ -0.63
LIG1-208	ENST00000595758	PDCD10	Q9BUL8	212 aa		11.11	□□□□□ -0.63
LIG1-208	ENST00000595758	C20orf85	Q9H1P6	137 aa		11.11	□□□□□ -0.63
LIG1-208	ENST00000595758	PLEKHA3	Q9HB20	300 aa		11.11	□□□□□ -0.63
LIG1-208	ENST00000595758	FBXL7	Q9UJT9	491 aa		11.11	□□□□□ -0.63
LIG1-208	ENST00000595758	C9orf170	A2RU37	121 aa		11.1	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms