RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 RPL18Q07020 188 aaKnown RBP0.8□□□□□ -2.28
SS18-214ENST00000580003 DMTNQ08495 405 aa0.8□□□□□ -2.28
SS18-214ENST00000580003 LINC00471Q8N535 108 aa0.8□□□□□ -2.28
SS18-214ENST00000580003 DNAJB3Q8WWF6 145 aa0.8□□□□□ -2.28
SS18-214ENST00000580003 OR51I2Q9H344 312 aa0.8□□□□□ -2.28
SS18-214ENST00000580003 RAD50Q92878 1312 aa0.8□□□□□ -2.28
SS18-214ENST00000580003 MED12LQ86YW9 2145 aa0.8□□□□□ -2.28
SS18-214ENST00000580003 FABP12A6NFH5 140 aa0.79□□□□□ -2.28
SS18-214ENST00000580003 F5H768 121 aa0.79□□□□□ -2.28
SS18-214ENST00000580003 REG1AP05451 166 aa0.79□□□□□ -2.28
SS18-214ENST00000580003 SUPT4H1P63272 117 aaKnown RBP0.79□□□□□ -2.28
SS18-214ENST00000580003 BATFQ16520 125 aa0.79□□□□□ -2.28
SS18-214ENST00000580003 TMEM161BQ8NDZ6 487 aa0.79□□□□□ -2.28
SS18-214ENST00000580003 WFDC11Q8NEX6 87 aa0.79□□□□□ -2.28
SS18-214ENST00000580003 C11orf40Q8WZ69 217 aa0.79□□□□□ -2.28
SS18-214ENST00000580003 C7orf50Q9BRJ6 194 aaKnown RBP0.79□□□□□ -2.28
SS18-214ENST00000580003 TTC21AQ8NDW8 1320 aa0.79□□□□□ -2.28
SS18-214ENST00000580003 SSNA1O43805 119 aa0.78□□□□□ -2.28
SS18-214ENST00000580003 KCNE1P15382 129 aa0.78□□□□□ -2.28
SS18-214ENST00000580003 CST9Q5W186 159 aa0.78□□□□□ -2.28
SS18-214ENST00000580003 KRTAP19-3Q7Z4W3 81 aa0.78□□□□□ -2.28
SS18-214ENST00000580003 C15orf41Q9Y2V0 281 aa0.78□□□□□ -2.28
SS18-214ENST00000580003 C1orf232A0A0U1RR37 186 aa0.77□□□□□ -2.29
SS18-214ENST00000580003 RPS4Y1P22090 263 aaKnown RBP0.77□□□□□ -2.29
SS18-214ENST00000580003 CD151P48509 253 aa0.77□□□□□ -2.29
SS18-214ENST00000580003 CAV1Q03135 178 aa0.77□□□□□ -2.29
SS18-214ENST00000580003 OR5F1O95221 314 aa0.76□□□□□ -2.29
SS18-214ENST00000580003 PSMB6P28072 239 aa0.76□□□□□ -2.29
SS18-214ENST00000580003 ZNF80P51504 273 aaPredicted RBP0.76□□□□□ -2.29
SS18-214ENST00000580003 CLEC6AQ6EIG7 209 aa0.76□□□□□ -2.29
SS18-214ENST00000580003 COMMD7Q86VX2 200 aa0.76□□□□□ -2.29
SS18-214ENST00000580003 LINC00526Q96FQ7 95 aa0.76□□□□□ -2.29
SS18-214ENST00000580003 OBSCN-AS1Q96MR7 158 aa0.76□□□□□ -2.29
SS18-214ENST00000580003 FAM96AQ9H5X1 160 aa0.76□□□□□ -2.29
SS18-214ENST00000580003 IL36BQ9NZH7 164 aa0.76□□□□□ -2.29
SS18-214ENST00000580003 HEATR5AQ86XA9 2040 aa0.76□□□□□ -2.29
SS18-214ENST00000580003 LOC110117498A0A087WWA1 95 aa0.75□□□□□ -2.29
SS18-214ENST00000580003 FABP5P3A8MUU1 101 aa0.75□□□□□ -2.29
SS18-214ENST00000580003 KRT7P08729 469 aa0.75□□□□□ -2.29
SS18-214ENST00000580003 RSU1Q15404 277 aa0.75□□□□□ -2.29
SS18-214ENST00000580003 GLT8D1Q68CQ7 371 aa0.75□□□□□ -2.29
SS18-214ENST00000580003 TMEM106AQ96A25 262 aa0.75□□□□□ -2.29
SS18-214ENST00000580003 EXPH5Q8NEV8 1989 aa0.75□□□□□ -2.29
SS18-214ENST00000580003 TYMSP04818 313 aa0.74□□□□□ -2.29
SS18-214ENST00000580003 BRS3P32247 399 aa0.74□□□□□ -2.29
SS18-214ENST00000580003 IBA57Q5T440 356 aaKnown RBP0.74□□□□□ -2.29
SS18-214ENST00000580003 MAP1LC3AQ9H492 121 aa0.74□□□□□ -2.29
SS18-214ENST00000580003 MUC5ACP98088 5654 aa0.74□□□□□ -2.29
SS18-214ENST00000580003 RP1P56715 2156 aa0.73□□□□□ -2.29
SS18-214ENST00000580003 GPR98Q8WXG9 6306 aa0.73□□□□□ -2.29
SS18-214ENST00000580003 PFDN6O15212 129 aa0.73□□□□□ -2.29
SS18-214ENST00000580003 CALUO43852 315 aaPredicted RBP0.73□□□□□ -2.29
SS18-214ENST00000580003 CLPSP04118 112 aa0.73□□□□□ -2.29
SS18-214ENST00000580003 STX5Q13190 355 aa0.73□□□□□ -2.29
SS18-214ENST00000580003 SYPL2Q5VXT5 272 aa0.73□□□□□ -2.29
SS18-214ENST00000580003 LCN15Q6UWW0 184 aa0.73□□□□□ -2.29
SS18-214ENST00000580003 PLEKHG7Q6ZR37 379 aa0.73□□□□□ -2.29
SS18-214ENST00000580003 ZNF550Q7Z398 422 aa0.73□□□□□ -2.29
SS18-214ENST00000580003 GPR32P1Q8NGA4 272 aa0.73□□□□□ -2.29
SS18-214ENST00000580003 CMTM5Q96DZ9 223 aa0.73□□□□□ -2.29
SS18-214ENST00000580003 DIRAS2Q96HU8 199 aa0.73□□□□□ -2.29
SS18-214ENST00000580003 EFCAB1Q9HAE3 211 aa0.73□□□□□ -2.29
SS18-214ENST00000580003 PLEKHJ1Q9NW61 149 aa0.73□□□□□ -2.29
SS18-214ENST00000580003 STRCQ7RTU9 1775 aa0.73□□□□□ -2.29
SS18-214ENST00000580003 PRM2P04554 102 aa0.72□□□□□ -2.29
SS18-214ENST00000580003 FAM228BP0C875 321 aa0.72□□□□□ -2.29
SS18-214ENST00000580003 ZNF93P35789 620 aaPredicted RBP0.72□□□□□ -2.29
SS18-214ENST00000580003 MAP2K4P45985 399 aa0.72□□□□□ -2.29
SS18-214ENST00000580003 UBE2G2P60604 165 aa0.72□□□□□ -2.29
SS18-214ENST00000580003 HDHD2Q9H0R4 259 aa0.72□□□□□ -2.29
SS18-214ENST00000580003 KLK9Q9UKQ9 250 aa0.72□□□□□ -2.29
SS18-214ENST00000580003 ZFP30Q9Y2G7 519 aa0.72□□□□□ -2.29
SS18-214ENST00000580003 GOLGA8KD6RF30 607 aa0.71□□□□□ -2.3
SS18-214ENST00000580003 C19orf84I3L1E1 186 aa0.7□□□□□ -2.3
SS18-214ENST00000580003 COCHO43405 550 aa0.7□□□□□ -2.3
SS18-214ENST00000580003 RPL12P30050 165 aaKnown RBP0.7□□□□□ -2.3
SS18-214ENST00000580003 MAP3K7CLP57077 242 aa0.7□□□□□ -2.3
SS18-214ENST00000580003 ZNF826PQ6ZT77 177 aa0.7□□□□□ -2.3
SS18-214ENST00000580003 C1orf158Q8N1D5 194 aa0.7□□□□□ -2.3
SS18-214ENST00000580003 OR4D11Q8NGI4 311 aa0.7□□□□□ -2.3
SS18-214ENST00000580003 TNRC6BQ9UPQ9 1833 aaKnown RBP0.7□□□□□ -2.3
SS18-214ENST00000580003 FADS1O60427 444 aa0.69□□□□□ -2.3
SS18-214ENST00000580003 RASSF5Q8WWW0 418 aa0.69□□□□□ -2.3
SS18-214ENST00000580003 CNBD2Q96M20 576 aa0.69□□□□□ -2.3
SS18-214ENST00000580003 SLC50A1Q9BRV3 221 aa0.69□□□□□ -2.3
SS18-214ENST00000580003 CKLFQ9UBR5 152 aa0.69□□□□□ -2.3
SS18-214ENST00000580003 ANAPC1Q9H1A4 1944 aa0.69□□□□□ -2.3
SS18-214ENST00000580003 LAMA4Q16363 1823 aa0.68□□□□□ -2.3
SS18-214ENST00000580003 FAM25EA8MYX2 175 aa0.68□□□□□ -2.3
SS18-214ENST00000580003 HYPMO75409 117 aa0.68□□□□□ -2.3
SS18-214ENST00000580003 SKP1P63208 163 aa0.68□□□□□ -2.3
SS18-214ENST00000580003 CCL20P78556 96 aa0.68□□□□□ -2.3
SS18-214ENST00000580003 C1orf195Q5TG92 126 aa0.68□□□□□ -2.3
SS18-214ENST00000580003 DEFB125Q8N687 156 aa0.68□□□□□ -2.3
SS18-214ENST00000580003 MCFD2Q8NI22 146 aa0.68□□□□□ -2.3
SS18-214ENST00000580003 IMP3Q9NV31 184 aaKnown RBP0.68□□□□□ -2.3
SS18-214ENST00000580003 TRBV20OR9-2A0A075B6H5 130 aa0.67□□□□□ -2.3
SS18-214ENST00000580003 HTR1AP08908 422 aa0.67□□□□□ -2.3
SS18-214ENST00000580003 UCHL3P15374 230 aa0.67□□□□□ -2.3
SS18-214ENST00000580003 MYL12AP19105 171 aa0.67□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms