RNA–Protein interactions for RNA: ENST00000576222.1

PCDHGB3-201, Transcript of protocadherin gamma subfamily B, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGB3, Length 4,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGB3-201ENST00000576222 C1orf147Q96MC9 270 aaPredicted RBP11.04□□□□□ -0.64
PCDHGB3-201ENST00000576222 OSTCQ9NRP0 149 aa11.04□□□□□ -0.64
PCDHGB3-201ENST00000576222 ELOVL5Q9NYP7 299 aa11.04□□□□□ -0.64
PCDHGB3-201ENST00000576222 CLEC1BQ9P126 229 aa11.04□□□□□ -0.64
PCDHGB3-201ENST00000576222 CRYABP02511 175 aaKnown RBP11.04□□□□□ -0.64
PCDHGB3-201ENST00000576222 DEFB109BQ30KR1 87 aa11.04□□□□□ -0.64
PCDHGB3-201ENST00000576222 OR10J3Q5JRS4 329 aa11.04□□□□□ -0.64
PCDHGB3-201ENST00000576222 DEPPQ9NTK1 212 aa11.04□□□□□ -0.64
PCDHGB3-201ENST00000576222 NCBP2LA6PVI3 153 aaKnown RBP11.04□□□□□ -0.64
PCDHGB3-201ENST00000576222 UMODP07911 640 aa11.04□□□□□ -0.64
PCDHGB3-201ENST00000576222 SMIM17P0DL12 118 aa11.04□□□□□ -0.64
PCDHGB3-201ENST00000576222 CKS2P33552 79 aa11.04□□□□□ -0.64
PCDHGB3-201ENST00000576222 GNB2P62879 340 aa11.04□□□□□ -0.64
PCDHGB3-201ENST00000576222 SRSF7Q16629 238 aaKnown RBP eCLIP11.04□□□□□ -0.64
PCDHGB3-201ENST00000576222 C5orf24Q7Z6I8 188 aa11.04□□□□□ -0.64
PCDHGB3-201ENST00000576222 THYN1Q9P016 225 aa11.04□□□□□ -0.64
PCDHGB3-201ENST00000576222 NRN1LQ496H8 165 aa11.04□□□□□ -0.64
PCDHGB3-201ENST00000576222 NPIPB3Q92617 1050 aa11.04□□□□□ -0.64
PCDHGB3-201ENST00000576222 DERL1Q9BUN8 251 aa11.04□□□□□ -0.64
PCDHGB3-201ENST00000576222 A1L4Q6 167 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 IL15RAQ13261 267 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 HCP5Q6MZN7 132 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 CDPF1Q6NVV7 123 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 UNQ5815/PRO19632Q6UWF5 114 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 NABP1Q96AH0 204 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 ARRDC1-AS1Q9H2J1 176 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 AKIRIN1Q9H9L7 192 aaPredicted RBP11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 F11RQ9Y624 299 aaKnown RBP11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 TCF20Q9UGU0 1960 aaKnown RBP11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 TMEM189A5PLL7 270 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 ATP5IP56385 69 aaPredicted RBP11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 C1orf174Q8IYL3 243 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 SCNM1Q9BWG6 230 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 CHODLQ9H9P2 273 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 POLR3KQ9Y2Y1 108 aaPredicted RBP11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 CACNA1EQ15878 2313 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 H3BTX0 84 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 IGKV1-5P01602 117 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 STAG3L2P0CL84 134 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 CSRP1P21291 193 aaKnown RBP11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 HOXA4Q00056 320 aaPredicted RBP11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 CCL13Q99616 98 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 LRRK1Q38SD2 2015 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 WIPF3A6NGB9 483 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 PRR19A6NJB7 356 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 IGHV3-48P01763 117 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 RPL27AP46776 148 aaKnown RBP11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 TMEM14EPQ6UXP3 125 aa11.03□□□□□ -0.64
PCDHGB3-201ENST00000576222 IGLV3-12A0A075B6K2 115 aa11.02□□□□□ -0.64
PCDHGB3-201ENST00000576222 KIR2DL2P43627 348 aaPredicted RBP11.02□□□□□ -0.64
PCDHGB3-201ENST00000576222 TMEM108Q6UXF1 575 aa11.02□□□□□ -0.64
PCDHGB3-201ENST00000576222 PEX7O00628 323 aa11.02□□□□□ -0.65
PCDHGB3-201ENST00000576222 RPL13AP40429 203 aaKnown RBP11.02□□□□□ -0.65
PCDHGB3-201ENST00000576222 OR13A1Q8NGR1 328 aa11.02□□□□□ -0.65
PCDHGB3-201ENST00000576222 LYPD6BQ8NI32 183 aa11.02□□□□□ -0.65
PCDHGB3-201ENST00000576222 INSIG2Q9Y5U4 225 aa11.02□□□□□ -0.65
PCDHGB3-201ENST00000576222 GVINP1Q7Z2Y8 2422 aa11.02□□□□□ -0.65
PCDHGB3-201ENST00000576222 J3QW42 95 aa11.02□□□□□ -0.65
PCDHGB3-201ENST00000576222 RBFOX2O43251 390 aaKnown RBP eCLIP11.02□□□□□ -0.65
PCDHGB3-201ENST00000576222 GATA2P23769 480 aaPredicted RBP11.02□□□□□ -0.65
PCDHGB3-201ENST00000576222 UBALD2Q8IYN6 164 aa11.02□□□□□ -0.65
PCDHGB3-201ENST00000576222 SIGLEC12Q96PQ1 595 aa11.02□□□□□ -0.65
PCDHGB3-201ENST00000576222 HIGD1CA8MV81 97 aa11.01□□□□□ -0.65
PCDHGB3-201ENST00000576222 RPL7P18124 248 aaKnown RBP11.01□□□□□ -0.65
PCDHGB3-201ENST00000576222 TWIST1Q15672 202 aa11.01□□□□□ -0.65
PCDHGB3-201ENST00000576222 FAM214BQ7L5A3 538 aa11.01□□□□□ -0.65
PCDHGB3-201ENST00000576222 DOCK8Q8NF50 2099 aa11.01□□□□□ -0.65
PCDHGB3-201ENST00000576222 DIDO1Q9BTC0 2240 aaKnown RBP11.01□□□□□ -0.65
PCDHGB3-201ENST00000576222 A0A0G2JRQ6 117 aa11.01□□□□□ -0.65
PCDHGB3-201ENST00000576222 FGFBP3Q8TAT2 258 aa11.01□□□□□ -0.65
PCDHGB3-201ENST00000576222 STAG3L3P0CL85 134 aa11.01□□□□□ -0.65
PCDHGB3-201ENST00000576222 ZIC4Q8N9L1 334 aa11.01□□□□□ -0.65
PCDHGB3-201ENST00000576222 C21orf140B9A014 251 aa11.01□□□□□ -0.65
PCDHGB3-201ENST00000576222 IFNL4K9M1U5 179 aa11.01□□□□□ -0.65
PCDHGB3-201ENST00000576222 KLF7O75840 302 aaPredicted RBP11.01□□□□□ -0.65
PCDHGB3-201ENST00000576222 ZNF497Q6ZNH5 498 aa11.01□□□□□ -0.65
PCDHGB3-201ENST00000576222 PNKDQ8N490 385 aa11.01□□□□□ -0.65
PCDHGB3-201ENST00000576222 SSBP4Q9BWG4 385 aaPredicted RBP11.01□□□□□ -0.65
PCDHGB3-201ENST00000576222 EFNB3Q15768 340 aa11□□□□□ -0.65
PCDHGB3-201ENST00000576222 ACP7Q6ZNF0 438 aa11□□□□□ -0.65
PCDHGB3-201ENST00000576222 ITLN1Q8WWA0 313 aa11□□□□□ -0.65
PCDHGB3-201ENST00000576222 C20orf144Q9BQM9 153 aa11□□□□□ -0.65
PCDHGB3-201ENST00000576222 DCTN5Q9BTE1 182 aa11□□□□□ -0.65
PCDHGB3-201ENST00000576222 HES7Q9BYE0 225 aa11□□□□□ -0.65
PCDHGB3-201ENST00000576222 IFI27L2Q9H2X8 130 aa11□□□□□ -0.65
PCDHGB3-201ENST00000576222 ONECUT1Q9UBC0 465 aa11□□□□□ -0.65
PCDHGB3-201ENST00000576222 SLC25A10Q9UBX3 287 aaPredicted RBP11□□□□□ -0.65
PCDHGB3-201ENST00000576222 RALYQ9UKM9 306 aaKnown RBP11□□□□□ -0.65
PCDHGB3-201ENST00000576222 PSMB2P49721 201 aa11□□□□□ -0.65
PCDHGB3-201ENST00000576222 Q6ZRM9 215 aa11□□□□□ -0.65
PCDHGB3-201ENST00000576222 TMEM136Q6ZRR5 245 aa11□□□□□ -0.65
PCDHGB3-201ENST00000576222 TMEM50AO95807 157 aa11□□□□□ -0.65
PCDHGB3-201ENST00000576222 GPR183P32249 361 aa11□□□□□ -0.65
PCDHGB3-201ENST00000576222 TMEM144Q7Z5S9 345 aa11□□□□□ -0.65
PCDHGB3-201ENST00000576222 IDI2-AS1Q9NZ38 188 aa11□□□□□ -0.65
PCDHGB3-201ENST00000576222 FAM157AC9JC47 383 aa11□□□□□ -0.65
PCDHGB3-201ENST00000576222 PPIHO43447 177 aaKnown RBP11□□□□□ -0.65
PCDHGB3-201ENST00000576222 LINC00305Q7Z4B0 112 aa11□□□□□ -0.65
PCDHGB3-201ENST00000576222 BMPERQ8N8U9 685 aa11□□□□□ -0.65
PCDHGB3-201ENST00000576222 SHANK1Q9Y566 2161 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms