RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 SIRT7Q9NRC8 400 aa16.46■□□□□ 0.23
CLN3-230ENST00000568076 ATRXP46100 2492 aa16.46■□□□□ 0.23
CLN3-230ENST00000568076 TMEM250H0YL14 139 aa16.46■□□□□ 0.22
CLN3-230ENST00000568076 OR5B3Q8NH48 314 aa16.46■□□□□ 0.22
CLN3-230ENST00000568076 FLYWCH2Q96CP2 140 aaKnown RBP16.46■□□□□ 0.22
CLN3-230ENST00000568076 CXorf65A6NEN9 183 aa16.45■□□□□ 0.22
CLN3-230ENST00000568076 ZNF137PP52743 207 aa16.45■□□□□ 0.22
CLN3-230ENST00000568076 TMEM249Q2WGJ8 235 aa16.45■□□□□ 0.22
CLN3-230ENST00000568076 BSXQ3C1V8 233 aa16.45■□□□□ 0.22
CLN3-230ENST00000568076 TEPPQ6URK8 271 aa16.45■□□□□ 0.22
CLN3-230ENST00000568076 OR4F5Q8NH21 305 aa16.45■□□□□ 0.22
CLN3-230ENST00000568076 OR9G1Q8NH87 305 aa16.45■□□□□ 0.22
CLN3-230ENST00000568076 FAM122AQ96E09 287 aa16.45■□□□□ 0.22
CLN3-230ENST00000568076 OR4F4Q96R69 305 aa16.45■□□□□ 0.22
CLN3-230ENST00000568076 SMIM7Q9BQ49 75 aa16.45■□□□□ 0.22
CLN3-230ENST00000568076 URGCP-MRPS24S4R325 110 aa16.45■□□□□ 0.22
CLN3-230ENST00000568076 A0A1W2PPV4 95 aa16.44■□□□□ 0.22
CLN3-230ENST00000568076 CXCL1P09341 107 aa16.44■□□□□ 0.22
CLN3-230ENST00000568076 ZNF674Q2M3X9 581 aa16.44■□□□□ 0.22
CLN3-230ENST00000568076 ZNF841Q6ZN19 808 aa16.44■□□□□ 0.22
CLN3-230ENST00000568076 OR10W1Q8NGF6 305 aa16.44■□□□□ 0.22
CLN3-230ENST00000568076 RPUSD4Q96CM3 377 aaKnown RBP16.44■□□□□ 0.22
CLN3-230ENST00000568076 FKBP11Q9NYL4 201 aa16.44■□□□□ 0.22
CLN3-230ENST00000568076 ANKHD1Q8IWZ3 2542 aaKnown RBP16.44■□□□□ 0.22
CLN3-230ENST00000568076 DLX1P56177 255 aa16.44■□□□□ 0.22
CLN3-230ENST00000568076 B2MP61769 119 aa16.44■□□□□ 0.22
CLN3-230ENST00000568076 MOB3BQ86TA1 216 aa16.44■□□□□ 0.22
CLN3-230ENST00000568076 PDPNQ86YL7 162 aa16.44■□□□□ 0.22
CLN3-230ENST00000568076 OR4C13Q8NGP0 309 aa16.44■□□□□ 0.22
CLN3-230ENST00000568076 TRBV23-1A0A0A0MS06 115 aa16.43■□□□□ 0.22
CLN3-230ENST00000568076 E7EUB6 86 aa16.43■□□□□ 0.22
CLN3-230ENST00000568076 IGLV2-23P01705 113 aa16.43■□□□□ 0.22
CLN3-230ENST00000568076 IGHV2-70P01814 119 aa16.43■□□□□ 0.22
CLN3-230ENST00000568076 IGFBP2P18065 325 aa16.43■□□□□ 0.22
CLN3-230ENST00000568076 C2orf83Q53S99 150 aa16.43■□□□□ 0.22
CLN3-230ENST00000568076 CYP2G1PQ6ZSU1 146 aa16.43■□□□□ 0.22
CLN3-230ENST00000568076 STPG3Q8N7X2 389 aa16.43■□□□□ 0.22
CLN3-230ENST00000568076 TMEM204Q9BSN7 226 aa16.43■□□□□ 0.22
CLN3-230ENST00000568076 TMEM133Q9H2Q1 129 aa16.43■□□□□ 0.22
CLN3-230ENST00000568076 PARLQ9H300 379 aa16.43■□□□□ 0.22
CLN3-230ENST00000568076 NDUFA4L2Q9NRX3 87 aa16.43■□□□□ 0.22
CLN3-230ENST00000568076 NAT8Q9UHE5 227 aa16.43■□□□□ 0.22
CLN3-230ENST00000568076 RALYQ9UKM9 306 aaKnown RBP16.43■□□□□ 0.22
CLN3-230ENST00000568076 FNDC10F2Z333 226 aa16.42■□□□□ 0.22
CLN3-230ENST00000568076 NDUFS6O75380 124 aaKnown RBP16.42■□□□□ 0.22
CLN3-230ENST00000568076 RNASE2P10153 161 aaKnown RBP16.42■□□□□ 0.22
CLN3-230ENST00000568076 NPPCP23582 126 aa16.42■□□□□ 0.22
CLN3-230ENST00000568076 SNRPEP62304 92 aaKnown RBP16.42■□□□□ 0.22
CLN3-230ENST00000568076 RPL8P62917 257 aaKnown RBP16.42■□□□□ 0.22
CLN3-230ENST00000568076 ABHD5Q8WTS1 349 aa16.42■□□□□ 0.22
CLN3-230ENST00000568076 PRELID1Q9Y255 219 aa16.42■□□□□ 0.22
CLN3-230ENST00000568076 TGIF2-C20orf24A0A0A6YYL0 155 aa16.42■□□□□ 0.22
CLN3-230ENST00000568076 STAG3L2P0CL84 134 aa16.42■□□□□ 0.22
CLN3-230ENST00000568076 STAG3L3P0CL85 134 aa16.42■□□□□ 0.22
CLN3-230ENST00000568076 TGIF2LXQ8IUE1 241 aa16.42■□□□□ 0.22
CLN3-230ENST00000568076 SSX3Q99909 188 aa16.42■□□□□ 0.22
CLN3-230ENST00000568076 LRBAP50851 2863 aa16.41■□□□□ 0.22
CLN3-230ENST00000568076 C11orf94C9JXX5 98 aa16.41■□□□□ 0.22
CLN3-230ENST00000568076 C1QTNF9P0C862 333 aa16.41■□□□□ 0.22
CLN3-230ENST00000568076 ARL14EPLP0DKL9 152 aa16.41■□□□□ 0.22
CLN3-230ENST00000568076 RPL29P47914 159 aaKnown RBP16.41■□□□□ 0.22
CLN3-230ENST00000568076 PRR20EP86478 221 aa16.41■□□□□ 0.22
CLN3-230ENST00000568076 PRR20CP86479 221 aa16.41■□□□□ 0.22
CLN3-230ENST00000568076 PRR20DP86480 221 aa16.41■□□□□ 0.22
CLN3-230ENST00000568076 PRR20BP86481 221 aa16.41■□□□□ 0.22
CLN3-230ENST00000568076 PRR20AP86496 221 aa16.41■□□□□ 0.22
CLN3-230ENST00000568076 PRB3Q04118 309 aaPredicted RBP16.41■□□□□ 0.22
CLN3-230ENST00000568076 TMEM241Q24JQ0 296 aa16.41■□□□□ 0.22
CLN3-230ENST00000568076 OR1L8Q8NGR8 309 aa16.41■□□□□ 0.22
CLN3-230ENST00000568076 TMEM167AQ8TBQ9 72 aa16.41■□□□□ 0.22
CLN3-230ENST00000568076 RITA1Q96K30 269 aa16.41■□□□□ 0.22
CLN3-230ENST00000568076 TMEM242Q9NWH2 141 aa16.41■□□□□ 0.22
CLN3-230ENST00000568076 WASHC3Q9Y3C0 194 aa16.41■□□□□ 0.22
CLN3-230ENST00000568076 IGKV1OR2-108A0A075B7D4 117 aa16.4■□□□□ 0.22
CLN3-230ENST00000568076 C5orf52A6NGY3 159 aa16.4■□□□□ 0.22
CLN3-230ENST00000568076 CGB1A6NKQ9 187 aa16.4■□□□□ 0.22
CLN3-230ENST00000568076 RPL35P42766 123 aaKnown RBP16.4■□□□□ 0.22
CLN3-230ENST00000568076 ATP5G3P48201 142 aa16.4■□□□□ 0.22
CLN3-230ENST00000568076 PPOXP50336 477 aa16.4■□□□□ 0.22
CLN3-230ENST00000568076 UBE2G2P60604 165 aa16.4■□□□□ 0.22
CLN3-230ENST00000568076 MLANAQ16655 118 aa16.4■□□□□ 0.22
CLN3-230ENST00000568076 SPNS3Q6ZMD2 512 aa16.4■□□□□ 0.22
CLN3-230ENST00000568076 C1QL4Q86Z23 238 aa16.4■□□□□ 0.22
CLN3-230ENST00000568076 NEIL1Q96FI4 390 aaPredicted RBP16.4■□□□□ 0.22
CLN3-230ENST00000568076 PCGF1Q9BSM1 259 aa16.4■□□□□ 0.22
CLN3-230ENST00000568076 COMMD5Q9GZQ3 224 aa16.4■□□□□ 0.22
CLN3-230ENST00000568076 SEPSECSQ9HD40 501 aaKnown RBP16.4■□□□□ 0.22
CLN3-230ENST00000568076 KCNIP2Q9NS61 270 aa16.4■□□□□ 0.22
CLN3-230ENST00000568076 DCHS2Q6V1P9 2916 aa16.4■□□□□ 0.22
CLN3-230ENST00000568076 FSTL3O95633 263 aa16.4■□□□□ 0.22
CLN3-230ENST00000568076 LINC00869P0C866 280 aa16.4■□□□□ 0.22
CLN3-230ENST00000568076 USF1P22415 310 aaPredicted RBP16.4■□□□□ 0.22
CLN3-230ENST00000568076 AKR1D1P51857 326 aa16.4■□□□□ 0.22
CLN3-230ENST00000568076 RPL23P62829 140 aaKnown RBP16.4■□□□□ 0.22
CLN3-230ENST00000568076 SPATA31B1PQ5VZV4 182 aa16.4■□□□□ 0.22
CLN3-230ENST00000568076 LINC00518Q8N0U6 118 aa16.4■□□□□ 0.22
CLN3-230ENST00000568076 IGHV2-26A0A0B4J1V2 119 aa16.39■□□□□ 0.21
CLN3-230ENST00000568076 RPS10P46783 165 aaKnown RBP16.39■□□□□ 0.21
CLN3-230ENST00000568076 RND2P52198 227 aa16.39■□□□□ 0.21
CLN3-230ENST00000568076 ATP5IP56385 69 aaPredicted RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms