RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 TRAPPC2BP0DI82 140 aa12.94□□□□□ -0.34
CLK3-207ENST00000562389 CTRB1P17538 263 aa12.94□□□□□ -0.34
CLK3-207ENST00000562389 AKR1C2P52895 323 aa12.94□□□□□ -0.34
CLK3-207ENST00000562389 ZNF616Q08AN1 781 aa12.94□□□□□ -0.34
CLK3-207ENST00000562389 RBMS2Q15434 407 aaKnown RBP12.94□□□□□ -0.34
CLK3-207ENST00000562389 KLK9Q2XQG4 91 aa12.94□□□□□ -0.34
CLK3-207ENST00000562389 CTRB2Q6GPI1 263 aa12.94□□□□□ -0.34
CLK3-207ENST00000562389 HSD17B13Q7Z5P4 300 aaPredicted RBP12.94□□□□□ -0.34
CLK3-207ENST00000562389 FAM223AQ8IWN6 122 aa12.94□□□□□ -0.34
CLK3-207ENST00000562389 OR4A16Q8NH70 328 aa12.94□□□□□ -0.34
CLK3-207ENST00000562389 CCDC32Q9BV29 185 aa12.94□□□□□ -0.34
CLK3-207ENST00000562389 ALX4Q9H161 411 aaPredicted RBP12.94□□□□□ -0.34
CLK3-207ENST00000562389 NDUFA4L2Q9NRX3 87 aa12.94□□□□□ -0.34
CLK3-207ENST00000562389 KLK9Q9UKQ9 250 aa12.94□□□□□ -0.34
CLK3-207ENST00000562389 KCNIP3Q9Y2W7 256 aa12.94□□□□□ -0.34
CLK3-207ENST00000562389 DBX1A6NMT0 343 aa12.93□□□□□ -0.34
CLK3-207ENST00000562389 DHFRP00374 187 aa12.93□□□□□ -0.34
CLK3-207ENST00000562389 PRH1P02810 166 aa12.93□□□□□ -0.34
CLK3-207ENST00000562389 OR8U8P0C7N1 319 aa12.93□□□□□ -0.34
CLK3-207ENST00000562389 AKR1C4P17516 323 aa12.93□□□□□ -0.34
CLK3-207ENST00000562389 TMEM187Q14656 261 aa12.93□□□□□ -0.34
CLK3-207ENST00000562389 SAMD5Q5TGI4 173 aa12.93□□□□□ -0.34
CLK3-207ENST00000562389 OR1N2Q8NGR9 330 aa12.93□□□□□ -0.34
CLK3-207ENST00000562389 LHFPL5Q8TAF8 219 aa12.93□□□□□ -0.34
CLK3-207ENST00000562389 RBPMSQ93062 196 aaKnown RBP12.93□□□□□ -0.34
CLK3-207ENST00000562389 LSM10Q969L4 123 aaKnown RBP12.93□□□□□ -0.34
CLK3-207ENST00000562389 RCC1LQ96I51 464 aaKnown RBP12.93□□□□□ -0.34
CLK3-207ENST00000562389 TMEM56Q96MV1 263 aa12.93□□□□□ -0.34
CLK3-207ENST00000562389 TMEM56-RWDD3S4R434 201 aa12.93□□□□□ -0.34
CLK3-207ENST00000562389 PKD1L1Q8TDX9 2849 aa12.93□□□□□ -0.34
CLK3-207ENST00000562389 CENPXA8MT69 81 aa12.92□□□□□ -0.34
CLK3-207ENST00000562389 RBMXL2O75526 392 aaKnown RBP12.92□□□□□ -0.34
CLK3-207ENST00000562389 REG1AP05451 166 aa12.92□□□□□ -0.34
CLK3-207ENST00000562389 SUPT4H1P63272 117 aaKnown RBP12.92□□□□□ -0.34
CLK3-207ENST00000562389 RHOGP84095 191 aa12.92□□□□□ -0.34
CLK3-207ENST00000562389 DEFA5Q01523 94 aa12.92□□□□□ -0.34
CLK3-207ENST00000562389 C19orf35Q6ZS72 473 aa12.92□□□□□ -0.34
CLK3-207ENST00000562389 TMED4Q7Z7H5 227 aa12.92□□□□□ -0.34
CLK3-207ENST00000562389 ZNF429Q86V71 674 aa12.92□□□□□ -0.34
CLK3-207ENST00000562389 FAM219AQ8IW50 185 aa12.92□□□□□ -0.34
CLK3-207ENST00000562389 SELENOHQ8IZQ5 122 aaKnown RBP12.92□□□□□ -0.34
CLK3-207ENST00000562389 NECAP1Q8NC96 275 aa12.92□□□□□ -0.34
CLK3-207ENST00000562389 OR10W1Q8NGF6 305 aa12.92□□□□□ -0.34
CLK3-207ENST00000562389 IL22RA2Q969J5 263 aa12.92□□□□□ -0.34
CLK3-207ENST00000562389 RRNAD1Q96FB5 475 aaKnown RBP12.92□□□□□ -0.34
CLK3-207ENST00000562389 A0A0G2JRQ6 117 aa12.91□□□□□ -0.34
CLK3-207ENST00000562389 LINC00854A0A1B0GVQ3 168 aa12.91□□□□□ -0.34
CLK3-207ENST00000562389 LINC01619G3V211 115 aa12.91□□□□□ -0.34
CLK3-207ENST00000562389 DUS4LO95620 317 aaKnown RBP12.91□□□□□ -0.34
CLK3-207ENST00000562389 HSPB1P04792 205 aaKnown RBP12.91□□□□□ -0.34
CLK3-207ENST00000562389 ANXA3P12429 323 aa12.91□□□□□ -0.34
CLK3-207ENST00000562389 HIST1H1BP16401 226 aaKnown RBP12.91□□□□□ -0.34
CLK3-207ENST00000562389 BTCP35070 178 aa12.91□□□□□ -0.34
CLK3-207ENST00000562389 CCR6P51684 374 aa12.91□□□□□ -0.34
CLK3-207ENST00000562389 WT1-ASQ06250 92 aa12.91□□□□□ -0.34
CLK3-207ENST00000562389 IZUMO4Q1ZYL8 232 aa12.91□□□□□ -0.34
CLK3-207ENST00000562389 TMEM128Q5BJH2 165 aa12.91□□□□□ -0.34
CLK3-207ENST00000562389 ZNF343Q6P1L6 599 aa12.91□□□□□ -0.34
CLK3-207ENST00000562389 RNASE11Q8TAA1 199 aaKnown RBP12.91□□□□□ -0.34
CLK3-207ENST00000562389 DPF1Q92782 380 aa12.91□□□□□ -0.34
CLK3-207ENST00000562389 FANCD2OSQ96PS1 177 aa12.91□□□□□ -0.34
CLK3-207ENST00000562389 IGLV11-55A0A075B6I3 123 aa12.9□□□□□ -0.34
CLK3-207ENST00000562389 IGHV4OR15-8A0A075B7B6 117 aa12.9□□□□□ -0.34
CLK3-207ENST00000562389 A0A087WW49 117 aa12.9□□□□□ -0.34
CLK3-207ENST00000562389 A0A0B4J293 547 aa12.9□□□□□ -0.34
CLK3-207ENST00000562389 G3V4G9 280 aa12.9□□□□□ -0.34
CLK3-207ENST00000562389 OR2J3O76001 311 aa12.9□□□□□ -0.34
CLK3-207ENST00000562389 NDUFB6O95139 128 aa12.9□□□□□ -0.34
CLK3-207ENST00000562389 DEFA4P12838 97 aa12.9□□□□□ -0.34
CLK3-207ENST00000562389 IGLL1P15814 213 aa12.9□□□□□ -0.34
CLK3-207ENST00000562389 RAB25P57735 213 aa12.9□□□□□ -0.34
CLK3-207ENST00000562389 HSPE1P61604 102 aaKnown RBP12.9□□□□□ -0.34
CLK3-207ENST00000562389 PRCDQ00LT1 54 aa12.9□□□□□ -0.34
CLK3-207ENST00000562389 ATP5G2Q06055 141 aa12.9□□□□□ -0.34
CLK3-207ENST00000562389 TMEM268Q5VZI3 342 aa12.9□□□□□ -0.34
CLK3-207ENST00000562389 CENPSQ8N2Z9 138 aa12.9□□□□□ -0.34
CLK3-207ENST00000562389 MCRIP2Q9BUT9 160 aaKnown RBP12.9□□□□□ -0.34
CLK3-207ENST00000562389 HINT2Q9BX68 163 aa12.9□□□□□ -0.34
CLK3-207ENST00000562389 WDR12Q9GZL7 423 aaKnown RBP12.9□□□□□ -0.34
CLK3-207ENST00000562389 RANGRFQ9HD47 186 aaPredicted RBP12.9□□□□□ -0.34
CLK3-207ENST00000562389 PLA2G10O15496 165 aa12.89□□□□□ -0.35
CLK3-207ENST00000562389 OR13C7P0DN81 318 aa12.89□□□□□ -0.35
CLK3-207ENST00000562389 UBE2MP61081 183 aaKnown RBP12.89□□□□□ -0.35
CLK3-207ENST00000562389 SRPXP78539 464 aa12.89□□□□□ -0.35
CLK3-207ENST00000562389 EXOSC2Q13868 293 aaKnown RBP12.89□□□□□ -0.35
CLK3-207ENST00000562389 C15orf32Q32M92 178 aa12.89□□□□□ -0.35
CLK3-207ENST00000562389 OXLD1Q5BKU9 147 aa12.89□□□□□ -0.35
CLK3-207ENST00000562389 FBXL7Q9UJT9 491 aa12.89□□□□□ -0.35
CLK3-207ENST00000562389 PIGBOS1A0A0B4J2F0 54 aa12.88□□□□□ -0.35
CLK3-207ENST00000562389 CYB5BO43169 146 aa12.88□□□□□ -0.35
CLK3-207ENST00000562389 ST8SIA3O43173 380 aa12.88□□□□□ -0.35
CLK3-207ENST00000562389 LYRM1O43325 122 aa12.88□□□□□ -0.35
CLK3-207ENST00000562389 MECP2P51608 486 aaKnown RBP12.88□□□□□ -0.35
CLK3-207ENST00000562389 ZNF846Q147U1 533 aa12.88□□□□□ -0.35
CLK3-207ENST00000562389 BEAN1Q3B7T3 259 aa12.88□□□□□ -0.35
CLK3-207ENST00000562389 AARDQ4LEZ3 155 aa12.88□□□□□ -0.35
CLK3-207ENST00000562389 FAM209BQ5JX69 171 aa12.88□□□□□ -0.35
CLK3-207ENST00000562389 KPRPQ5T749 579 aaPredicted RBP12.88□□□□□ -0.35
CLK3-207ENST00000562389 C1QL4Q86Z23 238 aa12.88□□□□□ -0.35
CLK3-207ENST00000562389 LGI3Q8N145 548 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms