RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 LRFN3Q9BTN0 628 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 NPVFQ9HCQ7 196 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 TRAPPC1Q9Y5R8 145 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 OR4A8P0C604 315 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 GCHFRP30047 84 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 SRP14P37108 136 aaKnown RBP10.56□□□□□ -0.72
LDLR-207ENST00000558013 TMEM144Q7Z5S9 345 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 OR10W1Q8NGF6 305 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 PPP1R35Q8TAP8 253 aa10.56□□□□□ -0.72
LDLR-207ENST00000558013 MBD3L4A6NDZ8 208 aaPredicted RBP10.55□□□□□ -0.72
LDLR-207ENST00000558013 MBD3L3A6NE82 208 aaPredicted RBP10.55□□□□□ -0.72
LDLR-207ENST00000558013 MBD3L5A6NJ08 208 aaPredicted RBP10.55□□□□□ -0.72
LDLR-207ENST00000558013 F6UZH7 168 aa10.55□□□□□ -0.72
LDLR-207ENST00000558013 TMPRSS2O15393 492 aa10.55□□□□□ -0.72
LDLR-207ENST00000558013 IGHV3-48P01763 117 aa10.55□□□□□ -0.72
LDLR-207ENST00000558013 CFHR2P36980 270 aa10.55□□□□□ -0.72
LDLR-207ENST00000558013 TMPRSS3P57727 454 aa10.55□□□□□ -0.72
LDLR-207ENST00000558013 PKIAP61925 76 aa10.55□□□□□ -0.72
LDLR-207ENST00000558013 COA6Q5JTJ3 125 aaKnown RBP10.55□□□□□ -0.72
LDLR-207ENST00000558013 TEPPQ6URK8 271 aa10.55□□□□□ -0.72
LDLR-207ENST00000558013 OR52E5Q8NH55 327 aa10.55□□□□□ -0.72
LDLR-207ENST00000558013 MBD3L2Q8NHZ7 208 aaPredicted RBP10.55□□□□□ -0.72
LDLR-207ENST00000558013 TMEM14BQ9NUH8 114 aa10.55□□□□□ -0.72
LDLR-207ENST00000558013 NBASA2RRP1 2371 aa10.55□□□□□ -0.72
LDLR-207ENST00000558013 GATCO43716 136 aaKnown RBP10.55□□□□□ -0.72
LDLR-207ENST00000558013 CXorf1O96002 111 aa10.55□□□□□ -0.72
LDLR-207ENST00000558013 IGHV1-46P01743 117 aa10.55□□□□□ -0.72
LDLR-207ENST00000558013 CBLN1P23435 193 aa10.55□□□□□ -0.72
LDLR-207ENST00000558013 GLRXP35754 106 aa10.55□□□□□ -0.72
LDLR-207ENST00000558013 REG1BP48304 166 aa10.55□□□□□ -0.72
LDLR-207ENST00000558013 HSPE1P61604 102 aaKnown RBP10.55□□□□□ -0.72
LDLR-207ENST00000558013 RPP30P78346 268 aaKnown RBP10.55□□□□□ -0.72
LDLR-207ENST00000558013 KCNIP4Q6PIL6 250 aa10.55□□□□□ -0.72
LDLR-207ENST00000558013 CISD2Q8N5K1 135 aaKnown RBP10.55□□□□□ -0.72
LDLR-207ENST00000558013 ELOVL5Q9NYP7 299 aa10.55□□□□□ -0.72
LDLR-207ENST00000558013 SPINK4O60575 86 aa10.54□□□□□ -0.72
LDLR-207ENST00000558013 MPDU1O75352 247 aa10.54□□□□□ -0.72
LDLR-207ENST00000558013 TYMSP04818 313 aa10.54□□□□□ -0.72
LDLR-207ENST00000558013 CNN1P51911 297 aaKnown RBP10.54□□□□□ -0.72
LDLR-207ENST00000558013 MRPL41Q8IXM3 137 aaKnown RBP10.54□□□□□ -0.72
LDLR-207ENST00000558013 GAFA1Q96PS6 74 aa10.54□□□□□ -0.72
LDLR-207ENST00000558013 OR51B2Q9Y5P1 312 aa10.54□□□□□ -0.72
LDLR-207ENST00000558013 RAI1Q7Z5J4 1906 aaPredicted RBP10.54□□□□□ -0.72
LDLR-207ENST00000558013 TLN1Q9Y490 2541 aaKnown RBP10.54□□□□□ -0.72
LDLR-207ENST00000558013 DVL1O14640 695 aa10.54□□□□□ -0.72
LDLR-207ENST00000558013 OR10J4P0C629 311 aa10.54□□□□□ -0.72
LDLR-207ENST00000558013 RNF224P0DH78 156 aa10.54□□□□□ -0.72
LDLR-207ENST00000558013 PDLIM4P50479 330 aa10.54□□□□□ -0.72
LDLR-207ENST00000558013 TNFAIP6P98066 277 aaPredicted RBP10.54□□□□□ -0.72
LDLR-207ENST00000558013 TIMM23BQ5SRD1 257 aa10.54□□□□□ -0.72
LDLR-207ENST00000558013 TEX38Q6PEX7 206 aa10.54□□□□□ -0.72
LDLR-207ENST00000558013 TUBG2Q9NRH3 451 aa10.54□□□□□ -0.72
LDLR-207ENST00000558013 TRGV10A0A0A0MS01 117 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 E7EUB6 86 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 TSTD3H0UI37 97 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 LINC00869P0C866 280 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 CT45A6P0DMU7 189 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 CT45A5P0DMU8 189 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 CT45A7P0DMV0 189 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 ADMP35318 185 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 RNASEH2CQ8TDP1 164 aaKnown RBP10.53□□□□□ -0.72
LDLR-207ENST00000558013 DYSFO75923 2080 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 MDFIC2A0A1B0GVS7 189 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 FAM90A9PA6NNJ1 464 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 J3QR06 171 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 MZT1Q08AG7 82 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 SSX2Q16385 188 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 ZNF439Q8NDP4 499 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 OR9G1Q8NH87 305 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 RNF7Q9UBF6 113 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 FCN3O75636 299 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 NDUFB7P17568 137 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 SLC35B1P78383 322 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 DIAPH2-AS1Q14236 149 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 PSG5Q15238 335 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 STUMQ69YW2 141 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 DMRTC2Q8IXT2 367 aaPredicted RBP10.53□□□□□ -0.72
LDLR-207ENST00000558013 ZADH2Q8N4Q0 377 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 OR5R1Q8NH85 324 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 ACY3Q96HD9 319 aa10.53□□□□□ -0.72
LDLR-207ENST00000558013 IGLV3-9A0A075B6K5 115 aa10.52□□□□□ -0.72
LDLR-207ENST00000558013 F2Z2F3 143 aa10.52□□□□□ -0.72
LDLR-207ENST00000558013 CCL3L1P16619 93 aa10.52□□□□□ -0.72
LDLR-207ENST00000558013 MORN5Q5VZ52 161 aa10.52□□□□□ -0.72
LDLR-207ENST00000558013 ENY2Q9NPA8 101 aa10.52□□□□□ -0.72
LDLR-207ENST00000558013 FOXA2Q9Y261 457 aaPredicted RBP10.52□□□□□ -0.72
LDLR-207ENST00000558013 SPTA1P02549 2419 aa10.52□□□□□ -0.73
LDLR-207ENST00000558013 TRGV8A0A0C4DH27 118 aa10.52□□□□□ -0.73
LDLR-207ENST00000558013 CRYBB3P26998 211 aa10.52□□□□□ -0.73
LDLR-207ENST00000558013 TMEM249Q2WGJ8 235 aa10.52□□□□□ -0.73
LDLR-207ENST00000558013 ZNF600Q6ZNG1 722 aa10.52□□□□□ -0.73
LDLR-207ENST00000558013 GBGT1Q8N5D6 347 aa10.52□□□□□ -0.73
LDLR-207ENST00000558013 OR10G8Q8NGN5 311 aa10.52□□□□□ -0.73
LDLR-207ENST00000558013 ZNF503Q96F45 646 aa10.52□□□□□ -0.73
LDLR-207ENST00000558013 SH3BGRL2Q9UJC5 107 aa10.52□□□□□ -0.73
LDLR-207ENST00000558013 TANC2Q9HCD6 1990 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 A8MWP6 167 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 TM4SF5O14894 197 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 RAB7AP51149 207 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 LCN2P80188 198 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms