RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 RBPMSQ93062 196 aaKnown RBP11.14□□□□□ -0.63
USP3-205ENST00000557884 RRNAD1Q96FB5 475 aaKnown RBP11.14□□□□□ -0.63
USP3-205ENST00000557884 GALNT14Q96FL9 552 aa11.14□□□□□ -0.63
USP3-205ENST00000557884 ALX4Q9H161 411 aaPredicted RBP11.14□□□□□ -0.63
USP3-205ENST00000557884 SLA2Q9H6Q3 261 aa11.14□□□□□ -0.63
USP3-205ENST00000557884 TMEM14BQ9NUH8 114 aa11.14□□□□□ -0.63
USP3-205ENST00000557884 A0A0B4J293 547 aa11.13□□□□□ -0.63
USP3-205ENST00000557884 IGLC7A0M8Q6 106 aa11.13□□□□□ -0.63
USP3-205ENST00000557884 H3BUA1 57 aa11.13□□□□□ -0.63
USP3-205ENST00000557884 ANXA3P12429 323 aa11.13□□□□□ -0.63
USP3-205ENST00000557884 VAMP1P23763 118 aa11.13□□□□□ -0.63
USP3-205ENST00000557884 PPP1R1AQ13522 171 aa11.13□□□□□ -0.63
USP3-205ENST00000557884 TMEM128Q5BJH2 165 aa11.13□□□□□ -0.63
USP3-205ENST00000557884 SLC25A42Q86VD7 318 aa11.13□□□□□ -0.63
USP3-205ENST00000557884 TTC9CQ8N5M4 171 aa11.13□□□□□ -0.63
USP3-205ENST00000557884 C4orf3Q8WVX3 66 aa11.13□□□□□ -0.63
USP3-205ENST00000557884 RAX2Q96IS3 184 aa11.13□□□□□ -0.63
USP3-205ENST00000557884 UBE2E2Q96LR5 201 aa11.13□□□□□ -0.63
USP3-205ENST00000557884 TMEM56Q96MV1 263 aa11.13□□□□□ -0.63
USP3-205ENST00000557884 TMEM56-RWDD3S4R434 201 aa11.13□□□□□ -0.63
USP3-205ENST00000557884 TNCP24821 2201 aa11.13□□□□□ -0.63
USP3-205ENST00000557884 C13orf42A0A1B0GVH6 325 aa11.12□□□□□ -0.63
USP3-205ENST00000557884 NPIPB5A8MRT5 1133 aa11.12□□□□□ -0.63
USP3-205ENST00000557884 CCL24O00175 119 aa11.12□□□□□ -0.63
USP3-205ENST00000557884 UPK1BO75841 260 aa11.12□□□□□ -0.63
USP3-205ENST00000557884 FGF2P09038 288 aa11.12□□□□□ -0.63
USP3-205ENST00000557884 OR13C7P0DN81 318 aa11.12□□□□□ -0.63
USP3-205ENST00000557884 ANXA7P20073 488 aaKnown RBP11.12□□□□□ -0.63
USP3-205ENST00000557884 PSMB6P28072 239 aa11.12□□□□□ -0.63
USP3-205ENST00000557884 MECP2P51608 486 aaKnown RBP11.12□□□□□ -0.63
USP3-205ENST00000557884 RAB25P57735 213 aa11.12□□□□□ -0.63
USP3-205ENST00000557884 RHOGP84095 191 aa11.12□□□□□ -0.63
USP3-205ENST00000557884 SPINK9Q5DT21 86 aa11.12□□□□□ -0.63
USP3-205ENST00000557884 SLC35G3Q8N808 338 aa11.12□□□□□ -0.63
USP3-205ENST00000557884 NDUFA4L2Q9NRX3 87 aa11.12□□□□□ -0.63
USP3-205ENST00000557884 FKBP11Q9NYL4 201 aa11.12□□□□□ -0.63
USP3-205ENST00000557884 TBC1D24Q9ULP9 559 aa11.12□□□□□ -0.63
USP3-205ENST00000557884 ZNF257Q9Y2Q1 563 aa11.12□□□□□ -0.63
USP3-205ENST00000557884 I3L521 148 aa11.11□□□□□ -0.63
USP3-205ENST00000557884 OR2J3O76001 311 aa11.11□□□□□ -0.63
USP3-205ENST00000557884 DEFA4P12838 97 aa11.11□□□□□ -0.63
USP3-205ENST00000557884 CTRB1P17538 263 aa11.11□□□□□ -0.63
USP3-205ENST00000557884 SLC6A1P30531 599 aa11.11□□□□□ -0.63
USP3-205ENST00000557884 WT1-ASQ06250 92 aa11.11□□□□□ -0.63
USP3-205ENST00000557884 ANKRD55Q3KP44 614 aa11.11□□□□□ -0.63
USP3-205ENST00000557884 CTRB2Q6GPI1 263 aa11.11□□□□□ -0.63
USP3-205ENST00000557884 Q6ZRM9 215 aa11.11□□□□□ -0.63
USP3-205ENST00000557884 LYZL2Q7Z4W2 148 aa11.11□□□□□ -0.63
USP3-205ENST00000557884 LGI3Q8N145 548 aa11.11□□□□□ -0.63
USP3-205ENST00000557884 OR11H1Q8NG94 326 aa11.11□□□□□ -0.63
USP3-205ENST00000557884 OR5B3Q8NH48 314 aa11.11□□□□□ -0.63
USP3-205ENST00000557884 GPR146Q96CH1 333 aa11.11□□□□□ -0.63
USP3-205ENST00000557884 ST8SIA3O43173 380 aa11.1□□□□□ -0.63
USP3-205ENST00000557884 SFT2D2O95562 160 aa11.1□□□□□ -0.63
USP3-205ENST00000557884 CRYGCP07315 174 aa11.1□□□□□ -0.63
USP3-205ENST00000557884 LGALS1P09382 135 aaKnown RBP11.1□□□□□ -0.63
USP3-205ENST00000557884 MYCNOSP40205 109 aa11.1□□□□□ -0.63
USP3-205ENST00000557884 HSPE1P61604 102 aaKnown RBP11.1□□□□□ -0.63
USP3-205ENST00000557884 SRPXP78539 464 aa11.1□□□□□ -0.63
USP3-205ENST00000557884 IFITM3Q01628 133 aa11.1□□□□□ -0.63
USP3-205ENST00000557884 MRPL41Q8IXM3 137 aaKnown RBP11.1□□□□□ -0.63
USP3-205ENST00000557884 LINC00482Q8N8I6 264 aa11.1□□□□□ -0.63
USP3-205ENST00000557884 OR1N2Q8NGR9 330 aa11.1□□□□□ -0.63
USP3-205ENST00000557884 IL22RA2Q969J5 263 aa11.1□□□□□ -0.63
USP3-205ENST00000557884 LSM10Q969L4 123 aaKnown RBP11.1□□□□□ -0.63
USP3-205ENST00000557884 SRSF8Q9BRL6 282 aaKnown RBP11.1□□□□□ -0.63
USP3-205ENST00000557884 C20orf85Q9H1P6 137 aa11.1□□□□□ -0.63
USP3-205ENST00000557884 CACNG5Q9UF02 275 aa11.1□□□□□ -0.63
USP3-205ENST00000557884 TRAV6A0A075B6T7 132 aa11.09□□□□□ -0.63
USP3-205ENST00000557884 TRBV9A0A0B4J1U6 114 aa11.09□□□□□ -0.63
USP3-205ENST00000557884 A0A0G2JLM5 398 aa11.09□□□□□ -0.63
USP3-205ENST00000557884 FAM240BA0A1B0GVZ2 78 aa11.09□□□□□ -0.63
USP3-205ENST00000557884 BRI3O95415 125 aa11.09□□□□□ -0.63
USP3-205ENST00000557884 DHFRP00374 187 aa11.09□□□□□ -0.63
USP3-205ENST00000557884 IFNA17P01571 189 aa11.09□□□□□ -0.63
USP3-205ENST00000557884 CD33P20138 364 aa11.09□□□□□ -0.63
USP3-205ENST00000557884 PRCDQ00LT1 54 aa11.09□□□□□ -0.63
USP3-205ENST00000557884 RUNX1Q01196 453 aa11.09□□□□□ -0.63
USP3-205ENST00000557884 ATP5G2Q06055 141 aa11.09□□□□□ -0.63
USP3-205ENST00000557884 ASAH1Q13510 395 aa11.09□□□□□ -0.63
USP3-205ENST00000557884 THOC7Q6I9Y2 204 aaKnown RBP11.09□□□□□ -0.63
USP3-205ENST00000557884 MZT2BQ6NZ67 158 aa11.09□□□□□ -0.63
USP3-205ENST00000557884 FAM219AQ8IW50 185 aa11.09□□□□□ -0.63
USP3-205ENST00000557884 DPF1Q92782 380 aa11.09□□□□□ -0.63
USP3-205ENST00000557884 FANCD2OSQ96PS1 177 aa11.09□□□□□ -0.63
USP3-205ENST00000557884 P2RX4Q99571 388 aa11.09□□□□□ -0.63
USP3-205ENST00000557884 FBXL7Q9UJT9 491 aa11.09□□□□□ -0.63
USP3-205ENST00000557884 IGHV4OR15-8A0A075B7B6 117 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 A0A087WW49 117 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 A0A0B4J2A0 478 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 C9orf170A2RU37 121 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 ANKRD34BA5PLL1 514 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 FAM223BA6NKX1 122 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 NXPH3O95157 252 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 NDUFB8O95169 186 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 HLA-AP01891 365 aaKnown RBP11.08□□□□□ -0.64
USP3-205ENST00000557884 TCRBP04435 133 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 OR4E1P0C645 316 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 UBE2MP61081 183 aaKnown RBP11.08□□□□□ -0.64
USP3-205ENST00000557884 DHRS2Q13268 280 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms