RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 RND3P61587 244 aa8.85□□□□□ -0.99
CCDC88C-208ENST00000554165 MRPS10P82664 201 aaKnown RBP8.85□□□□□ -0.99
CCDC88C-208ENST00000554165 WT1-ASQ06250 92 aa8.85□□□□□ -0.99
CCDC88C-208ENST00000554165 SLC25A42Q86VD7 318 aa8.85□□□□□ -0.99
CCDC88C-208ENST00000554165 FAM223AQ8IWN6 122 aa8.85□□□□□ -0.99
CCDC88C-208ENST00000554165 CCDC140Q96MF4 163 aa8.85□□□□□ -0.99
CCDC88C-208ENST00000554165 RSL24D1Q9UHA3 163 aaKnown RBP8.85□□□□□ -0.99
CCDC88C-208ENST00000554165 COL7A1Q02388 2944 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 IGLV11-55A0A075B6I3 123 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 IGHV3-21A0A0B4J1V1 117 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 ANKRD20A5PA0PJZ0 165 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 OR2C1O95371 312 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 LY86O95711 162 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 SERPINE2P07093 398 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 AKAIN1P0CW23 69 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 DEFA4P12838 97 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 SPNP16150 400 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 S100GP29377 79 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 SSBP1Q04837 148 aaKnown RBP8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 RPEL1Q2QD12 228 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 SPINK9Q5DT21 86 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 ZNF429Q86V71 674 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 OR51S1Q8NGJ8 323 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 OR1L8Q8NGR8 309 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 RTBDNQ9BSG5 229 aaPredicted RBP8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 ZC4H2Q9NQZ6 224 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 NDUFA4L2Q9NRX3 87 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 SELENOKQ9Y6D0 94 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 V9GYH0 126 aa8.84□□□□□ -0.99
CCDC88C-208ENST00000554165 C3orf85A0A1B0GTC6 90 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 H0Y980 276 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 SNAPC5O75971 98 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 CTSDP07339 412 aaPredicted RBP8.83□□□□□ -1
CCDC88C-208ENST00000554165 CSN3P07498 182 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 PTBP1P26599 531 aaKnown RBP eCLIP8.83□□□□□ -1
CCDC88C-208ENST00000554165 INSL3P51460 131 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 MEF2DQ14814 521 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 ZNF79Q15937 498 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 KLK9Q2XQG4 91 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 PYDC2Q56P42 97 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 CLEC19AQ6UXS0 136 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 ADAMTSL5Q6ZMM2 481 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 H2BFWTQ7Z2G1 175 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 OR9G4Q8NGQ1 327 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 ZFAND1Q8TCF1 268 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 ZNF486Q96H40 463 aaPredicted RBP8.83□□□□□ -1
CCDC88C-208ENST00000554165 OR4C12Q96R67 309 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 THAP7Q9BT49 309 aaPredicted RBP8.83□□□□□ -1
CCDC88C-208ENST00000554165 C5orf66Q9H5L9 145 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 TMEM14BQ9NUH8 114 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 PRR13Q9NZ81 148 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 COPZ2Q9P299 210 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 KLK9Q9UKQ9 250 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 ZNF256Q9Y2P7 627 aaPredicted RBP8.83□□□□□ -1
CCDC88C-208ENST00000554165 LSM4Q9Y4Z0 139 aaKnown RBP8.83□□□□□ -1
CCDC88C-208ENST00000554165 DNAH9Q9NYC9 4486 aa8.83□□□□□ -1
CCDC88C-208ENST00000554165 A0A0B4J293 547 aa8.82□□□□□ -1
CCDC88C-208ENST00000554165 A0A0G2JRQ6 117 aa8.82□□□□□ -1
CCDC88C-208ENST00000554165 C15orf61A6NNL5 157 aa8.82□□□□□ -1
CCDC88C-208ENST00000554165 DISC1C4P0D8 188 aa8.82□□□□□ -1
CCDC88C-208ENST00000554165 P0C879 139 aa8.82□□□□□ -1
CCDC88C-208ENST00000554165 CCDC190Q86UF4 302 aa8.82□□□□□ -1
CCDC88C-208ENST00000554165 GDPD1Q8N9F7 314 aa8.82□□□□□ -1
CCDC88C-208ENST00000554165 LHFPL5Q8TAF8 219 aa8.82□□□□□ -1
CCDC88C-208ENST00000554165 TRIM63Q969Q1 353 aa8.82□□□□□ -1
CCDC88C-208ENST00000554165 FAM212BQ9NTI7 297 aaPredicted RBP8.82□□□□□ -1
CCDC88C-208ENST00000554165 PRNDQ9UKY0 176 aa8.82□□□□□ -1
CCDC88C-208ENST00000554165 IGHV3-35A0A0C4DH35 117 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 IZUMO1RA6ND01 250 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 IGLV1-51P01701 117 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 CLEC3BP05452 202 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 FGF2P09038 288 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 OR5AC1P0C628 307 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 ARL3P36405 182 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 KLF9Q13886 244 aaPredicted RBP8.81□□□□□ -1
CCDC88C-208ENST00000554165 TRIM16LQ309B1 348 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 C11orf87Q6NUJ2 197 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 SLC25A24Q6NUK1 477 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 Q6ZRM9 215 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 CADM3Q8N126 398 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 OR4A16Q8NH70 328 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 ZNF502Q8TBZ5 544 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 LSM10Q969L4 123 aaKnown RBP8.81□□□□□ -1
CCDC88C-208ENST00000554165 TMEM230Q96A57 120 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 EEF1AKMT3Q96AZ1 226 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 SRSF8Q9BRL6 282 aaKnown RBP8.81□□□□□ -1
CCDC88C-208ENST00000554165 ELOVL1Q9BW60 279 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 MCUBQ9NWR8 336 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 RABL2AQ9UBK7 228 aaPredicted RBP8.81□□□□□ -1
CCDC88C-208ENST00000554165 RABL2BQ9UNT1 228 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 GPR132Q9UNW8 380 aa8.81□□□□□ -1
CCDC88C-208ENST00000554165 TEX13DA0A0J9YY54 714 aaPredicted RBP8.8□□□□□ -1
CCDC88C-208ENST00000554165 ZNF701M0R085 212 aaPredicted RBP8.8□□□□□ -1
CCDC88C-208ENST00000554165 DHFRP00374 187 aa8.8□□□□□ -1
CCDC88C-208ENST00000554165 HIST1H1BP16401 226 aaKnown RBP8.8□□□□□ -1
CCDC88C-208ENST00000554165 UCP1P25874 307 aa8.8□□□□□ -1
CCDC88C-208ENST00000554165 GPR183P32249 361 aa8.8□□□□□ -1
CCDC88C-208ENST00000554165 MECP2P51608 486 aaKnown RBP8.8□□□□□ -1
CCDC88C-208ENST00000554165 Q8N402 240 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms