RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 C22orf34Q6ZV56 151 aa12.97□□□□□ -0.33
LDLR-204ENST00000545707 FAM216AQ8WUB2 273 aa12.97□□□□□ -0.33
LDLR-204ENST00000545707 LHBP01229 141 aa12.96□□□□□ -0.33
LDLR-204ENST00000545707 IGKV1-16P04430 117 aa12.96□□□□□ -0.33
LDLR-204ENST00000545707 KLF3P57682 345 aaPredicted RBP12.96□□□□□ -0.33
LDLR-204ENST00000545707 ZNF90Q03938 601 aa12.96□□□□□ -0.33
LDLR-204ENST00000545707 ADGRG4Q8IZF6 3080 aa12.96□□□□□ -0.33
LDLR-204ENST00000545707 CCL13Q99616 98 aa12.96□□□□□ -0.33
LDLR-204ENST00000545707 LRFN3Q9BTN0 628 aa12.96□□□□□ -0.33
LDLR-204ENST00000545707 TMEM14BQ9NUH8 114 aa12.96□□□□□ -0.33
LDLR-204ENST00000545707 KBTBD11-OT1A0A1B0GTJ5 212 aa12.96□□□□□ -0.34
LDLR-204ENST00000545707 RHOBP62745 196 aa12.96□□□□□ -0.34
LDLR-204ENST00000545707 ENY2Q9NPA8 101 aa12.96□□□□□ -0.34
LDLR-204ENST00000545707 FKBP11Q9NYL4 201 aa12.96□□□□□ -0.34
LDLR-204ENST00000545707 OR51B2Q9Y5P1 312 aa12.96□□□□□ -0.34
LDLR-204ENST00000545707 TRGV8A0A0C4DH27 118 aa12.95□□□□□ -0.34
LDLR-204ENST00000545707 SRRM4A7MD48 611 aaKnown RBP12.95□□□□□ -0.34
LDLR-204ENST00000545707 SPINK4O60575 86 aa12.95□□□□□ -0.34
LDLR-204ENST00000545707 IGFL2Q6UWQ7 119 aa12.95□□□□□ -0.34
LDLR-204ENST00000545707 FAM216BQ8N7L0 139 aa12.95□□□□□ -0.34
LDLR-204ENST00000545707 ZCCHC14Q8WYQ9 949 aaKnown RBP12.95□□□□□ -0.34
LDLR-204ENST00000545707 ARFGEF3Q5TH69 2177 aa12.94□□□□□ -0.34
LDLR-204ENST00000545707 LINC00869P0C866 280 aa12.94□□□□□ -0.34
LDLR-204ENST00000545707 CFHR2P36980 270 aa12.94□□□□□ -0.34
LDLR-204ENST00000545707 RND1Q92730 232 aa12.94□□□□□ -0.34
LDLR-204ENST00000545707 TP53TG3Q9ULZ0 132 aa12.94□□□□□ -0.34
LDLR-204ENST00000545707 IGKV1OR2-108A0A075B7D4 117 aa12.94□□□□□ -0.34
LDLR-204ENST00000545707 CCKARP32238 428 aa12.94□□□□□ -0.34
LDLR-204ENST00000545707 PSG5Q15238 335 aa12.94□□□□□ -0.34
LDLR-204ENST00000545707 NOL4LQ96MY1 436 aaPredicted RBP12.94□□□□□ -0.34
LDLR-204ENST00000545707 NDUFAF3Q9BU61 184 aa12.94□□□□□ -0.34
LDLR-204ENST00000545707 ASCL3Q9NQ33 180 aa12.94□□□□□ -0.34
LDLR-204ENST00000545707 FOXA2Q9Y261 457 aaPredicted RBP12.94□□□□□ -0.34
LDLR-204ENST00000545707 YLPM1P49750 1951 aaKnown RBP12.94□□□□□ -0.34
LDLR-204ENST00000545707 F2Z2F3 143 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 J3QR06 171 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 KIR2DS2P43631 304 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 RAB7AP51149 207 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 ASPHD1Q5U4P2 390 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 MS4A10Q96PG2 267 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 GCM1Q9NP62 436 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 TP53TG5Q9Y2B4 290 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 TRGV10A0A0A0MS01 117 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 EREGO14944 169 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 FTH1P19P0C7X4 201 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 CRYBB3P26998 211 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 RPL29P47914 159 aaKnown RBP12.93□□□□□ -0.34
LDLR-204ENST00000545707 PRR20EP86478 221 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 PRR20CP86479 221 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 PRR20DP86480 221 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 PRR20BP86481 221 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 PRR20AP86496 221 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 IQCJQ1A5X6 159 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 KRTCAP3Q53RY4 240 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 ATMQ13315 3056 aa12.93□□□□□ -0.34
LDLR-204ENST00000545707 OR10J4P0C629 311 aa12.92□□□□□ -0.34
LDLR-204ENST00000545707 IER3P46695 156 aa12.92□□□□□ -0.34
LDLR-204ENST00000545707 LINC00310P59036 64 aa12.92□□□□□ -0.34
LDLR-204ENST00000545707 SLC35B1P78383 322 aa12.92□□□□□ -0.34
LDLR-204ENST00000545707 RAB31Q13636 194 aa12.92□□□□□ -0.34
LDLR-204ENST00000545707 OR10W1Q8NGF6 305 aa12.92□□□□□ -0.34
LDLR-204ENST00000545707 EAF1Q96JC9 268 aaPredicted RBP12.92□□□□□ -0.34
LDLR-204ENST00000545707 NABP2Q9BQ15 211 aa12.92□□□□□ -0.34
LDLR-204ENST00000545707 TXNDC17Q9BRA2 123 aa12.92□□□□□ -0.34
LDLR-204ENST00000545707 IL36BQ9NZH7 164 aa12.92□□□□□ -0.34
LDLR-204ENST00000545707 POLR3KQ9Y2Y1 108 aaPredicted RBP12.92□□□□□ -0.34
LDLR-204ENST00000545707 CT45A6P0DMU7 189 aa12.92□□□□□ -0.34
LDLR-204ENST00000545707 CT45A5P0DMU8 189 aa12.92□□□□□ -0.34
LDLR-204ENST00000545707 CT45A7P0DMV0 189 aa12.92□□□□□ -0.34
LDLR-204ENST00000545707 GLRXP35754 106 aa12.92□□□□□ -0.34
LDLR-204ENST00000545707 ERVFC1-1P60608 527 aa12.92□□□□□ -0.34
LDLR-204ENST00000545707 YPEL3P61236 119 aaPredicted RBP12.92□□□□□ -0.34
LDLR-204ENST00000545707 DOLPP1Q86YN1 238 aa12.92□□□□□ -0.34
LDLR-204ENST00000545707 ZCCHC24Q8N2G6 241 aaKnown RBP12.92□□□□□ -0.34
LDLR-204ENST00000545707 ZNF439Q8NDP4 499 aa12.92□□□□□ -0.34
LDLR-204ENST00000545707 MRPL18Q9H0U6 180 aaKnown RBP12.92□□□□□ -0.34
LDLR-204ENST00000545707 CBLN4Q9NTU7 201 aa12.92□□□□□ -0.34
LDLR-204ENST00000545707 ZNF705FA8MVS1 300 aaPredicted RBP12.91□□□□□ -0.34
LDLR-204ENST00000545707 ZNF705DP0CH99 300 aaPredicted RBP12.91□□□□□ -0.34
LDLR-204ENST00000545707 ZNF705BP0CI00 300 aaPredicted RBP12.91□□□□□ -0.34
LDLR-204ENST00000545707 TAS2R60P59551 318 aa12.91□□□□□ -0.34
LDLR-204ENST00000545707 RAB4BP61018 213 aa12.91□□□□□ -0.34
LDLR-204ENST00000545707 OR1L6Q8NGR2 347 aa12.91□□□□□ -0.34
LDLR-204ENST00000545707 NEUROG1Q92886 237 aa12.91□□□□□ -0.34
LDLR-204ENST00000545707 ZNF503Q96F45 646 aa12.91□□□□□ -0.34
LDLR-204ENST00000545707 GAFA1Q96PS6 74 aa12.91□□□□□ -0.34
LDLR-204ENST00000545707 ATG101Q9BSB4 218 aa12.91□□□□□ -0.34
LDLR-204ENST00000545707 RNF7Q9UBF6 113 aa12.91□□□□□ -0.34
LDLR-204ENST00000545707 FAM215AQ9Y5M1 114 aa12.91□□□□□ -0.34
LDLR-204ENST00000545707 OTOGLQ3ZCN5 2332 aa12.91□□□□□ -0.34
LDLR-204ENST00000545707 MBD3L4A6NDZ8 208 aaPredicted RBP12.91□□□□□ -0.34
LDLR-204ENST00000545707 MBD3L3A6NE82 208 aaPredicted RBP12.91□□□□□ -0.34
LDLR-204ENST00000545707 MBD3L5A6NJ08 208 aaPredicted RBP12.91□□□□□ -0.34
LDLR-204ENST00000545707 OR10J1P30954 320 aa12.91□□□□□ -0.34
LDLR-204ENST00000545707 TNFAIP6P98066 277 aaPredicted RBP12.91□□□□□ -0.34
LDLR-204ENST00000545707 FAM27E3Q08E93 113 aa12.91□□□□□ -0.34
LDLR-204ENST00000545707 FXYD3Q14802 87 aa12.91□□□□□ -0.34
LDLR-204ENST00000545707 TDRG1Q3Y452 100 aa12.91□□□□□ -0.34
LDLR-204ENST00000545707 PQLC2Q6ZP29 291 aa12.91□□□□□ -0.34
LDLR-204ENST00000545707 TGIF2LXQ8IUE1 241 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms