RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	RPP30	P78346	268 aa	Known RBP	10.3	□□□□□ -0.76
RNF4-222	ENST00000541204	CCL8	P80075	99 aa		10.3	□□□□□ -0.76
RNF4-222	ENST00000541204	TNFAIP6	P98066	277 aa	Predicted RBP	10.3	□□□□□ -0.76
RNF4-222	ENST00000541204	AARD	Q4LEZ3	155 aa		10.3	□□□□□ -0.76
RNF4-222	ENST00000541204	LBH	Q53QV2	105 aa	Predicted RBP	10.3	□□□□□ -0.76
RNF4-222	ENST00000541204	GFRAL	Q6UXV0	394 aa		10.3	□□□□□ -0.76
RNF4-222	ENST00000541204	TGIF2LX	Q8IUE1	241 aa		10.3	□□□□□ -0.76
RNF4-222	ENST00000541204	BEND2	Q8NDZ0	799 aa		10.3	□□□□□ -0.76
RNF4-222	ENST00000541204	OCC1	Q8TAD7	63 aa		10.3	□□□□□ -0.76
RNF4-222	ENST00000541204	IMMP2L	Q96T52	175 aa		10.3	□□□□□ -0.76
RNF4-222	ENST00000541204	FKBP11	Q9NYL4	201 aa		10.3	□□□□□ -0.76
RNF4-222	ENST00000541204	YTHDF2	Q9Y5A9	579 aa	Known RBP	10.3	□□□□□ -0.76
RNF4-222	ENST00000541204	GRIFIN	A4D1Z8	144 aa		10.29	□□□□□ -0.76
RNF4-222	ENST00000541204	EREG	O14944	169 aa		10.29	□□□□□ -0.76
RNF4-222	ENST00000541204	CXorf1	O96002	111 aa		10.29	□□□□□ -0.76
RNF4-222	ENST00000541204	SPACA3	Q8IXA5	215 aa		10.29	□□□□□ -0.76
RNF4-222	ENST00000541204	NBAS	A2RRP1	2371 aa		10.29	□□□□□ -0.76
RNF4-222	ENST00000541204	IGHV1-46	P01743	117 aa		10.29	□□□□□ -0.76
RNF4-222	ENST00000541204	SELENOV	P59797	346 aa		10.29	□□□□□ -0.76
RNF4-222	ENST00000541204	ERVK-16	P61578	105 aa		10.29	□□□□□ -0.76
RNF4-222	ENST00000541204	RELB	Q01201	579 aa		10.29	□□□□□ -0.76
RNF4-222	ENST00000541204		Q8NA96	180 aa		10.29	□□□□□ -0.76
RNF4-222	ENST00000541204	SNRNP40	Q96DI7	357 aa	Known RBP	10.29	□□□□□ -0.76
RNF4-222	ENST00000541204	C1orf159	Q96HA4	380 aa		10.29	□□□□□ -0.76
RNF4-222	ENST00000541204	SEPSECS	Q9HD40	501 aa	Known RBP	10.29	□□□□□ -0.76
RNF4-222	ENST00000541204	GCM1	Q9NP62	436 aa		10.29	□□□□□ -0.76
RNF4-222	ENST00000541204	TMEM140	Q9NV12	185 aa		10.29	□□□□□ -0.76
RNF4-222	ENST00000541204	FAM87A	P0C7U9	286 aa		10.28	□□□□□ -0.76
RNF4-222	ENST00000541204	SPATA31B1P	Q5VZV4	182 aa		10.28	□□□□□ -0.76
RNF4-222	ENST00000541204	C1orf229	Q6ZS94	237 aa	Predicted RBP	10.28	□□□□□ -0.76
RNF4-222	ENST00000541204	CCL13	Q99616	98 aa		10.28	□□□□□ -0.76
RNF4-222	ENST00000541204		A0A1B0GWJ7	208 aa		10.28	□□□□□ -0.76
RNF4-222	ENST00000541204	MGST3	O14880	152 aa		10.28	□□□□□ -0.76
RNF4-222	ENST00000541204	TRAT1	Q6PIZ9	186 aa		10.28	□□□□□ -0.76
RNF4-222	ENST00000541204	FAM90A1	Q86YD7	464 aa		10.28	□□□□□ -0.76
RNF4-222	ENST00000541204	C1orf174	Q8IYL3	243 aa		10.28	□□□□□ -0.76
RNF4-222	ENST00000541204	OR10G8	Q8NGN5	311 aa		10.28	□□□□□ -0.76
RNF4-222	ENST00000541204	S1PR3	Q99500	378 aa		10.28	□□□□□ -0.76
RNF4-222	ENST00000541204	FAM90A9P	A6NNJ1	464 aa		10.27	□□□□□ -0.76
RNF4-222	ENST00000541204	SLC17A3	O00476	420 aa		10.27	□□□□□ -0.76
RNF4-222	ENST00000541204	FOXH1	O75593	365 aa		10.27	□□□□□ -0.76
RNF4-222	ENST00000541204	IL6R	P08887	468 aa	Predicted RBP	10.27	□□□□□ -0.76
RNF4-222	ENST00000541204	CD33	P20138	364 aa		10.27	□□□□□ -0.76
RNF4-222	ENST00000541204	TMPRSS3	P57727	454 aa		10.27	□□□□□ -0.76
RNF4-222	ENST00000541204	HLA-DRB5	Q30154	266 aa		10.27	□□□□□ -0.76
RNF4-222	ENST00000541204	FAM216B	Q8N7L0	139 aa		10.27	□□□□□ -0.76
RNF4-222	ENST00000541204	BTF3L4	Q96K17	158 aa		10.27	□□□□□ -0.76
RNF4-222	ENST00000541204	MS4A10	Q96PG2	267 aa		10.27	□□□□□ -0.76
RNF4-222	ENST00000541204	CBLN4	Q9NTU7	201 aa		10.27	□□□□□ -0.76
RNF4-222	ENST00000541204	JPT1	Q9UK76	154 aa		10.27	□□□□□ -0.76
RNF4-222	ENST00000541204	TCF19	Q9Y242	345 aa		10.27	□□□□□ -0.76
RNF4-222	ENST00000541204	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	10.27	□□□□□ -0.76
RNF4-222	ENST00000541204	IGLV3-9	A0A075B6K5	115 aa		10.27	□□□□□ -0.77
RNF4-222	ENST00000541204	C16orf97	H3BN30	126 aa		10.27	□□□□□ -0.77
RNF4-222	ENST00000541204		K7EN84	100 aa		10.27	□□□□□ -0.77
RNF4-222	ENST00000541204	CBLN1	P23435	193 aa		10.27	□□□□□ -0.77
RNF4-222	ENST00000541204	LOXL3	P58215	753 aa		10.27	□□□□□ -0.77
RNF4-222	ENST00000541204	RAB4B	P61018	213 aa		10.27	□□□□□ -0.77
RNF4-222	ENST00000541204	RPL31	P62899	125 aa	Known RBP	10.27	□□□□□ -0.77
RNF4-222	ENST00000541204	EFNB3	Q15768	340 aa		10.27	□□□□□ -0.77
RNF4-222	ENST00000541204	ARSJ	Q5FYB0	599 aa	Predicted RBP	10.27	□□□□□ -0.77
RNF4-222	ENST00000541204	OR52E5	Q8NH55	327 aa		10.27	□□□□□ -0.77
RNF4-222	ENST00000541204	PPP1R35	Q8TAP8	253 aa		10.27	□□□□□ -0.77
RNF4-222	ENST00000541204	ATG101	Q9BSB4	218 aa		10.27	□□□□□ -0.77
RNF4-222	ENST00000541204	IFI27L2	Q9H2X8	130 aa		10.27	□□□□□ -0.77
RNF4-222	ENST00000541204	NPVF	Q9HCQ7	196 aa		10.27	□□□□□ -0.77
RNF4-222	ENST00000541204	NAGK	Q9UJ70	344 aa		10.27	□□□□□ -0.77
RNF4-222	ENST00000541204	PTPRQ	Q9UMZ3	2332 aa		10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	YPEL1	O60688	119 aa		10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	GCHFR	P30047	84 aa		10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	TDGF1P3	P51864	188 aa		10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	ZNF90	Q03938	601 aa		10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	STPG3	Q8N7X2	389 aa		10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	YPEL2	Q96QA6	119 aa		10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	TXNDC17	Q9BRA2	123 aa		10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	CALY	Q9NYX4	217 aa		10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	LSM4	Q9Y4Z0	139 aa	Known RBP	10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	LHB	P01229	141 aa		10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	GNG10	P50151	68 aa		10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	YPEL3	P61236	119 aa	Predicted RBP	10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	BSPH1	Q075Z2	132 aa		10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	TBR1	Q16650	682 aa		10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	TMEM108	Q6UXF1	575 aa		10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	SNHG12	Q9BXW3	62 aa		10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	RNF7	Q9UBF6	113 aa		10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	DPRX	A6NFQ7	191 aa		10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	CMTM2	Q8TAZ6	248 aa		10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	TP53TG3	Q9ULZ0	132 aa		10.26	□□□□□ -0.77
RNF4-222	ENST00000541204	DSCAM	O60469	2012 aa		10.25	□□□□□ -0.77
RNF4-222	ENST00000541204	ZNF705F	A8MVS1	300 aa	Predicted RBP	10.25	□□□□□ -0.77
RNF4-222	ENST00000541204	ZNF705D	P0CH99	300 aa	Predicted RBP	10.25	□□□□□ -0.77
RNF4-222	ENST00000541204	ZNF705B	P0CI00	300 aa	Predicted RBP	10.25	□□□□□ -0.77
RNF4-222	ENST00000541204	MYOD1	P15172	320 aa		10.25	□□□□□ -0.77
RNF4-222	ENST00000541204	ERVFC1-1	P60608	527 aa		10.25	□□□□□ -0.77
RNF4-222	ENST00000541204	NUTF2	P61970	127 aa	Known RBP	10.25	□□□□□ -0.77
RNF4-222	ENST00000541204	C1orf194	Q5T5A4	169 aa		10.25	□□□□□ -0.77
RNF4-222	ENST00000541204	TEPP	Q6URK8	271 aa		10.25	□□□□□ -0.77
RNF4-222	ENST00000541204	ZNRD1	Q9P1U0	126 aa		10.25	□□□□□ -0.77
RNF4-222	ENST00000541204	ATRX	P46100	2492 aa		10.25	□□□□□ -0.77
RNF4-222	ENST00000541204	TCAP	O15273	167 aa		10.25	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms