RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 SLURP1P55000 103 aa9.97□□□□□ -0.81
VPS28-216ENST00000533806 RAB25P57735 213 aa9.97□□□□□ -0.81
VPS28-216ENST00000533806 WT1-ASQ06250 92 aa9.97□□□□□ -0.81
VPS28-216ENST00000533806 OR10W1Q8NGF6 305 aa9.97□□□□□ -0.81
VPS28-216ENST00000533806 DEDD2Q8WXF8 326 aa9.97□□□□□ -0.81
VPS28-216ENST00000533806 DPF1Q92782 380 aa9.97□□□□□ -0.81
VPS28-216ENST00000533806 GPR61Q9BZJ8 451 aa9.97□□□□□ -0.81
VPS28-216ENST00000533806 RANGRFQ9HD47 186 aaPredicted RBP9.97□□□□□ -0.81
VPS28-216ENST00000533806 IGLV11-55A0A075B6I3 123 aa9.96□□□□□ -0.82
VPS28-216ENST00000533806 C15orf61A6NNL5 157 aa9.96□□□□□ -0.82
VPS28-216ENST00000533806 CDS2O95674 445 aa9.96□□□□□ -0.82
VPS28-216ENST00000533806 TRAPPC2P0DI81 140 aa9.96□□□□□ -0.82
VPS28-216ENST00000533806 TRAPPC2BP0DI82 140 aa9.96□□□□□ -0.82
VPS28-216ENST00000533806 HOXD3P31249 432 aaPredicted RBP9.96□□□□□ -0.82
VPS28-216ENST00000533806 KLF5Q13887 457 aaPredicted RBP9.96□□□□□ -0.82
VPS28-216ENST00000533806 SP6Q3SY56 376 aa9.96□□□□□ -0.82
VPS28-216ENST00000533806 SPANXN2Q5MJ10 180 aa9.96□□□□□ -0.82
VPS28-216ENST00000533806 THOC7Q6I9Y2 204 aaKnown RBP9.96□□□□□ -0.82
VPS28-216ENST00000533806 REC114Q7Z4M0 266 aa9.96□□□□□ -0.82
VPS28-216ENST00000533806 CCDC71LQ8N9Z2 235 aa9.96□□□□□ -0.82
VPS28-216ENST00000533806 OR1L8Q8NGR8 309 aa9.96□□□□□ -0.82
VPS28-216ENST00000533806 OR5B3Q8NH48 314 aa9.96□□□□□ -0.82
VPS28-216ENST00000533806 GLYATL2Q8WU03 294 aa9.96□□□□□ -0.82
VPS28-216ENST00000533806 TMEM230Q96A57 120 aa9.96□□□□□ -0.82
VPS28-216ENST00000533806 TSC22D3Q99576 134 aa9.96□□□□□ -0.82
VPS28-216ENST00000533806 SDHCQ99643 169 aaPredicted RBP9.96□□□□□ -0.82
VPS28-216ENST00000533806 TMEM222Q9H0R3 208 aa9.96□□□□□ -0.82
VPS28-216ENST00000533806 AURKAIP1Q9NWT8 199 aaPredicted RBP9.96□□□□□ -0.82
VPS28-216ENST00000533806 FKBP11Q9NYL4 201 aa9.96□□□□□ -0.82
VPS28-216ENST00000533806 COPZ2Q9P299 210 aa9.96□□□□□ -0.82
VPS28-216ENST00000533806 PEF1Q9UBV8 284 aaKnown RBP9.96□□□□□ -0.82
VPS28-216ENST00000533806 PRNDQ9UKY0 176 aa9.96□□□□□ -0.82
VPS28-216ENST00000533806 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.95□□□□□ -0.82
VPS28-216ENST00000533806 A0A0B4J293 547 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 TEX13DA0A0J9YY54 714 aaPredicted RBP9.95□□□□□ -0.82
VPS28-216ENST00000533806 ANKRD34BA5PLL1 514 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 A6NHS1 94 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 CRYM-AS1A6NIL9 109 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 SEC14L6B5MCN3 397 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 OVOL1O14753 267 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 SNAPC5O75971 98 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 OR2J3O76001 311 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 NDUFB8O95169 186 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 REG1AP05451 166 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 AP3S2P59780 193 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 ATP5G2Q06055 141 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 BAK1Q16611 211 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 IZUMO4Q1ZYL8 232 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 C15orf32Q32M92 178 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 C9orf66Q5T8R8 295 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 ACSM6Q6P461 480 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 H2BFWTQ7Z2G1 175 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 HSD17B13Q7Z5P4 300 aaPredicted RBP9.95□□□□□ -0.82
VPS28-216ENST00000533806 ZNF429Q86V71 674 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 TOMM5Q8N4H5 51 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 LHFPL5Q8TAF8 219 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 NAA60Q9H7X0 242 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 SCP2D1Q9UJQ7 156 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 FBXL7Q9UJT9 491 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 C14orf166Q9Y224 244 aaKnown RBP9.95□□□□□ -0.82
VPS28-216ENST00000533806 OR51B2Q9Y5P1 312 aa9.95□□□□□ -0.82
VPS28-216ENST00000533806 A0A0G2JRQ6 117 aa9.94□□□□□ -0.82
VPS28-216ENST00000533806 BMPR1BO00238 502 aa9.94□□□□□ -0.82
VPS28-216ENST00000533806 DHFRP00374 187 aa9.94□□□□□ -0.82
VPS28-216ENST00000533806 OR13C7P0DN81 318 aa9.94□□□□□ -0.82
VPS28-216ENST00000533806 ZP3P21754 424 aa9.94□□□□□ -0.82
VPS28-216ENST00000533806 INSL3P51460 131 aa9.94□□□□□ -0.82
VPS28-216ENST00000533806 SUPT4H1P63272 117 aaKnown RBP9.94□□□□□ -0.82
VPS28-216ENST00000533806 AARDQ4LEZ3 155 aa9.94□□□□□ -0.82
VPS28-216ENST00000533806 IL34Q6ZMJ4 242 aa9.94□□□□□ -0.82
VPS28-216ENST00000533806 LSM10Q969L4 123 aaKnown RBP9.94□□□□□ -0.82
VPS28-216ENST00000533806 GALNT14Q96FL9 552 aa9.94□□□□□ -0.82
VPS28-216ENST00000533806 TMEM56Q96MV1 263 aa9.94□□□□□ -0.82
VPS28-216ENST00000533806 MCUBQ9NWR8 336 aa9.94□□□□□ -0.82
VPS28-216ENST00000533806 TMEM56-RWDD3S4R434 201 aa9.94□□□□□ -0.82
VPS28-216ENST00000533806 OR5AC1P0C628 307 aa9.93□□□□□ -0.82
VPS28-216ENST00000533806 HIST1H1BP16401 226 aaKnown RBP9.93□□□□□ -0.82
VPS28-216ENST00000533806 FAUP35544 74 aaKnown RBP9.93□□□□□ -0.82
VPS28-216ENST00000533806 MFAP2P55001 183 aa9.93□□□□□ -0.82
VPS28-216ENST00000533806 HSPE1P61604 102 aaKnown RBP9.93□□□□□ -0.82
VPS28-216ENST00000533806 EXOSC2Q13868 293 aaKnown RBP9.93□□□□□ -0.82
VPS28-216ENST00000533806 Q6ZRM9 215 aa9.93□□□□□ -0.82
VPS28-216ENST00000533806 CCDC140Q96MF4 163 aa9.93□□□□□ -0.82
VPS28-216ENST00000533806 WI2-2373I1.2A0A1W2PRP0 233 aa9.92□□□□□ -0.82
VPS28-216ENST00000533806 INS-IGF2F8WCM5 200 aa9.92□□□□□ -0.82
VPS28-216ENST00000533806 K7EIL1 84 aa9.92□□□□□ -0.82
VPS28-216ENST00000533806 ATG12O94817 140 aa9.92□□□□□ -0.82
VPS28-216ENST00000533806 DEFA4P12838 97 aa9.92□□□□□ -0.82
VPS28-216ENST00000533806 PRCDQ00LT1 54 aa9.92□□□□□ -0.82
VPS28-216ENST00000533806 DHODHQ02127 395 aa9.92□□□□□ -0.82
VPS28-216ENST00000533806 TMEM187Q14656 261 aa9.92□□□□□ -0.82
VPS28-216ENST00000533806 FAM209BQ5JX69 171 aa9.92□□□□□ -0.82
VPS28-216ENST00000533806 SELENOHQ8IZQ5 122 aaKnown RBP9.92□□□□□ -0.82
VPS28-216ENST00000533806 OR4A16Q8NH70 328 aa9.92□□□□□ -0.82
VPS28-216ENST00000533806 SCGB3A2Q96PL1 93 aa9.92□□□□□ -0.82
VPS28-216ENST00000533806 F11RQ9Y624 299 aaKnown RBP9.92□□□□□ -0.82
VPS28-216ENST00000533806 MFSD2BA6NFX1 497 aa9.91□□□□□ -0.82
VPS28-216ENST00000533806 TRIM16LQ309B1 348 aa9.91□□□□□ -0.82
VPS28-216ENST00000533806 LINC00299Q6ZSB3 139 aa9.91□□□□□ -0.82
VPS28-216ENST00000533806 FAM219AQ8IW50 185 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms