RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	THSD7B	Q9C0I4	1608 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	CCDC88C	Q9P219	2028 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	ARFGEF1	Q9Y6D6	1849 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	NOTCH4	Q99466	2003 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110		A0A0U1RRA0	63 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	ZNF732	B4DXR9	585 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	GGTLC3	B5MD39	225 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	CSN3	P07498	182 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	SLC25A6	P12236	298 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	CRISP2	P16562	243 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	PRTN3	P24158	256 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	RPL12	P30050	165 aa	Known RBP	4.55	□□□□□ -1.68
CD44-231	ENST00000531110	CCR2	P41597	374 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	OR1D5	P58170	312 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	RPL31	P62899	125 aa	Known RBP	4.55	□□□□□ -1.68
CD44-231	ENST00000531110	FMOD	Q06828	376 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	ZNF415	Q09FC8	603 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	CLEC12B	Q2HXU8	276 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	GGTA1P	Q4G0N0	100 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	SIGLEC15	Q6ZMC9	328 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110		Q6ZS49	121 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110		Q75L30	129 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	SMIM29	Q86T20	159 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	SGPP2	Q8IWX5	399 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	C10orf111	Q8N326	155 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	OR4X2	Q8NGF9	303 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	OR51H1	Q8NH63	302 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	FNDC9	Q8TBE3	224 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	SCGB1C1	Q8TD33	95 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	SLC37A2	Q8TED4	501 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	C2orf15	Q8WU43	125 aa	Known RBP	4.55	□□□□□ -1.68
CD44-231	ENST00000531110	TMEM37	Q8WXS4	190 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	LSM10	Q969L4	123 aa	Known RBP	4.55	□□□□□ -1.68
CD44-231	ENST00000531110	BORCS7	Q96B45	105 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	KCNS1	Q96KK3	526 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	MCEE	Q96PE7	176 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	OR2H1	Q9GZK4	316 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	IKZF5	Q9H5V7	419 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	NRN1	Q9NPD7	142 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	TVP23B	Q9NYZ1	205 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	LHX3	Q9UBR4	397 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	KLK11	Q9UBX7	282 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	PRND	Q9UKY0	176 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	RARRES3	Q9UL19	164 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	TP53TG1	Q9Y2A0	90 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	NSG2	Q9Y328	171 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	FIS1	Q9Y3D6	152 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	OR2W1	Q9Y3N9	320 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	ANKRD12	Q6UB98	2062 aa		4.55	□□□□□ -1.68
CD44-231	ENST00000531110	ANKRD36	A6QL64	1941 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	LOC102724200	A0A096LPH7	203 aa	Predicted RBP	4.54	□□□□□ -1.68
CD44-231	ENST00000531110	TRGV10	A0A0A0MS01	117 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110		A0A0A6YYD5	115 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	MUC21	A0A0G2JKD1	596 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	MUC21	A0A140T8X8	626 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	LOC102725191	A0A1B0GVB3	256 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	TSPAN11	A1L157	253 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	LRRC30	A6NM36	301 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	OR1I1	O60431	355 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	GPR137B	O60478	399 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	H2BFM	P0C1H6	154 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	S100A3	P33764	101 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	GLRX	P35754	106 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	NOV	P48745	357 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	CAMP	P49913	170 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	EMP1	P54849	157 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	XG	P55808	180 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	DYNLT1	P63172	113 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	CX3CL1	P78423	397 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	ZNF85	Q03923	595 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	ARL16	Q0P5N6	197 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	GAGE2B	Q13066	116 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	CATR1	Q13166	79 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	FAM53B	Q14153	422 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	CDK5R1	Q15078	307 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	C3AR1	Q16581	482 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	FAM174B	Q3ZCQ3	159 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	TIGIT	Q495A1	244 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	GAGE2E	Q4V326	116 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	TTC32	Q5I0X7	151 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	MUC21	Q5SSG8	566 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	LYSMD4	Q5XG99	296 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	GAGE2A	Q6NT46	116 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	RASL11A	Q6T310	242 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	TMEM64	Q6YI46	380 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	ADAMTSL5	Q6ZMM2	481 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	LINC00336	Q6ZUF6	198 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	ZNF433	Q8N7K0	673 aa	Predicted RBP	4.54	□□□□□ -1.68
CD44-231	ENST00000531110	OR8B3	Q8NGG8	313 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	OR10G7	Q8NGN6	311 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	OR1F12	Q8NHA8	337 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	RDH5	Q92781	318 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	NEIL2	Q969S2	332 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	PLEKHB2	Q96CS7	222 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	PGLYRP3	Q96LB9	341 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	LINC01600	Q96MT4	127 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	OR8B2	Q96RD0	313 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	TXNDC17	Q9BRA2	123 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	GNB1L	Q9BYB4	327 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	KRTAP2-2	Q9BYT5	123 aa		4.54	□□□□□ -1.68

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