RNA–Protein interactions for RNA: ENST00000514654.5

ATP2C1-222, Transcript of ATPase secretory pathway Ca2+ transporting 1, human

TSL 1 (best)

Gene ATP2C1, Length 4,730 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATP2C1-222	ENST00000514654	CSPG4	Q6UVK1	2322 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	IGHV3-66	A0A0C4DH42	116 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	NPIPB11	E5RHQ5	1161 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	PRSS1	P07477	247 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	MGP	P08493	103 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	TCTA	P57738	103 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	KIAA1644	Q3SXP7	199 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	PRR30	Q53SZ7	412 aa	Predicted RBP	5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	IBA57	Q5T440	356 aa	Known RBP	5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	BIVM	Q86UB2	503 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	FAM90A1	Q86YD7	464 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	DYNLRB2	Q8TF09	96 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	C16orf92	Q96LL3	132 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	LINC00312	Q9Y6C7	94 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	TMEM56-RWDD3	S4R434	201 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	LOC389332	A0A1B0GUA5	103 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	TM4SF5	O14894	197 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	FOXH1	O75593	365 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	LY6H	O94772	140 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	APCS	P02743	223 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	PRB4	P10163	310 aa	Predicted RBP	5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	HNRNPA3	P51991	378 aa	Known RBP	5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	PTTG1IP	P53801	180 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	LINC00205	P59089	165 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	SUPT4H1	P63272	117 aa	Known RBP	5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	RIG	Q13278	110 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	ZNF324B	Q6AW86	544 aa	Predicted RBP	5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	ATRAID	Q6UW56	229 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	KLHDC1	Q8N7A1	406 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	OSR1	Q8TAX0	266 aa	Predicted RBP	5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	VKORC1	Q9BQB6	163 aa		5.15	□□□□□ -1.58
ATP2C1-222	ENST00000514654	CENPF	P49454	3210 aa		5.15	□□□□□ -1.59
ATP2C1-222	ENST00000514654	PIEZO1	Q92508	2521 aa		5.15	□□□□□ -1.59
ATP2C1-222	ENST00000514654	TECTA	O75443	2155 aa		5.15	□□□□□ -1.59
ATP2C1-222	ENST00000514654	SAA1	P0DJI8	122 aa	Predicted RBP	5.15	□□□□□ -1.59
ATP2C1-222	ENST00000514654	GCHFR	P30047	84 aa		5.15	□□□□□ -1.59
ATP2C1-222	ENST00000514654	ZNF474	Q6S9Z5	364 aa	Predicted RBP	5.15	□□□□□ -1.59
ATP2C1-222	ENST00000514654	C18orf12	Q96KH6	178 aa		5.15	□□□□□ -1.59
ATP2C1-222	ENST00000514654	HSPB7	Q9UBY9	170 aa		5.15	□□□□□ -1.59
ATP2C1-222	ENST00000514654	SLC25A15	Q9Y619	301 aa		5.15	□□□□□ -1.59
ATP2C1-222	ENST00000514654	NCOR2	Q9Y618	2525 aa		5.15	□□□□□ -1.59
ATP2C1-222	ENST00000514654		A0A0G2JNJ9	132 aa		5.15	□□□□□ -1.59
ATP2C1-222	ENST00000514654	BMPR1B	O00238	502 aa		5.15	□□□□□ -1.59
ATP2C1-222	ENST00000514654	CGA	P01215	116 aa		5.15	□□□□□ -1.59
ATP2C1-222	ENST00000514654	NAT1	P18440	290 aa		5.15	□□□□□ -1.59
ATP2C1-222	ENST00000514654	TIMP3	P35625	211 aa		5.15	□□□□□ -1.59
ATP2C1-222	ENST00000514654	WDFY1	Q8IWB7	410 aa		5.15	□□□□□ -1.59
ATP2C1-222	ENST00000514654	METTL26	Q96S19	204 aa		5.15	□□□□□ -1.59
ATP2C1-222	ENST00000514654	IFI27L2	Q9H2X8	130 aa		5.15	□□□□□ -1.59
ATP2C1-222	ENST00000514654		Q9UFV3	132 aa		5.15	□□□□□ -1.59
ATP2C1-222	ENST00000514654	SPANXN1	Q5VSR9	72 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	GOLT1A	Q6ZVE7	132 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	LINC00305	Q7Z4B0	112 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	ZNF525	Q8N782	197 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	ZNF738	Q8NE65	137 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	FOXA2	Q9Y261	457 aa	Predicted RBP	5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	YTHDF2	Q9Y5A9	579 aa	Known RBP	5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	SRRM5	B3KS81	715 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	YPEL1	O60688	119 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	OTX1	P32242	354 aa	Predicted RBP	5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	SRSF3	P84103	164 aa	Known RBP	5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	MEF2C	Q06413	473 aa	Predicted RBP	5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	VAMP3	Q15836	100 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654		Q6ZS92	163 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	CD177	Q8N6Q3	437 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	OR4B1	Q8NGF8	309 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	FAM168A	Q92567	244 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	NEUROG1	Q92886	237 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	YPEL2	Q96QA6	119 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	PSMG3	Q9BT73	122 aa	Predicted RBP	5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	C7orf69	Q9H7B7	122 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	PLXND1	Q9Y4D7	1925 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654		A8MWL6	223 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	AMY1A	P04745	511 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	NTF4	P34130	210 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	TMEM30B	Q3MIR4	351 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	TMEM177	Q53S58	311 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	TMEM78	Q5T7P6	136 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	RBPMS2	Q6ZRY4	209 aa	Known RBP	5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	LHFPL1	Q86WI0	220 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	NEU4	Q8WWR8	484 aa	Predicted RBP	5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	SPSB4	Q96A44	273 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	PGLYRP4	Q96LB8	373 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	RFNG	Q9Y644	331 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	MALRD1	Q5VYJ5	2156 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	TMEM189	A5PLL7	270 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	ISLR	O14498	428 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	TGFA	P01135	160 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	IGKV3-20	P01619	116 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	OR9G9	P0C7N8	305 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	AGA	P20933	346 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	DUT	P33316	252 aa	Known RBP	5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	PAFAH1B2	P68402	229 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	QRFP	P83859	136 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	TM4SF20	Q53R12	229 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	C10orf55	Q5SWW7	151 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	CYP2G1P	Q6ZSU1	146 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	OR8A1	Q8NGG7	326 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	GATAD1	Q8WUU5	269 aa		5.14	□□□□□ -1.59
ATP2C1-222	ENST00000514654	ELOA3C	A0A087WX78	387 aa	Predicted RBP	5.13	□□□□□ -1.59

Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms