RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ZXDCQ2QGD7 858 aaPredicted RBP3.05□□□□□ -1.92
USP53-205ENST00000509769 C1orf220Q5T0J3 134 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 C1QL3Q5VWW1 255 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 MBNL2Q5VZF2 373 aaKnown RBP3.05□□□□□ -1.92
USP53-205ENST00000509769 Q6Q795 121 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 DEFB125Q8N687 156 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 ADAD2Q8NCV1 583 aaKnown RBP3.05□□□□□ -1.92
USP53-205ENST00000509769 CLEC4DQ8WXI8 215 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 FAM110AQ9BQ89 295 aa3.05□□□□□ -1.92
USP53-205ENST00000509769 C6orf106Q9H6K1 298 aaPredicted RBP3.05□□□□□ -1.92
USP53-205ENST00000509769 AURKAIP1Q9NWT8 199 aaPredicted RBP3.05□□□□□ -1.92
USP53-205ENST00000509769 TRIOBPQ9H2D6 2365 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 A0A0U1RQF3 1178 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 F8WEM9 126 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 G3V4G9 280 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 H3BT86 120 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 PEX7O00628 323 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 MGST3O14880 152 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 KLK10O43240 276 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 NPYP01303 97 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 NBEAP1P0C6P0 100 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 PI3P19957 117 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 HERV-K104P63124 156 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 TMEM52BQ4KMG9 183 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 MIC13Q5XKP0 118 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 C8orf86Q6ZUL3 223 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 PRNTQ86SH4 94 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 ZNF740Q8NDX6 193 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 FAM222BQ8WU58 562 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 PGLYRP4Q96LB8 373 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 TEX37Q96LM6 180 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 SLC50A1Q9BRV3 221 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 ABHD14AQ9BUJ0 271 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 MLST8Q9BVC4 326 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 BEX4Q9NWD9 120 aaPredicted RBP3.04□□□□□ -1.92
USP53-205ENST00000509769 PKIGQ9Y2B9 76 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 MYH11P35749 1972 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 TRBV5-7A0A0A0MS05 114 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 C9JAW5 83 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 FRS3O43559 492 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 TBX6O95947 436 aaPredicted RBP3.04□□□□□ -1.92
USP53-205ENST00000509769 IGHV4-39P01824 125 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 SCTP09683 121 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 CSRP1P21291 193 aaKnown RBP3.04□□□□□ -1.92
USP53-205ENST00000509769 ZNF137PP52743 207 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 GNG5P63218 68 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 MRPS11P82912 194 aaKnown RBP3.04□□□□□ -1.92
USP53-205ENST00000509769 LAGE3Q14657 143 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 ICAM4Q14773 271 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 IER5LQ5T953 404 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 C19orf48Q6RUI8 117 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 Q6ZS92 163 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 TMEM179BQ7Z7N9 219 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 VN1R2Q8NFZ6 395 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 PFN4Q8NHR9 129 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 CLEC4CQ8WTT0 213 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 SRSF12Q8WXF0 261 aaKnown RBP3.04□□□□□ -1.92
USP53-205ENST00000509769 LPPQ93052 612 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 LINC00615Q96LM1 132 aaPredicted RBP3.04□□□□□ -1.92
USP53-205ENST00000509769 ADOQ96SZ5 270 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 PRR15LQ9BU68 103 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 REG4Q9BYZ8 158 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 RETNQ9HD89 108 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 HIGD1BQ9P298 99 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 NPIPB13A6NJU9 1138 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 NPIPB4C9JG80 1138 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 F6UB75 175 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 H3BML4 177 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 EREGO14944 169 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 NDUFS5O43920 106 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 FOXG1P55316 489 aaPredicted RBP3.04□□□□□ -1.92
USP53-205ENST00000509769 YPEL3P61236 119 aaPredicted RBP3.04□□□□□ -1.92
USP53-205ENST00000509769 DAD1P61803 113 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 SUMO2P61956 95 aaKnown RBP3.04□□□□□ -1.92
USP53-205ENST00000509769 TMEM187Q14656 261 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 RRN3P1Q2M238 152 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 COX20Q5RI15 118 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 GAPTQ8N292 157 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 LYPD6BQ8NI32 183 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 C18orf32Q8TCD1 76 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 CCL27Q9Y4X3 112 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 ZNF236Q9UL36 1845 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 GRIFINA4D1Z8 144 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 CEACAM18A8MTB9 384 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 TMPRSS2O15393 492 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 KLF4O43474 513 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 TNFSF14O43557 240 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 EDIL3O43854 480 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 GREM1O60565 184 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 LDB3O75112 727 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 NXPH3O95157 252 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 CMC4P56277 68 aaPredicted RBP3.04□□□□□ -1.92
USP53-205ENST00000509769 MP68P56378 58 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 CD300CQ08708 224 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 MPV17L2Q567V2 206 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 LINC00643Q86TS7 51 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 C1orf210Q8IVY1 113 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 KLHDC9Q8NEP7 349 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 FLYWCH2Q96CP2 140 aaKnown RBP3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms