RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 MRPS10P82664 201 aaKnown RBP10.6□□□□□ -0.71
SYNE1-226ENST00000488376 RPEL1Q2QD12 228 aa10.6□□□□□ -0.71
SYNE1-226ENST00000488376 KLK9Q2XQG4 91 aa10.6□□□□□ -0.71
SYNE1-226ENST00000488376 SP6Q3SY56 376 aa10.6□□□□□ -0.71
SYNE1-226ENST00000488376 C11orf87Q6NUJ2 197 aa10.6□□□□□ -0.71
SYNE1-226ENST00000488376 ADAMTSL5Q6ZMM2 481 aa10.6□□□□□ -0.71
SYNE1-226ENST00000488376 OR9G4Q8NGQ1 327 aa10.6□□□□□ -0.71
SYNE1-226ENST00000488376 TERB2Q8NHR7 220 aa10.6□□□□□ -0.71
SYNE1-226ENST00000488376 ZC4H2Q9NQZ6 224 aa10.6□□□□□ -0.71
SYNE1-226ENST00000488376 NDUFA4L2Q9NRX3 87 aa10.6□□□□□ -0.71
SYNE1-226ENST00000488376 KLK9Q9UKQ9 250 aa10.6□□□□□ -0.71
SYNE1-226ENST00000488376 OR51B2Q9Y5P1 312 aa10.6□□□□□ -0.71
SYNE1-226ENST00000488376 GSTZ1O43708 216 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-226ENST00000488376 IGLV1-51P01701 117 aa10.59□□□□□ -0.71
SYNE1-226ENST00000488376 CSN3P07498 182 aa10.59□□□□□ -0.71
SYNE1-226ENST00000488376 FGF2P09038 288 aa10.59□□□□□ -0.71
SYNE1-226ENST00000488376 TRAPPC2P0DI81 140 aa10.59□□□□□ -0.71
SYNE1-226ENST00000488376 TRAPPC2BP0DI82 140 aa10.59□□□□□ -0.71
SYNE1-226ENST00000488376 OR13C7P0DN81 318 aa10.59□□□□□ -0.71
SYNE1-226ENST00000488376 DEFA4P12838 97 aa10.59□□□□□ -0.71
SYNE1-226ENST00000488376 PTBP1P26599 531 aaKnown RBP eCLIP10.59□□□□□ -0.71
SYNE1-226ENST00000488376 SSBP1Q04837 148 aaKnown RBP10.59□□□□□ -0.71
SYNE1-226ENST00000488376 CLEC19AQ6UXS0 136 aa10.59□□□□□ -0.71
SYNE1-226ENST00000488376 OR1L8Q8NGR8 309 aa10.59□□□□□ -0.71
SYNE1-226ENST00000488376 OR4C12Q96R67 309 aa10.59□□□□□ -0.71
SYNE1-226ENST00000488376 TMEM14BQ9NUH8 114 aa10.59□□□□□ -0.71
SYNE1-226ENST00000488376 V9GYH0 126 aa10.59□□□□□ -0.71
SYNE1-226ENST00000488376 IGHV3-21A0A0B4J1V1 117 aa10.58□□□□□ -0.72
SYNE1-226ENST00000488376 A0A0G2JRQ6 117 aa10.58□□□□□ -0.72
SYNE1-226ENST00000488376 C3orf85A0A1B0GTC6 90 aa10.58□□□□□ -0.72
SYNE1-226ENST00000488376 ANKRD20A5PA0PJZ0 165 aa10.58□□□□□ -0.72
SYNE1-226ENST00000488376 C15orf61A6NNL5 157 aa10.58□□□□□ -0.72
SYNE1-226ENST00000488376 H0Y980 276 aa10.58□□□□□ -0.72
SYNE1-226ENST00000488376 OR2C1O95371 312 aa10.58□□□□□ -0.72
SYNE1-226ENST00000488376 SERPINE2P07093 398 aa10.58□□□□□ -0.72
SYNE1-226ENST00000488376 S100GP29377 79 aa10.58□□□□□ -0.72
SYNE1-226ENST00000488376 SPINK9Q5DT21 86 aa10.58□□□□□ -0.72
SYNE1-226ENST00000488376 GDPD1Q8N9F7 314 aa10.58□□□□□ -0.72
SYNE1-226ENST00000488376 OR51S1Q8NGJ8 323 aa10.58□□□□□ -0.72
SYNE1-226ENST00000488376 ZNF486Q96H40 463 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-226ENST00000488376 RTBDNQ9BSG5 229 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-226ENST00000488376 ELOVL1Q9BW60 279 aa10.58□□□□□ -0.72
SYNE1-226ENST00000488376 FAM212BQ9NTI7 297 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-226ENST00000488376 RSL24D1Q9UHA3 163 aaKnown RBP10.58□□□□□ -0.72
SYNE1-226ENST00000488376 SELENOKQ9Y6D0 94 aa10.58□□□□□ -0.72
SYNE1-226ENST00000488376 IZUMO1RA6ND01 250 aa10.57□□□□□ -0.72
SYNE1-226ENST00000488376 FABP12A6NFH5 140 aa10.57□□□□□ -0.72
SYNE1-226ENST00000488376 SNAPC5O75971 98 aa10.57□□□□□ -0.72
SYNE1-226ENST00000488376 P0C879 139 aa10.57□□□□□ -0.72
SYNE1-226ENST00000488376 AKAIN1P0CW23 69 aa10.57□□□□□ -0.72
SYNE1-226ENST00000488376 GP9P14770 177 aa10.57□□□□□ -0.72
SYNE1-226ENST00000488376 MEF2DQ14814 521 aa10.57□□□□□ -0.72
SYNE1-226ENST00000488376 ZNF79Q15937 498 aa10.57□□□□□ -0.72
SYNE1-226ENST00000488376 H2BFWTQ7Z2G1 175 aa10.57□□□□□ -0.72
SYNE1-226ENST00000488376 CADM3Q8N126 398 aa10.57□□□□□ -0.72
SYNE1-226ENST00000488376 B9D2Q9BPU9 175 aa10.57□□□□□ -0.72
SYNE1-226ENST00000488376 SRSF8Q9BRL6 282 aaKnown RBP10.57□□□□□ -0.72
SYNE1-226ENST00000488376 C5orf66Q9H5L9 145 aa10.57□□□□□ -0.72
SYNE1-226ENST00000488376 ZMAT5Q9UDW3 170 aaKnown RBP10.57□□□□□ -0.72
SYNE1-226ENST00000488376 PRNDQ9UKY0 176 aa10.57□□□□□ -0.72
SYNE1-226ENST00000488376 COL7A1Q02388 2944 aa10.57□□□□□ -0.72
SYNE1-226ENST00000488376 A0A0B4J293 547 aa10.56□□□□□ -0.72
SYNE1-226ENST00000488376 DHFRP00374 187 aa10.56□□□□□ -0.72
SYNE1-226ENST00000488376 CTSDP07339 412 aaPredicted RBP10.56□□□□□ -0.72
SYNE1-226ENST00000488376 HIST1H1BP16401 226 aaKnown RBP10.56□□□□□ -0.72
SYNE1-226ENST00000488376 ARL3P36405 182 aa10.56□□□□□ -0.72
SYNE1-226ENST00000488376 CD69Q07108 199 aa10.56□□□□□ -0.72
SYNE1-226ENST00000488376 OR6Q1Q8NGQ2 317 aa10.56□□□□□ -0.72
SYNE1-226ENST00000488376 LHFPL5Q8TAF8 219 aa10.56□□□□□ -0.72
SYNE1-226ENST00000488376 ZNF502Q8TBZ5 544 aa10.56□□□□□ -0.72
SYNE1-226ENST00000488376 ZFAND1Q8TCF1 268 aa10.56□□□□□ -0.72
SYNE1-226ENST00000488376 CACNG8Q8WXS5 425 aa10.56□□□□□ -0.72
SYNE1-226ENST00000488376 LSM10Q969L4 123 aaKnown RBP10.56□□□□□ -0.72
SYNE1-226ENST00000488376 TRIM63Q969Q1 353 aa10.56□□□□□ -0.72
SYNE1-226ENST00000488376 EEF1AKMT3Q96AZ1 226 aa10.56□□□□□ -0.72
SYNE1-226ENST00000488376 PRR13Q9NZ81 148 aa10.56□□□□□ -0.72
SYNE1-226ENST00000488376 COPZ2Q9P299 210 aa10.56□□□□□ -0.72
SYNE1-226ENST00000488376 F11RQ9Y624 299 aaKnown RBP10.56□□□□□ -0.72
SYNE1-226ENST00000488376 IGHV3-35A0A0C4DH35 117 aa10.55□□□□□ -0.72
SYNE1-226ENST00000488376 DISC1C4P0D8 188 aa10.55□□□□□ -0.72
SYNE1-226ENST00000488376 GGCTO75223 188 aaKnown RBP10.55□□□□□ -0.72
SYNE1-226ENST00000488376 CLEC3BP05452 202 aa10.55□□□□□ -0.72
SYNE1-226ENST00000488376 OR5AC1P0C628 307 aa10.55□□□□□ -0.72
SYNE1-226ENST00000488376 UCP1P25874 307 aa10.55□□□□□ -0.72
SYNE1-226ENST00000488376 GPR183P32249 361 aa10.55□□□□□ -0.72
SYNE1-226ENST00000488376 TRIM16LQ309B1 348 aa10.55□□□□□ -0.72
SYNE1-226ENST00000488376 SLC25A24Q6NUK1 477 aa10.55□□□□□ -0.72
SYNE1-226ENST00000488376 OR5B3Q8NH48 314 aa10.55□□□□□ -0.72
SYNE1-226ENST00000488376 OR4A16Q8NH70 328 aa10.55□□□□□ -0.72
SYNE1-226ENST00000488376 TMEM230Q96A57 120 aa10.55□□□□□ -0.72
SYNE1-226ENST00000488376 ASCL2Q99929 193 aa10.55□□□□□ -0.72
SYNE1-226ENST00000488376 THAP7Q9BT49 309 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-226ENST00000488376 GPR132Q9UNW8 380 aa10.55□□□□□ -0.72
SYNE1-226ENST00000488376 F8W735 103 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-226ENST00000488376 K7EIM0 57 aa10.54□□□□□ -0.72
SYNE1-226ENST00000488376 MECP2P51608 486 aaKnown RBP10.54□□□□□ -0.72
SYNE1-226ENST00000488376 KLF9Q13886 244 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-226ENST00000488376 PYDC2Q56P42 97 aa10.54□□□□□ -0.72
SYNE1-226ENST00000488376 UNQ9165/PRO28630Q6UXU0 137 aa10.54□□□□□ -0.72
SYNE1-226ENST00000488376 Q6ZRM9 215 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms