RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 HELTA6NFD8 242 aa11.01□□□□□ -0.65
USP40-214ENST00000483519 ZNF891A8MT65 544 aaPredicted RBP11.01□□□□□ -0.65
USP40-214ENST00000483519 HSBP1L1C9JCN9 74 aa11.01□□□□□ -0.65
USP40-214ENST00000483519 AMY1AP04745 511 aa11.01□□□□□ -0.65
USP40-214ENST00000483519 VDAC2P45880 294 aaPredicted RBP11.01□□□□□ -0.65
USP40-214ENST00000483519 ERVK-16P61578 105 aa11.01□□□□□ -0.65
USP40-214ENST00000483519 MRPL49Q13405 166 aaKnown RBP11.01□□□□□ -0.65
USP40-214ENST00000483519 ZNF766Q5HY98 468 aa11.01□□□□□ -0.65
USP40-214ENST00000483519 MDP1Q86V88 176 aa11.01□□□□□ -0.65
USP40-214ENST00000483519 RCHY1Q96PM5 261 aa11.01□□□□□ -0.65
USP40-214ENST00000483519 FAM173AQ9BQD7 235 aa11.01□□□□□ -0.65
USP40-214ENST00000483519 TUBG2Q9NRH3 451 aa11.01□□□□□ -0.65
USP40-214ENST00000483519 OSTCQ9NRP0 149 aa11.01□□□□□ -0.65
USP40-214ENST00000483519 FCGR3BO75015 233 aa11□□□□□ -0.65
USP40-214ENST00000483519 C3orf79P0CE67 100 aa11□□□□□ -0.65
USP40-214ENST00000483519 TEPPQ6URK8 271 aa11□□□□□ -0.65
USP40-214ENST00000483519 STPG3Q8N7X2 389 aa11□□□□□ -0.65
USP40-214ENST00000483519 COQ2Q96H96 371 aa11□□□□□ -0.65
USP40-214ENST00000483519 PPIAL4AQ9Y536 164 aa11□□□□□ -0.65
USP40-214ENST00000483519 PCNX2A6NKB5 2137 aa11□□□□□ -0.65
USP40-214ENST00000483519 WDR87Q6ZQQ6 2873 aa11□□□□□ -0.65
USP40-214ENST00000483519 IGHV3-64DA0A0J9YX35 117 aa11□□□□□ -0.65
USP40-214ENST00000483519 SRIP30626 198 aa11□□□□□ -0.65
USP40-214ENST00000483519 LINC00205P59089 165 aa11□□□□□ -0.65
USP40-214ENST00000483519 PMCHL1Q16048 86 aa11□□□□□ -0.65
USP40-214ENST00000483519 TIGITQ495A1 244 aa11□□□□□ -0.65
USP40-214ENST00000483519 SPINK14Q6IE38 97 aa11□□□□□ -0.65
USP40-214ENST00000483519 OR4P4Q8NGL7 312 aa11□□□□□ -0.65
USP40-214ENST00000483519 C22orf15Q8WYQ4 148 aa11□□□□□ -0.65
USP40-214ENST00000483519 IL19Q9UHD0 177 aa11□□□□□ -0.65
USP40-214ENST00000483519 MRPS16Q9Y3D3 137 aaKnown RBP11□□□□□ -0.65
USP40-214ENST00000483519 IGHV3-43A0A0B4J1X8 118 aa11□□□□□ -0.65
USP40-214ENST00000483519 CCL25O15444 150 aa11□□□□□ -0.65
USP40-214ENST00000483519 SPINK4O60575 86 aa11□□□□□ -0.65
USP40-214ENST00000483519 CELA3AP09093 270 aa11□□□□□ -0.65
USP40-214ENST00000483519 IGHV3-43DP0DP04 118 aa11□□□□□ -0.65
USP40-214ENST00000483519 DUTP33316 252 aaKnown RBP11□□□□□ -0.65
USP40-214ENST00000483519 SSTR5P35346 364 aa11□□□□□ -0.65
USP40-214ENST00000483519 GPR12P47775 334 aa11□□□□□ -0.65
USP40-214ENST00000483519 FOXF2Q12947 444 aa11□□□□□ -0.65
USP40-214ENST00000483519 KIAA1644Q3SXP7 199 aa11□□□□□ -0.65
USP40-214ENST00000483519 SPATA31B1PQ5VZV4 182 aa11□□□□□ -0.65
USP40-214ENST00000483519 TMEM167BQ9NRX6 74 aa11□□□□□ -0.65
USP40-214ENST00000483519 SLC35D1Q9NTN3 355 aa11□□□□□ -0.65
USP40-214ENST00000483519 BET1LQ9NYM9 111 aa11□□□□□ -0.65
USP40-214ENST00000483519 SPINT2O43291 252 aa10.99□□□□□ -0.65
USP40-214ENST00000483519 ADH4P08319 380 aa10.99□□□□□ -0.65
USP40-214ENST00000483519 STUMQ69YW2 141 aa10.99□□□□□ -0.65
USP40-214ENST00000483519 NIT1Q86X76 327 aa10.99□□□□□ -0.65
USP40-214ENST00000483519 ZNF738Q8NE65 137 aa10.99□□□□□ -0.65
USP40-214ENST00000483519 OR5B3Q8NH48 314 aa10.99□□□□□ -0.65
USP40-214ENST00000483519 TRGV8A0A0C4DH27 118 aa10.99□□□□□ -0.65
USP40-214ENST00000483519 NKX6-3A6NJ46 265 aa10.99□□□□□ -0.65
USP40-214ENST00000483519 BMPR1BO00238 502 aa10.99□□□□□ -0.65
USP40-214ENST00000483519 TOMM40O96008 361 aa10.99□□□□□ -0.65
USP40-214ENST00000483519 CGAP01215 116 aa10.99□□□□□ -0.65
USP40-214ENST00000483519 TSPOP30536 169 aa10.99□□□□□ -0.65
USP40-214ENST00000483519 UBE2V1Q13404 147 aa10.99□□□□□ -0.65
USP40-214ENST00000483519 TRAT1Q6PIZ9 186 aa10.99□□□□□ -0.65
USP40-214ENST00000483519 PQLC2Q6ZP29 291 aa10.99□□□□□ -0.65
USP40-214ENST00000483519 DOLPP1Q86YN1 238 aa10.99□□□□□ -0.65
USP40-214ENST00000483519 BCL2L2Q92843 193 aaPredicted RBP10.99□□□□□ -0.65
USP40-214ENST00000483519 SLC25A10Q9UBX3 287 aaPredicted RBP10.99□□□□□ -0.65
USP40-214ENST00000483519 TRAV34A0A0B4J273 112 aa10.98□□□□□ -0.65
USP40-214ENST00000483519 DEFB108AA8MXU0 73 aa10.98□□□□□ -0.65
USP40-214ENST00000483519 ISLRO14498 428 aa10.98□□□□□ -0.65
USP40-214ENST00000483519 FOXH1O75593 365 aa10.98□□□□□ -0.65
USP40-214ENST00000483519 TNFSF15O95150 251 aa10.98□□□□□ -0.65
USP40-214ENST00000483519 CA2P00918 260 aa10.98□□□□□ -0.65
USP40-214ENST00000483519 SAPCD1Q5SSQ6 148 aa10.98□□□□□ -0.65
USP40-214ENST00000483519 TIPARPQ7Z3E1 657 aaKnown RBP10.98□□□□□ -0.65
USP40-214ENST00000483519 ABHD12Q8N2K0 398 aa10.98□□□□□ -0.65
USP40-214ENST00000483519 OR2D3Q8NGH3 330 aa10.98□□□□□ -0.65
USP40-214ENST00000483519 TSKUQ8WUA8 353 aa10.98□□□□□ -0.65
USP40-214ENST00000483519 CORO2AQ92828 525 aa10.98□□□□□ -0.65
USP40-214ENST00000483519 WNT10AQ9GZT5 417 aa10.98□□□□□ -0.65
USP40-214ENST00000483519 RNASE7Q9H1E1 156 aaKnown RBP10.98□□□□□ -0.65
USP40-214ENST00000483519 MRPL27Q9P0M9 148 aaKnown RBP10.98□□□□□ -0.65
USP40-214ENST00000483519 COX11Q9Y6N1 276 aa10.98□□□□□ -0.65
USP40-214ENST00000483519 IQCF6A8MYZ5 107 aa10.98□□□□□ -0.65
USP40-214ENST00000483519 RBX1P62877 108 aa10.98□□□□□ -0.65
USP40-214ENST00000483519 MORN2Q502X0 79 aa10.98□□□□□ -0.65
USP40-214ENST00000483519 COL27A1Q8IZC6 1860 aaPredicted RBP10.98□□□□□ -0.65
USP40-214ENST00000483519 OR13A1Q8NGR1 328 aa10.98□□□□□ -0.65
USP40-214ENST00000483519 CDC42EP3Q9UKI2 254 aa10.98□□□□□ -0.65
USP40-214ENST00000483519 LOXL2Q9Y4K0 774 aa10.98□□□□□ -0.65
USP40-214ENST00000483519 ZNF292O60281 2723 aa10.97□□□□□ -0.65
USP40-214ENST00000483519 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.97□□□□□ -0.65
USP40-214ENST00000483519 ITGB1BP1O14713 200 aa10.97□□□□□ -0.65
USP40-214ENST00000483519 WNT9BO14905 357 aa10.97□□□□□ -0.65
USP40-214ENST00000483519 APCSP02743 223 aa10.97□□□□□ -0.65
USP40-214ENST00000483519 NTF3P20783 257 aa10.97□□□□□ -0.65
USP40-214ENST00000483519 CRYBB3P26998 211 aa10.97□□□□□ -0.65
USP40-214ENST00000483519 TCL1AP56279 114 aa10.97□□□□□ -0.65
USP40-214ENST00000483519 SLC35B1P78383 322 aa10.97□□□□□ -0.65
USP40-214ENST00000483519 RELBQ01201 579 aa10.97□□□□□ -0.65
USP40-214ENST00000483519 FXYD3Q14802 87 aa10.97□□□□□ -0.65
USP40-214ENST00000483519 PSG5Q15238 335 aa10.97□□□□□ -0.65
USP40-214ENST00000483519 ZNF439Q8NDP4 499 aa10.97□□□□□ -0.65
USP40-214ENST00000483519 RFESDQ8TAC1 157 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms