RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 NDUFB6O95139 128 aa13.75□□□□□ -0.21
COL7A1-205ENST00000465238 CDS2O95674 445 aa13.75□□□□□ -0.21
COL7A1-205ENST00000465238 CDX1P47902 265 aaPredicted RBP13.75□□□□□ -0.21
COL7A1-205ENST00000465238 CD69Q07108 199 aa13.75□□□□□ -0.21
COL7A1-205ENST00000465238 TMEM128Q5BJH2 165 aa13.75□□□□□ -0.21
COL7A1-205ENST00000465238 CENPSQ8N2Z9 138 aa13.75□□□□□ -0.21
COL7A1-205ENST00000465238 CASTOR1Q8WTX7 329 aa13.75□□□□□ -0.21
COL7A1-205ENST00000465238 RRNAD1Q96FB5 475 aaKnown RBP13.75□□□□□ -0.21
COL7A1-205ENST00000465238 GALNT14Q96FL9 552 aa13.75□□□□□ -0.21
COL7A1-205ENST00000465238 UBE2E2Q96LR5 201 aa13.75□□□□□ -0.21
COL7A1-205ENST00000465238 B9D2Q9BPU9 175 aa13.75□□□□□ -0.21
COL7A1-205ENST00000465238 SLA2Q9H6Q3 261 aa13.75□□□□□ -0.21
COL7A1-205ENST00000465238 OR51B2Q9Y5P1 312 aa13.75□□□□□ -0.21
COL7A1-205ENST00000465238 TEX50A0A1B0GTY4 177 aa13.74□□□□□ -0.21
COL7A1-205ENST00000465238 TEX22C9J3V5 150 aa13.74□□□□□ -0.21
COL7A1-205ENST00000465238 E7EUB6 86 aa13.74□□□□□ -0.21
COL7A1-205ENST00000465238 H3BUA1 57 aa13.74□□□□□ -0.21
COL7A1-205ENST00000465238 CCL24O00175 119 aa13.74□□□□□ -0.21
COL7A1-205ENST00000465238 RBMXL2O75526 392 aaKnown RBP13.74□□□□□ -0.21
COL7A1-205ENST00000465238 IGKV1-5P01602 117 aa13.74□□□□□ -0.21
COL7A1-205ENST00000465238 TRGV3P03979 118 aa13.74□□□□□ -0.21
COL7A1-205ENST00000465238 TPPP2P59282 170 aa13.74□□□□□ -0.21
COL7A1-205ENST00000465238 OR2B8PP59922 312 aa13.74□□□□□ -0.21
COL7A1-205ENST00000465238 C11orf87Q6NUJ2 197 aa13.74□□□□□ -0.21
COL7A1-205ENST00000465238 SELENOHQ8IZQ5 122 aaKnown RBP13.74□□□□□ -0.21
COL7A1-205ENST00000465238 TTC9CQ8N5M4 171 aa13.74□□□□□ -0.21
COL7A1-205ENST00000465238 ZNF491Q8N8L2 437 aa13.74□□□□□ -0.21
COL7A1-205ENST00000465238 OR1L8Q8NGR8 309 aa13.74□□□□□ -0.21
COL7A1-205ENST00000465238 RBPMSQ93062 196 aaKnown RBP13.74□□□□□ -0.21
COL7A1-205ENST00000465238 RAX2Q96IS3 184 aa13.74□□□□□ -0.21
COL7A1-205ENST00000465238 QTRT1Q9BXR0 403 aaKnown RBP13.74□□□□□ -0.21
COL7A1-205ENST00000465238 TRAPPC2P0DI81 140 aa13.73□□□□□ -0.21
COL7A1-205ENST00000465238 TRAPPC2BP0DI82 140 aa13.73□□□□□ -0.21
COL7A1-205ENST00000465238 VAMP1P23763 118 aa13.73□□□□□ -0.21
COL7A1-205ENST00000465238 BTCP35070 178 aa13.73□□□□□ -0.21
COL7A1-205ENST00000465238 SUPT4H1P63272 117 aaKnown RBP13.73□□□□□ -0.21
COL7A1-205ENST00000465238 TMEM187Q14656 261 aa13.73□□□□□ -0.21
COL7A1-205ENST00000465238 TMEM268Q5VZI3 342 aa13.73□□□□□ -0.21
COL7A1-205ENST00000465238 THOC7Q6I9Y2 204 aaKnown RBP13.73□□□□□ -0.21
COL7A1-205ENST00000465238 MYOZ3Q8TDC0 251 aa13.73□□□□□ -0.21
COL7A1-205ENST00000465238 TMEM56Q96MV1 263 aa13.73□□□□□ -0.21
COL7A1-205ENST00000465238 HINT2Q9BX68 163 aa13.73□□□□□ -0.21
COL7A1-205ENST00000465238 TMEM56-RWDD3S4R434 201 aa13.73□□□□□ -0.21
COL7A1-205ENST00000465238 KMT2CQ8NEZ4 4911 aaKnown RBP13.72□□□□□ -0.21
COL7A1-205ENST00000465238 A0A1B0GW64 132 aa13.72□□□□□ -0.21
COL7A1-205ENST00000465238 C15orf61A6NNL5 157 aa13.72□□□□□ -0.21
COL7A1-205ENST00000465238 UPK1BO75841 260 aa13.72□□□□□ -0.21
COL7A1-205ENST00000465238 BRI3O95415 125 aa13.72□□□□□ -0.21
COL7A1-205ENST00000465238 SRPXP78539 464 aa13.72□□□□□ -0.21
COL7A1-205ENST00000465238 KIAA0141Q14154 515 aaPredicted RBP13.72□□□□□ -0.21
COL7A1-205ENST00000465238 MZT2BQ6NZ67 158 aa13.72□□□□□ -0.21
COL7A1-205ENST00000465238 FAM219AQ8IW50 185 aa13.72□□□□□ -0.21
COL7A1-205ENST00000465238 LGI3Q8N145 548 aa13.72□□□□□ -0.21
COL7A1-205ENST00000465238 OR5B3Q8NH48 314 aa13.72□□□□□ -0.21
COL7A1-205ENST00000465238 LHFPL5Q8TAF8 219 aa13.72□□□□□ -0.21
COL7A1-205ENST00000465238 IL22RA2Q969J5 263 aa13.72□□□□□ -0.21
COL7A1-205ENST00000465238 DUX3Q96PT4 197 aa13.72□□□□□ -0.21
COL7A1-205ENST00000465238 SRSF8Q9BRL6 282 aaKnown RBP13.72□□□□□ -0.21
COL7A1-205ENST00000465238 TMEM14BQ9NUH8 114 aa13.72□□□□□ -0.21
COL7A1-205ENST00000465238 ZNF257Q9Y2Q1 563 aa13.72□□□□□ -0.21
COL7A1-205ENST00000465238 PIGBOS1A0A0B4J2F0 54 aa13.71□□□□□ -0.21
COL7A1-205ENST00000465238 A0A0G2JLM5 398 aa13.71□□□□□ -0.21
COL7A1-205ENST00000465238 CGB1A6NKQ9 187 aa13.71□□□□□ -0.21
COL7A1-205ENST00000465238 NPIPB5A8MRT5 1133 aa13.71□□□□□ -0.21
COL7A1-205ENST00000465238 DHFRP00374 187 aa13.71□□□□□ -0.21
COL7A1-205ENST00000465238 AREGP15514 252 aa13.71□□□□□ -0.21
COL7A1-205ENST00000465238 PSMB6P28072 239 aa13.71□□□□□ -0.21
COL7A1-205ENST00000465238 RAB25P57735 213 aa13.71□□□□□ -0.21
COL7A1-205ENST00000465238 UBE2MP61081 183 aaKnown RBP13.71□□□□□ -0.21
COL7A1-205ENST00000465238 IZUMO4Q1ZYL8 232 aa13.71□□□□□ -0.21
COL7A1-205ENST00000465238 HSD17B13Q7Z5P4 300 aaPredicted RBP13.71□□□□□ -0.21
COL7A1-205ENST00000465238 C4orf3Q8WVX3 66 aa13.71□□□□□ -0.21
COL7A1-205ENST00000465238 OR5B12Q96R08 314 aa13.71□□□□□ -0.21
COL7A1-205ENST00000465238 NDUFA4L2Q9NRX3 87 aa13.71□□□□□ -0.21
COL7A1-205ENST00000465238 PRR13Q9NZ81 148 aa13.71□□□□□ -0.21
COL7A1-205ENST00000465238 FLVCR2Q9UPI3 526 aa13.71□□□□□ -0.21
COL7A1-205ENST00000465238 C13orf42A0A1B0GVH6 325 aa13.7□□□□□ -0.22
COL7A1-205ENST00000465238 SFT2D2O95562 160 aa13.7□□□□□ -0.22
COL7A1-205ENST00000465238 P0C879 139 aa13.7□□□□□ -0.22
COL7A1-205ENST00000465238 MECP2P51608 486 aaKnown RBP13.7□□□□□ -0.22
COL7A1-205ENST00000465238 OR10W1Q8NGF6 305 aa13.7□□□□□ -0.22
COL7A1-205ENST00000465238 LSM10Q969L4 123 aaKnown RBP13.7□□□□□ -0.22
COL7A1-205ENST00000465238 PDCD10Q9BUL8 212 aa13.7□□□□□ -0.22
COL7A1-205ENST00000465238 GNB4Q9HAV0 340 aa13.7□□□□□ -0.22
COL7A1-205ENST00000465238 A0A0B4J293 547 aa13.69□□□□□ -0.22
COL7A1-205ENST00000465238 IGLC7A0M8Q6 106 aa13.69□□□□□ -0.22
COL7A1-205ENST00000465238 DBX1A6NMT0 343 aa13.69□□□□□ -0.22
COL7A1-205ENST00000465238 IGHV3-11P01762 117 aa13.69□□□□□ -0.22
COL7A1-205ENST00000465238 PRH1P02810 166 aa13.69□□□□□ -0.22
COL7A1-205ENST00000465238 REG1AP05451 166 aa13.69□□□□□ -0.22
COL7A1-205ENST00000465238 CRYGCP07315 174 aa13.69□□□□□ -0.22
COL7A1-205ENST00000465238 OR13C7P0DN81 318 aa13.69□□□□□ -0.22
COL7A1-205ENST00000465238 DEFA4P12838 97 aa13.69□□□□□ -0.22
COL7A1-205ENST00000465238 HSPE1P61604 102 aaKnown RBP13.69□□□□□ -0.22
COL7A1-205ENST00000465238 ASAH1Q13510 395 aa13.69□□□□□ -0.22
COL7A1-205ENST00000465238 PPP1R1AQ13522 171 aa13.69□□□□□ -0.22
COL7A1-205ENST00000465238 DEFB136Q30KP8 78 aa13.69□□□□□ -0.22
COL7A1-205ENST00000465238 C9orf66Q5T8R8 295 aa13.69□□□□□ -0.22
COL7A1-205ENST00000465238 ZNF429Q86V71 674 aa13.69□□□□□ -0.22
COL7A1-205ENST00000465238 SLC35G3Q8N808 338 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms